Wall clock time and date at job start Tue Mar 31 2020 20:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 5 5 C 1.34777 * 119.99873 * 275.00296 * 4 2 1 6 6 O 1.21284 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00137 * 179.97438 * 5 4 2 8 8 H 1.09007 * 115.54818 * 325.71836 * 7 5 4 9 9 C 1.53001 * 117.49858 * 111.38703 * 7 5 4 10 10 C 1.52991 * 117.49990 * 180.02562 * 7 5 4 11 11 C 1.53001 * 138.58326 * 121.61805 * 10 7 5 12 12 C 1.52996 * 138.58882 * 23.40828 * 10 7 5 13 13 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 14 14 C 1.53948 * 113.74061 * 158.74256 * 13 2 1 15 15 N 1.47815 * 86.03137 * 222.08686 * 14 13 2 16 16 C 1.34777 * 134.44999 * 204.64545 * 15 14 13 17 17 O 1.21288 * 119.99921 * 179.87012 * 16 15 14 18 18 C 1.50700 * 120.00387 * 359.86465 * 16 15 14 19 19 S 1.81005 * 109.47198 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99718 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00280 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99816 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99912 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00246 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46889 * 89.99826 * 24 22 20 26 26 H 1.48496 * 109.47478 * 209.99985 * 24 22 20 27 27 H 1.48506 * 109.47005 * 330.00116 * 24 22 20 28 28 C 1.47576 * 91.05506 * 24.54995 * 15 14 13 29 29 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 30 30 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 32 32 H 0.96995 * 120.00050 * 94.72411 * 4 2 1 33 33 H 1.09001 * 117.50051 * 214.97773 * 9 7 5 34 34 H 1.08996 * 117.50490 * 0.02562 * 9 7 5 35 35 H 1.08995 * 117.50171 * 336.59400 * 11 10 7 36 36 H 1.08998 * 117.49460 * 121.62389 * 11 10 7 37 37 H 1.08997 * 117.50026 * 238.37678 * 12 10 7 38 38 H 1.09002 * 117.49783 * 23.37844 * 12 10 7 39 39 H 1.09000 * 112.94094 * 290.33299 * 13 2 1 40 40 H 1.09003 * 113.76413 * 336.34724 * 14 13 2 41 41 H 1.08989 * 113.76897 * 107.74751 * 14 13 2 42 42 H 1.09003 * 109.47106 * 300.00371 * 18 16 15 43 43 H 1.08998 * 109.47088 * 60.00202 * 18 16 15 44 44 H 0.97002 * 120.00257 * 179.97438 * 23 22 20 45 45 H 1.09000 * 113.76745 * 221.15526 * 28 15 14 46 46 H 1.09004 * 113.76963 * 89.75473 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1470 -0.0184 2.3572 6 8 1.8589 1.1585 2.4115 7 6 2.6488 -0.7289 3.5877 8 1 2.3517 -1.7735 3.6815 9 6 4.0305 -0.3374 4.1155 10 6 2.7722 0.0889 4.8748 11 6 2.2320 0.0643 6.3061 12 6 2.1774 1.3573 5.4897 13 6 2.0400 -0.7213 -1.2493 14 6 3.4848 -0.3521 -1.6317 15 7 2.9978 -0.3176 -3.0268 16 6 3.5782 -0.4731 -4.2333 17 8 2.9103 -0.3922 -5.2425 18 6 5.0570 -0.7474 -4.3283 19 16 5.5308 -0.9045 -6.0682 20 6 7.2562 -1.2136 -5.8886 21 1 7.6979 -1.2544 -4.9039 22 6 8.0479 -1.4035 -7.0127 23 7 7.5098 -1.3523 -8.2129 24 14 9.8772 -1.7305 -6.8225 25 1 10.1102 -3.1933 -6.7167 26 1 10.6008 -1.1981 -8.0049 27 1 10.3748 -1.0599 -5.5944 28 6 1.6214 -0.0471 -2.5684 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2453 -1.6328 1.1535 33 1 4.6423 -1.1243 4.5568 34 1 4.5765 0.4344 3.5730 35 1 1.2929 -0.4607 6.4807 36 1 2.9582 0.0117 7.1172 37 1 2.8676 2.1552 5.7639 38 1 1.2024 1.6830 5.1271 39 1 1.8528 -1.7948 -1.2263 40 1 3.8047 0.6191 -1.2539 41 1 4.2070 -1.1447 -1.4367 42 1 5.6091 0.0757 -3.8746 43 1 5.2892 -1.6738 -3.8031 44 1 8.0631 -1.4847 -8.9986 45 1 0.8587 -0.5969 -3.1200 46 1 1.3927 1.0138 -2.4665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335148942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:15 Heat of formation + Delta-G solvation = -4.357847 kcal Electronic energy + Delta-G solvation = -25803.796748 eV Core-core repulsion = 22014.876774 eV Total energy + Delta-G solvation = -3788.919974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63894 -40.82702 -39.19764 -38.33003 -36.07998 -34.60444 -33.68104 -32.44292 -31.17818 -29.01182 -27.71787 -27.03655 -25.74666 -23.94697 -23.26775 -21.63680 -21.48418 -20.44231 -19.95102 -19.53926 -18.20597 -17.90815 -17.61964 -16.91989 -16.83262 -16.57564 -16.17100 -15.88227 -15.81696 -15.62647 -15.34525 -14.86968 -14.70734 -14.59528 -14.07413 -13.77781 -13.61787 -13.46508 -13.37913 -13.20021 -13.05990 -12.89814 -12.72238 -12.62176 -12.59135 -12.35412 -11.88639 -11.85012 -11.75165 -11.16214 -11.15755 -11.06265 -10.96127 -10.90302 -10.66549 -10.31437 -10.06302 -9.78633 -8.70484 -8.36225 -6.15483 1.19550 1.41746 1.41980 1.51520 1.52843 1.55816 1.94135 2.05365 2.25721 2.77674 2.87093 2.97817 3.17723 3.25642 3.36414 3.59694 3.67889 3.83840 3.89068 4.04576 4.11352 4.15451 4.22504 4.38143 4.42643 4.44012 4.48243 4.52092 4.55939 4.65387 4.66351 4.76575 4.78220 4.80817 4.85514 4.87045 4.99939 5.02944 5.07846 5.17875 5.27922 5.32824 5.39718 5.54732 6.17994 6.53840 6.61545 7.04619 7.07995 7.31491 8.73085 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.002005 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.891408 B =13962.367044 C =15561.154603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.076 0.924 4 N -0.708 5.708 5 C 0.539 3.461 6 O -0.577 6.577 7 C -0.141 4.141 8 H 0.151 0.849 9 C -0.092 4.092 10 C -0.229 4.229 11 C -0.110 4.110 12 C -0.133 4.133 13 C -0.102 4.102 14 C 0.104 3.896 15 N -0.650 5.650 16 C 0.552 3.448 17 O -0.570 6.570 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.258 1.258 28 C 0.112 3.888 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.417 0.583 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.272 0.728 45 H 0.085 0.915 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 -1.640 31.948 33.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.094 0.906 4 N -0.360 5.360 5 C 0.326 3.674 6 O -0.456 6.456 7 C -0.162 4.162 8 H 0.169 0.831 9 C -0.129 4.129 10 C -0.229 4.229 11 C -0.147 4.147 12 C -0.170 4.170 13 C -0.122 4.122 14 C -0.017 4.017 15 N -0.387 5.387 16 C 0.341 3.659 17 O -0.449 6.449 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.011 4.011 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.255 0.745 33 H 0.149 0.851 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.148 0.852 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.468 -0.717 30.105 32.592 hybrid contribution 1.652 -0.317 0.401 1.729 sum -10.816 -1.034 30.506 32.383 Atomic orbital electron populations 1.22127 0.94167 1.03207 1.02315 1.20779 0.94689 0.96452 0.82608 0.90584 1.45871 1.66844 1.14780 1.08511 1.20100 0.76478 0.86327 0.84494 1.90701 1.51454 1.17893 1.85571 1.22067 1.03119 1.00582 0.90387 0.83104 1.22749 0.88286 1.02585 0.99249 1.21435 1.03434 1.04070 0.93980 1.22834 1.02456 0.98935 0.90428 1.22572 1.01460 0.91142 1.01858 1.23288 0.94470 1.02364 0.92065 1.23616 0.98011 1.03211 0.76888 1.50079 1.12711 1.70913 1.04948 1.19777 0.88554 0.75563 0.81980 1.90688 1.65515 1.52443 1.36228 1.23266 0.94936 1.05876 1.02896 1.85595 1.09713 1.93832 1.03327 1.23182 0.93182 1.56749 0.96294 0.89921 1.26159 1.05123 0.94047 0.93873 1.70186 1.38440 1.47396 0.98700 0.84930 0.75613 0.78914 0.78372 1.19088 1.20301 1.18201 1.23335 0.84443 1.01595 0.91685 0.90694 0.90753 0.93639 0.74548 0.85139 0.89177 0.87736 0.86806 0.88552 0.89914 0.85195 0.88830 0.88068 0.88021 0.87412 0.91941 0.89693 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.31 71.98 0.67 -1.19 16 2 C 0.16 1.91 2.38 44.99 0.11 2.02 16 3 H 0.08 1.25 7.42 -2.39 -0.02 1.24 16 4 N -0.71 -7.08 5.08 -442.52 -2.25 -9.33 16 5 C 0.54 8.49 7.58 87.66 0.66 9.15 16 6 O -0.58 -14.31 15.91 -3.04 -0.05 -14.36 16 7 C -0.14 -1.53 6.19 -11.54 -0.07 -1.61 16 8 H 0.15 0.77 8.14 -2.38 -0.02 0.75 16 9 C -0.09 -0.94 10.24 30.60 0.31 -0.63 16 10 C -0.23 -3.03 5.06 -52.18 -0.26 -3.29 16 11 C -0.11 -1.07 10.53 30.60 0.32 -0.75 16 12 C -0.13 -1.98 10.16 30.60 0.31 -1.67 16 13 C -0.10 -1.21 3.47 -10.13 -0.04 -1.24 16 14 C 0.10 1.70 8.19 86.44 0.71 2.41 16 15 N -0.65 -17.22 3.61 -836.00 -3.02 -20.24 16 16 C 0.55 21.54 8.08 87.66 0.71 22.25 16 17 O -0.57 -27.79 16.59 -3.05 -0.05 -27.84 16 18 C -0.12 -4.88 5.91 71.24 0.42 -4.46 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 20 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 24 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 C 0.11 2.10 7.54 86.49 0.65 2.75 16 29 H 0.07 0.81 7.52 -2.39 -0.02 0.79 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.42 1.67 8.61 -92.71 -0.80 0.87 16 33 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 43 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 45 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.62 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -85.39 405.19 1.59 -83.80 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.18 Total: 13.93 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.62 Total: -5.83 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -4.98 Total: -85.49 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.10 Total: -42.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -85.39 1.59 -83.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335148942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.444 kcal (2) G-P(sol) polarization free energy of solvation -85.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds