Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46610 * 2 1 4 4 N 1.46491 * 109.47349 * 120.00192 * 2 1 3 5 5 C 1.34781 * 120.00057 * 274.99844 * 4 2 1 6 6 O 1.21282 * 120.00021 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99784 * 179.97438 * 5 4 2 8 8 H 1.08995 * 115.55092 * 34.28462 * 7 5 4 9 9 C 1.53002 * 117.50082 * 248.60769 * 7 5 4 10 10 C 1.52986 * 60.00009 * 252.51714 * 9 7 5 11 11 C 1.52993 * 138.59021 * 130.89749 * 10 9 7 12 12 C 1.53000 * 138.58724 * 229.11048 * 10 9 7 13 13 C 1.52999 * 109.47295 * 240.00411 * 2 1 3 14 14 C 1.53493 * 114.20816 * 174.86662 * 13 2 1 15 15 N 1.47075 * 87.98494 * 220.34763 * 14 13 2 16 16 C 1.34779 * 136.05610 * 207.09163 * 15 14 13 17 17 O 1.21279 * 119.99605 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.99771 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46941 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00192 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99912 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00218 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99899 * 179.71998 * 22 20 19 24 24 Si 1.86799 * 119.99737 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46753 * 269.72369 * 24 22 20 26 26 H 1.48494 * 109.47389 * 29.72207 * 24 22 20 27 27 H 1.48503 * 109.46986 * 149.72533 * 24 22 20 28 28 C 1.47066 * 87.88327 * 27.34281 * 15 14 13 29 29 H 1.08997 * 109.46641 * 184.94438 * 1 2 3 30 30 H 1.09000 * 109.46844 * 304.94110 * 1 2 3 31 31 H 1.09001 * 109.47334 * 64.94402 * 1 2 3 32 32 H 0.96996 * 120.00190 * 95.00479 * 4 2 1 33 33 H 1.09000 * 117.49709 * 0.02562 * 9 7 5 34 34 H 1.09000 * 117.50105 * 145.00094 * 9 7 5 35 35 H 1.09001 * 117.49757 * 238.37750 * 11 10 9 36 36 H 1.08998 * 117.49939 * 23.39764 * 11 10 9 37 37 H 1.09008 * 117.49386 * 336.59187 * 12 10 9 38 38 H 1.08995 * 117.50037 * 121.58943 * 12 10 9 39 39 H 1.09002 * 113.41376 * 308.07066 * 13 2 1 40 40 H 1.08997 * 113.46936 * 105.56491 * 14 13 2 41 41 H 1.09000 * 113.51892 * 335.12773 * 14 13 2 42 42 H 1.08993 * 109.47519 * 59.99855 * 18 16 15 43 43 H 1.08998 * 109.46876 * 299.98995 * 18 16 15 44 44 H 0.96994 * 119.99937 * 180.27377 * 23 22 20 45 45 H 1.08995 * 113.46751 * 87.44313 * 28 15 14 46 46 H 1.09005 * 113.46479 * 217.87862 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -0.0183 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6490 -0.7289 3.5876 8 1 3.3925 -1.5062 3.4113 9 6 1.6567 -0.9469 4.7316 10 6 2.7732 0.0892 4.8745 11 6 2.9346 1.5518 5.2932 12 6 3.8528 0.4808 5.8855 13 6 2.0401 -0.7211 -1.2493 14 6 3.5645 -0.6769 -1.4233 15 7 3.3421 -0.4652 -2.8616 16 6 4.0234 -0.7185 -3.9965 17 8 5.1100 -1.2548 -3.9446 18 6 3.4352 -0.3354 -5.3299 19 16 4.5808 -0.8022 -6.6513 20 6 3.6674 -0.2556 -8.0554 21 1 2.7007 0.2076 -7.9239 22 6 4.1903 -0.4204 -9.3306 23 7 3.5055 -0.0171 -10.3799 24 14 5.8620 -1.2223 -9.5581 25 1 6.9186 -0.1789 -9.5354 26 1 6.0999 -2.1916 -8.4586 27 1 5.8966 -1.9335 -10.8613 28 6 2.0519 0.1504 -2.5160 29 1 -0.3632 -1.0238 0.0886 30 1 -0.3633 0.5886 0.8424 31 1 -0.3634 0.4352 -0.9309 32 1 2.2491 -1.6317 1.1525 33 1 0.6408 -0.5767 4.5941 34 1 1.7473 -1.8677 5.3079 35 1 3.3668 2.2389 4.5657 36 1 2.1706 1.9761 5.9446 37 1 3.6927 0.2003 6.9266 38 1 4.8889 0.4628 5.5477 39 1 1.6029 -1.7101 -1.3873 40 1 4.0551 -1.6230 -1.1945 41 1 4.0344 0.1722 -0.9272 42 1 3.2685 0.7414 -5.3577 43 1 2.4868 -0.8537 -5.4710 44 1 3.8691 -0.1358 -11.2712 45 1 2.1223 1.2179 -2.3077 46 1 1.2539 -0.0909 -3.2182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335148941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = -0.019280 kcal Electronic energy + Delta-G solvation = -25770.854226 eV Core-core repulsion = 21982.122387 eV Total energy + Delta-G solvation = -3788.731840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77377 -40.86569 -39.28877 -38.37120 -36.12313 -34.69404 -33.68865 -32.42547 -31.39750 -29.00579 -27.86032 -27.03321 -25.66010 -24.04880 -23.28003 -21.75846 -21.46330 -20.51016 -20.00686 -19.58079 -18.24026 -17.96057 -17.57822 -17.18890 -16.82005 -16.58636 -16.06786 -15.90293 -15.83248 -15.70051 -15.34837 -15.12368 -14.92678 -14.73360 -14.08147 -13.78628 -13.62568 -13.56107 -13.36689 -13.34982 -13.10376 -13.01171 -12.78585 -12.64584 -12.57841 -12.36399 -11.94631 -11.87592 -11.65996 -11.19158 -11.17467 -11.07618 -11.05906 -10.91985 -10.67592 -10.57800 -10.08795 -9.84192 -9.03824 -8.53400 -6.25305 0.91505 1.30026 1.40160 1.46075 1.50206 1.51574 1.90965 2.03278 2.23346 2.64118 2.76534 2.84241 2.84721 3.21647 3.35965 3.46422 3.67021 3.81248 3.88617 3.96128 4.09901 4.12801 4.16614 4.37756 4.39710 4.43718 4.49662 4.51148 4.55434 4.60098 4.64227 4.75688 4.77848 4.81910 4.82790 4.85365 5.00381 5.01950 5.07047 5.18801 5.26895 5.36715 5.53209 5.68794 6.09182 6.52473 6.59625 6.91444 6.99401 7.29922 8.58908 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029500 B = 0.001783 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.927180 B =15701.066708 C =16202.213245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.162 3.838 3 H 0.077 0.923 4 N -0.710 5.710 5 C 0.539 3.461 6 O -0.576 6.576 7 C -0.146 4.146 8 H 0.148 0.852 9 C -0.085 4.085 10 C -0.229 4.229 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.106 4.106 14 C 0.108 3.892 15 N -0.652 5.652 16 C 0.561 3.439 17 O -0.566 6.566 18 C -0.101 4.101 19 S -0.175 6.175 20 C -0.530 4.530 21 H 0.063 0.937 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.237 1.237 27 H -0.257 1.257 28 C 0.104 3.896 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.416 0.584 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.278 0.722 45 H 0.102 0.898 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 -3.334 34.539 35.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.095 0.905 4 N -0.362 5.362 5 C 0.326 3.674 6 O -0.455 6.455 7 C -0.166 4.166 8 H 0.165 0.835 9 C -0.122 4.122 10 C -0.229 4.229 11 C -0.169 4.169 12 C -0.149 4.149 13 C -0.126 4.126 14 C -0.015 4.015 15 N -0.388 5.388 16 C 0.350 3.650 17 O -0.444 6.444 18 C -0.252 4.252 19 S 0.052 5.948 20 C -0.678 4.678 21 H 0.081 0.919 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.161 1.161 27 H -0.181 1.181 28 C -0.018 4.018 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.253 0.747 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.131 0.869 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.654 -3.307 34.225 34.846 hybrid contribution -0.562 0.447 -1.069 1.288 sum -6.216 -2.861 33.156 33.854 Atomic orbital electron populations 1.22113 0.93747 1.03067 1.02684 1.20752 0.94934 0.96313 0.82326 0.90536 1.45880 1.66888 1.14755 1.08652 1.20081 0.76475 0.86324 0.84478 1.90698 1.51580 1.17746 1.85498 1.22076 1.05026 1.02534 0.87004 0.83463 1.22739 0.93436 0.99242 0.96825 1.21431 1.04343 0.98314 0.98862 1.22565 1.02421 0.89845 1.02061 1.22830 0.94764 0.99886 0.97438 1.23213 0.94402 1.01544 0.93414 1.23141 0.97329 1.02643 0.78351 1.49550 1.23117 1.60586 1.05501 1.19517 0.83499 0.77735 0.84221 1.90687 1.22117 1.44684 1.86953 1.23160 1.03065 1.05827 0.93135 1.84717 1.29873 1.80868 0.99389 1.22433 1.07060 1.45809 0.92456 0.91919 1.25549 1.01156 0.94647 0.94492 1.70009 1.39809 1.46294 0.99144 0.85879 0.79793 0.80676 0.80089 1.18753 1.16111 1.18110 1.23366 0.84575 0.98884 0.94984 0.90857 0.93715 0.90147 0.74711 0.88857 0.85054 0.90154 0.88243 0.86618 0.88128 0.85004 0.90164 0.89639 0.87431 0.86916 0.91301 0.88014 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 71.98 0.68 -0.94 16 2 C 0.16 1.81 2.34 44.99 0.11 1.92 16 3 H 0.08 1.19 7.43 -2.39 -0.02 1.17 16 4 N -0.71 -7.22 4.96 -442.54 -2.19 -9.41 16 5 C 0.54 8.53 7.58 87.66 0.66 9.19 16 6 O -0.58 -14.16 15.91 -3.04 -0.05 -14.21 16 7 C -0.15 -1.62 6.19 -11.54 -0.07 -1.69 16 8 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 9 C -0.09 -0.78 10.23 30.59 0.31 -0.46 16 10 C -0.23 -3.03 5.05 -52.19 -0.26 -3.29 16 11 C -0.13 -1.98 10.16 30.59 0.31 -1.67 16 12 C -0.11 -1.16 10.53 30.59 0.32 -0.84 16 13 C -0.11 -1.15 3.52 -10.37 -0.04 -1.19 16 14 C 0.11 1.89 8.07 83.18 0.67 2.56 16 15 N -0.65 -16.17 3.69 -857.72 -3.16 -19.33 16 16 C 0.56 20.30 8.10 87.65 0.71 21.01 16 17 O -0.57 -25.33 16.64 -3.03 -0.05 -25.38 16 18 C -0.10 -3.93 5.98 71.23 0.43 -3.51 16 19 S -0.18 -8.98 18.54 -56.49 -1.05 -10.03 16 20 C -0.53 -31.02 10.04 67.96 0.68 -30.34 16 21 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 22 C 0.05 2.78 5.50 84.86 0.47 3.24 16 23 N -0.91 -55.63 13.97 21.65 0.30 -55.33 16 24 Si 0.91 45.08 27.74 68.60 1.90 46.99 16 25 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.24 -11.70 6.73 99.48 0.67 -11.03 16 27 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.10 1.58 7.99 83.27 0.67 2.24 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.42 1.97 8.60 -92.71 -0.80 1.17 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.49 8.10 -2.39 -0.02 1.47 16 42 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.10 1.34 8.00 -2.39 -0.02 1.32 16 46 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -81.96 403.75 1.49 -80.46 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.14 Total: 9.99 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.65 Total: -3.76 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -5.05 Total: -84.07 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.10 Total: -39.59 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.03 kcal Total: -81.96 1.49 -80.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335148941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.443 kcal (2) G-P(sol) polarization free energy of solvation -81.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds