Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46610 * 2 1 4 4 N 1.46491 * 109.47349 * 120.00192 * 2 1 3 5 5 C 1.34781 * 120.00057 * 274.99844 * 4 2 1 6 6 O 1.21282 * 120.00021 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99784 * 179.97438 * 5 4 2 8 8 H 1.08995 * 115.55092 * 34.28462 * 7 5 4 9 9 C 1.53002 * 117.50082 * 248.60769 * 7 5 4 10 10 C 1.52986 * 60.00009 * 252.51714 * 9 7 5 11 11 C 1.52993 * 138.59021 * 130.89749 * 10 9 7 12 12 C 1.53000 * 138.58724 * 229.11048 * 10 9 7 13 13 C 1.52999 * 109.47295 * 240.00411 * 2 1 3 14 14 C 1.53493 * 114.20816 * 174.86662 * 13 2 1 15 15 N 1.47075 * 87.98494 * 220.34763 * 14 13 2 16 16 C 1.34779 * 136.05610 * 207.09163 * 15 14 13 17 17 O 1.21279 * 119.99605 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.99771 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46941 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00192 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99912 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00218 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99899 * 179.71998 * 22 20 19 24 24 Si 1.86799 * 119.99737 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46753 * 269.72369 * 24 22 20 26 26 H 1.48494 * 109.47389 * 29.72207 * 24 22 20 27 27 H 1.48503 * 109.46986 * 149.72533 * 24 22 20 28 28 C 1.47066 * 87.88327 * 27.34281 * 15 14 13 29 29 H 1.08997 * 109.46641 * 184.94438 * 1 2 3 30 30 H 1.09000 * 109.46844 * 304.94110 * 1 2 3 31 31 H 1.09001 * 109.47334 * 64.94402 * 1 2 3 32 32 H 0.96996 * 120.00190 * 95.00479 * 4 2 1 33 33 H 1.09000 * 117.49709 * 0.02562 * 9 7 5 34 34 H 1.09000 * 117.50105 * 145.00094 * 9 7 5 35 35 H 1.09001 * 117.49757 * 238.37750 * 11 10 9 36 36 H 1.08998 * 117.49939 * 23.39764 * 11 10 9 37 37 H 1.09008 * 117.49386 * 336.59187 * 12 10 9 38 38 H 1.08995 * 117.50037 * 121.58943 * 12 10 9 39 39 H 1.09002 * 113.41376 * 308.07066 * 13 2 1 40 40 H 1.08997 * 113.46936 * 105.56491 * 14 13 2 41 41 H 1.09000 * 113.51892 * 335.12773 * 14 13 2 42 42 H 1.08993 * 109.47519 * 59.99855 * 18 16 15 43 43 H 1.08998 * 109.46876 * 299.98995 * 18 16 15 44 44 H 0.96994 * 119.99937 * 180.27377 * 23 22 20 45 45 H 1.08995 * 113.46751 * 87.44313 * 28 15 14 46 46 H 1.09005 * 113.46479 * 217.87862 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6490 -0.7289 3.5876 8 1 3.3925 -1.5062 3.4113 9 6 1.6567 -0.9469 4.7316 10 6 2.7732 0.0892 4.8745 11 6 2.9346 1.5518 5.2932 12 6 3.8528 0.4808 5.8855 13 6 2.0401 -0.7211 -1.2493 14 6 3.5645 -0.6769 -1.4233 15 7 3.3421 -0.4652 -2.8616 16 6 4.0234 -0.7185 -3.9965 17 8 5.1100 -1.2548 -3.9446 18 6 3.4352 -0.3354 -5.3299 19 16 4.5808 -0.8022 -6.6513 20 6 3.6674 -0.2556 -8.0554 21 1 2.7007 0.2076 -7.9239 22 6 4.1903 -0.4204 -9.3306 23 7 3.5055 -0.0171 -10.3799 24 14 5.8620 -1.2223 -9.5581 25 1 6.9186 -0.1789 -9.5354 26 1 6.0999 -2.1916 -8.4586 27 1 5.8966 -1.9335 -10.8613 28 6 2.0519 0.1504 -2.5160 29 1 -0.3632 -1.0238 0.0886 30 1 -0.3633 0.5886 0.8424 31 1 -0.3634 0.4352 -0.9309 32 1 2.2491 -1.6317 1.1525 33 1 0.6408 -0.5767 4.5941 34 1 1.7473 -1.8677 5.3079 35 1 3.3668 2.2389 4.5657 36 1 2.1706 1.9761 5.9446 37 1 3.6927 0.2003 6.9266 38 1 4.8889 0.4628 5.5477 39 1 1.6029 -1.7101 -1.3873 40 1 4.0551 -1.6230 -1.1945 41 1 4.0344 0.1722 -0.9272 42 1 3.2685 0.7414 -5.3577 43 1 2.4868 -0.8537 -5.4710 44 1 3.8691 -0.1358 -11.2712 45 1 2.1223 1.2179 -2.3077 46 1 1.2539 -0.0909 -3.2182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335148941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = 24.462100 kcal Electronic energy + Delta-G solvation = -25769.792634 eV Core-core repulsion = 21982.122387 eV Total energy + Delta-G solvation = -3787.670247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92343 -40.08592 -38.23759 -37.58796 -35.36550 -33.16511 -32.45787 -31.50440 -30.26759 -27.90161 -26.23760 -25.63279 -25.03014 -23.29655 -22.79001 -21.05506 -20.87322 -19.49756 -19.18519 -17.77550 -17.51808 -16.87994 -16.69840 -15.70319 -15.52805 -15.43685 -15.30495 -15.14350 -14.94014 -14.50415 -14.33857 -14.03623 -13.80980 -13.06467 -12.96604 -12.85427 -12.80653 -12.71009 -12.59015 -12.18139 -12.04163 -11.96005 -11.86966 -11.31380 -11.27904 -11.02349 -10.89714 -10.67087 -10.63471 -10.58221 -10.44453 -10.05804 -9.87460 -9.62346 -9.41584 -9.02259 -8.73708 -8.52666 -6.94757 -6.30603 -4.02851 2.11791 2.53326 2.58092 2.88883 3.09695 3.25990 3.31869 3.34996 3.49124 3.55193 3.81136 3.96487 4.25682 4.30930 4.31412 4.38237 4.45397 4.62954 4.70104 4.72237 4.96326 4.98805 5.03025 5.08406 5.09062 5.13727 5.20320 5.22181 5.22682 5.24637 5.26646 5.35607 5.42702 5.45273 5.54099 5.59294 5.71190 5.77739 5.78144 5.86904 5.92538 5.98818 6.10283 7.12294 7.71354 7.88389 7.92408 8.37192 8.39843 9.15407 10.78563 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029500 B = 0.001783 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.927180 B =15701.066708 C =16202.213245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.093 0.907 4 N -0.722 5.722 5 C 0.543 3.457 6 O -0.532 6.532 7 C -0.144 4.144 8 H 0.125 0.875 9 C -0.100 4.100 10 C -0.202 4.202 11 C -0.113 4.113 12 C -0.130 4.130 13 C -0.138 4.138 14 C 0.113 3.887 15 N -0.652 5.652 16 C 0.561 3.439 17 O -0.516 6.516 18 C -0.116 4.116 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.235 1.235 27 H -0.274 1.274 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.402 0.598 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.088 0.912 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 -1.825 32.655 33.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.111 0.889 4 N -0.374 5.374 5 C 0.329 3.671 6 O -0.408 6.408 7 C -0.165 4.165 8 H 0.142 0.858 9 C -0.137 4.137 10 C -0.203 4.203 11 C -0.149 4.149 12 C -0.167 4.167 13 C -0.158 4.158 14 C -0.010 4.010 15 N -0.391 5.391 16 C 0.351 3.649 17 O -0.390 6.390 18 C -0.266 4.266 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.159 1.159 27 H -0.199 1.199 28 C -0.012 4.012 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.273 -1.787 32.309 32.785 hybrid contribution -0.519 -0.116 -0.632 0.826 sum -5.792 -1.904 31.677 32.258 Atomic orbital electron populations 1.22159 0.94548 1.02470 1.02916 1.20878 0.94490 0.97158 0.82386 0.88860 1.45981 1.67809 1.14173 1.09412 1.19677 0.77122 0.86765 0.83501 1.90711 1.49524 1.15767 1.84758 1.21982 1.04094 1.02390 0.88009 0.85759 1.22654 0.94370 0.99024 0.97649 1.21154 1.02828 0.98488 0.97799 1.22607 1.01220 0.89473 1.01637 1.22782 0.95094 1.01910 0.96887 1.23404 0.96859 1.01122 0.94385 1.22865 0.95049 1.02259 0.80846 1.49571 1.22081 1.62010 1.05402 1.19907 0.83909 0.77627 0.83459 1.90714 1.20096 1.42033 1.86174 1.23213 1.04153 1.05023 0.94220 1.84797 1.27839 1.80542 0.98376 1.22302 1.07683 1.46164 0.90774 0.89360 1.24708 0.97742 0.94122 0.94684 1.69935 1.38058 1.45128 0.98469 0.86738 0.84043 0.81433 0.79656 1.19190 1.15928 1.19882 1.22990 0.86422 0.97796 0.93985 0.92198 0.91945 0.91096 0.76390 0.88077 0.87548 0.88132 0.88509 0.88290 0.88443 0.86930 0.90422 0.90034 0.88565 0.88494 0.91914 0.89396 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.48 37.16 0.35 -0.67 16 2 C 0.16 1.05 2.34 -67.93 -0.16 0.89 16 3 H 0.09 0.79 7.43 -51.93 -0.39 0.41 16 4 N -0.72 -4.48 4.96 -53.81 -0.27 -4.75 16 5 C 0.54 4.62 7.58 -10.98 -0.08 4.53 16 6 O -0.53 -6.51 15.91 5.56 0.09 -6.42 16 7 C -0.14 -0.93 6.19 -91.77 -0.57 -1.50 16 8 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 9 C -0.10 -0.56 10.23 -26.74 -0.27 -0.83 16 10 C -0.20 -1.46 5.05 -154.52 -0.78 -2.24 16 11 C -0.11 -0.83 10.16 -26.73 -0.27 -1.10 16 12 C -0.13 -0.75 10.53 -26.73 -0.28 -1.04 16 13 C -0.14 -0.97 3.52 -89.97 -0.32 -1.29 16 14 C 0.11 1.12 8.07 -8.50 -0.07 1.06 16 15 N -0.65 -8.77 3.69 -185.04 -0.68 -9.45 16 16 C 0.56 10.45 8.10 -10.99 -0.09 10.36 16 17 O -0.52 -11.61 16.64 5.56 0.09 -11.52 16 18 C -0.12 -2.30 5.98 36.00 0.22 -2.08 16 19 S -0.14 -3.64 18.54 -107.50 -1.99 -5.63 16 20 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 24 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.24 -5.99 6.73 56.52 0.38 -5.61 16 27 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.11 1.01 7.99 -8.37 -0.07 0.94 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 1.59 8.60 -40.82 -0.35 1.24 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.09 0.70 8.00 -51.93 -0.42 0.29 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 403.75 15.07 6.08 6.08 Total: -1.00 -36.80 403.75 -10.29 -47.09 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.49 Total: -1.76 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.18 Total: -5.01 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.17 Total: -39.94 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.18 Total: -17.94 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.80 -10.29 -47.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335148941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.549 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds