Wall clock time and date at job start Tue Mar 31 2020 21:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 N 1.46496 * 109.47382 * 239.99316 * 2 1 3 5 5 C 1.34773 * 120.00104 * 85.00191 * 4 2 1 6 6 O 1.21281 * 119.99810 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.46499 * 109.47278 * 179.97438 * 7 5 4 9 9 C 1.34600 * 126.43825 * 124.71614 * 8 7 5 10 10 N 1.31074 * 106.67756 * 179.87689 * 9 8 7 11 11 N 1.28834 * 107.98952 * 0.37913 * 10 9 8 12 12 N 1.28735 * 109.40123 * 359.75931 * 11 10 9 13 13 C 1.50701 * 109.47104 * 119.99212 * 2 1 3 14 14 O 1.21282 * 120.00370 * 93.41973 * 13 2 1 15 15 N 1.34777 * 119.99893 * 273.42571 * 13 2 1 16 16 C 1.47426 * 125.65052 * 355.00732 * 15 13 2 17 17 C 1.54916 * 104.83030 * 155.91205 * 16 15 13 18 18 C 1.55151 * 101.58047 * 37.01356 * 17 16 15 19 19 O 1.42892 * 110.71976 * 82.86370 * 18 17 16 20 20 C 1.50707 * 110.71581 * 205.95672 * 18 17 16 21 21 H 1.07998 * 119.99906 * 116.15862 * 20 18 17 22 22 C 1.37877 * 119.99781 * 296.15630 * 20 18 17 23 23 N 1.31511 * 120.00160 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99633 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.47218 * 90.00337 * 24 22 20 26 26 H 1.48503 * 109.47153 * 210.00100 * 24 22 20 27 27 H 1.48498 * 109.47366 * 330.00427 * 24 22 20 28 28 C 1.47028 * 125.64994 * 175.05837 * 15 13 2 29 29 H 1.08997 * 109.46916 * 54.73142 * 1 2 3 30 30 H 1.09005 * 109.46411 * 174.72791 * 1 2 3 31 31 H 1.08993 * 109.47562 * 294.72487 * 1 2 3 32 32 H 0.97001 * 119.99886 * 265.00071 * 4 2 1 33 33 H 1.09003 * 109.46825 * 299.99823 * 7 5 4 34 34 H 1.09005 * 109.47112 * 59.99308 * 7 5 4 35 35 H 1.08001 * 126.65761 * 0.02562 * 9 8 7 36 36 H 1.09003 * 110.36101 * 37.07656 * 16 15 13 37 37 H 1.08994 * 110.36907 * 274.75021 * 16 15 13 38 38 H 1.09006 * 111.00180 * 278.93397 * 17 16 15 39 39 H 1.08998 * 111.03455 * 155.10135 * 17 16 15 40 40 H 0.96701 * 114.00663 * 61.45182 * 19 18 17 41 41 H 0.96999 * 119.99927 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.88142 * 61.59767 * 28 15 13 43 43 H 1.09000 * 109.88067 * 300.43865 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8583 1.1581 -2.4117 7 6 2.6490 -0.7292 -3.5875 8 7 2.6979 0.2119 -4.7092 9 6 3.7712 0.4920 -5.4716 10 7 3.3834 1.3780 -6.3563 11 7 2.1391 1.6350 -6.1429 12 7 1.7217 0.9322 -5.1484 13 6 2.0324 -0.7102 1.2306 14 8 2.2936 -1.8937 1.1836 15 7 2.1912 -0.0303 2.3834 16 6 2.0125 1.4229 2.5555 17 6 1.6917 1.6075 4.0598 18 6 2.6057 0.5339 4.7072 19 8 3.9356 1.0317 4.8667 20 6 2.0444 0.0843 6.0316 21 1 1.7270 -0.9395 6.1639 22 6 1.9361 0.9799 7.0742 23 7 2.3221 2.2267 6.9129 24 14 1.2409 0.4223 8.7160 25 1 2.3447 -0.0687 9.5798 26 1 0.5632 1.5646 9.3802 27 1 0.2624 -0.6722 8.4932 28 6 2.5725 -0.6149 3.6774 29 1 -0.3633 0.5934 -0.8390 30 1 -0.3632 -1.0234 -0.0944 31 1 -0.3634 0.4298 0.9334 32 1 2.2491 -1.6319 -1.1523 33 1 3.6482 -1.1217 -3.3983 34 1 1.9762 -1.5511 -3.8323 35 1 4.7594 0.0671 -5.3749 36 1 1.1827 1.7780 1.9443 37 1 2.9296 1.9513 2.2956 38 1 0.6410 1.4006 4.2635 39 1 1.9635 2.6075 4.3979 40 1 3.9998 1.8044 5.4446 41 1 2.2455 2.8569 7.6463 42 1 3.5586 -1.0730 3.6011 43 1 1.8371 -1.3612 3.9781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362939420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:58 Heat of formation + Delta-G solvation = 13.524365 kcal Electronic energy + Delta-G solvation = -29296.891044 eV Core-core repulsion = 24994.746038 eV Total energy + Delta-G solvation = -4302.145007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.46083 -40.67705 -39.52447 -37.60667 -35.91365 -35.17390 -34.54990 -32.75894 -32.29509 -31.70466 -29.86334 -29.11466 -28.43734 -25.70881 -24.53000 -24.12831 -23.49192 -22.34359 -21.03955 -19.97798 -19.38884 -18.34144 -18.17160 -17.36021 -17.08731 -16.58298 -16.26200 -16.18384 -15.90742 -15.28559 -15.02930 -14.82449 -14.39761 -14.20023 -14.07938 -13.82596 -13.16368 -13.06560 -12.83825 -12.59084 -12.43192 -12.33468 -12.16973 -11.82346 -11.67789 -11.53852 -11.51893 -11.43187 -11.42531 -10.99732 -10.77075 -10.73853 -10.55852 -10.36257 -10.24491 -9.85577 -9.58657 -9.42954 -8.76481 -8.36131 -8.27573 -6.39161 -4.46799 0.90252 1.42492 1.95301 2.00489 2.39467 2.71351 3.13670 3.21503 3.23088 3.30451 3.69795 3.86784 4.01853 4.18270 4.20320 4.42736 4.47644 4.88132 4.90259 4.92079 5.08389 5.34881 5.35229 5.38699 5.52611 5.61782 5.68650 5.72419 5.85219 5.88042 5.94368 6.06808 6.28116 6.46543 6.70880 6.78207 6.93709 7.14885 7.20927 7.59103 7.63082 7.80673 7.88746 8.22240 8.32750 8.55352 9.20107 9.30001 10.68826 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.002145 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.178680 B =13047.493017 C =13227.535267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.131 3.869 3 H 0.110 0.890 4 N -0.704 5.704 5 C 0.504 3.496 6 O -0.509 6.509 7 C 0.097 3.903 8 N -0.301 5.301 9 C 0.161 3.839 10 N -0.307 5.307 11 N -0.078 5.078 12 N -0.062 5.062 13 C 0.520 3.480 14 O -0.553 6.553 15 N -0.598 5.598 16 C 0.088 3.912 17 C -0.136 4.136 18 C 0.248 3.752 19 O -0.586 6.586 20 C -0.536 4.536 21 H 0.065 0.935 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.122 3.878 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.413 0.587 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.236 0.764 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.385 0.615 41 H 0.269 0.731 42 H 0.064 0.936 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -5.996 -16.721 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.128 0.872 4 N -0.359 5.359 5 C 0.286 3.714 6 O -0.382 6.382 7 C -0.028 4.028 8 N -0.103 5.103 9 C -0.138 4.138 10 N -0.154 5.154 11 N -0.072 5.072 12 N -0.049 5.049 13 C 0.307 3.693 14 O -0.433 6.433 15 N -0.330 5.330 16 C -0.034 4.034 17 C -0.175 4.175 18 C 0.208 3.792 19 O -0.396 6.396 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C 0.001 3.999 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.250 0.750 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.236 0.764 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.120 -5.246 -17.767 18.526 hybrid contribution 0.296 -0.843 2.027 2.215 sum 0.416 -6.089 -15.740 16.882 Atomic orbital electron populations 1.22072 0.92122 1.03449 1.03889 1.20823 0.96225 0.97839 0.82825 0.87207 1.45622 1.66978 1.14965 1.08311 1.20101 0.79291 0.87753 0.84250 1.90871 1.48185 1.15115 1.84068 1.21971 1.07699 0.90543 0.82629 1.48156 1.08076 1.29905 1.24201 1.27771 0.96570 0.98480 0.90935 1.75002 1.05724 1.13229 1.21442 1.78686 1.03545 1.16659 1.08358 1.79026 1.14308 1.03486 1.08055 1.19952 0.78632 0.86982 0.83751 1.90658 1.52593 1.15525 1.84478 1.48610 1.65654 1.09745 1.08980 1.22651 1.00337 0.79918 1.00480 1.23343 1.01377 1.02841 0.89933 1.19451 0.80677 0.87700 0.91416 1.86113 1.29377 1.52003 1.72065 1.21486 1.42486 0.97272 0.96197 0.91711 1.24983 0.94177 0.94630 0.99176 1.69631 1.47451 1.03338 1.33088 0.86399 0.79216 0.78396 0.82884 1.20350 1.20998 1.19710 1.22150 0.99880 0.97214 0.80671 0.90718 0.91406 0.90411 0.74969 0.83578 0.84345 0.74787 0.91723 0.91493 0.91214 0.89246 0.76409 0.92056 0.91783 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.43 37.16 0.35 -1.37 16 2 C 0.13 1.58 2.30 -69.08 -0.16 1.42 16 3 H 0.11 1.42 6.61 -51.93 -0.34 1.07 16 4 N -0.70 -6.49 5.05 -54.94 -0.28 -6.77 16 5 C 0.50 4.62 7.81 -10.99 -0.09 4.53 16 6 O -0.51 -7.11 15.36 5.56 0.09 -7.02 16 7 C 0.10 0.43 6.97 -5.20 -0.04 0.39 16 8 N -0.30 -2.53 3.19 -63.74 -0.20 -2.73 16 9 C 0.16 1.16 12.79 -90.39 -1.16 0.00 16 10 N -0.31 -3.60 12.36 29.59 0.37 -3.24 16 11 N -0.08 -1.10 13.43 60.35 0.81 -0.29 16 12 N -0.06 -0.79 12.29 60.35 0.74 -0.05 16 13 C 0.52 8.13 7.04 -10.98 -0.08 8.05 16 14 O -0.55 -9.73 16.37 5.56 0.09 -9.64 16 15 N -0.60 -10.43 3.33 -170.51 -0.57 -11.00 16 16 C 0.09 1.45 6.35 -2.52 -0.02 1.44 16 17 C -0.14 -2.71 5.56 -24.58 -0.14 -2.84 16 18 C 0.25 5.56 0.85 -89.94 -0.08 5.49 16 19 O -0.59 -13.91 13.06 -35.23 -0.46 -14.37 16 20 C -0.54 -13.24 8.22 -34.44 -0.28 -13.52 16 21 H 0.06 1.60 7.56 -52.49 -0.40 1.21 16 22 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 23 N -0.90 -22.00 10.69 55.43 0.59 -21.41 16 24 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 28 C 0.12 2.51 6.23 -3.06 -0.02 2.49 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.86 7.72 -51.93 -0.40 0.46 16 32 H 0.41 3.10 7.80 -40.82 -0.32 2.78 16 33 H 0.15 -0.02 8.08 -51.93 -0.42 -0.44 16 34 H 0.14 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.24 0.29 8.06 -52.49 -0.42 -0.13 16 36 H 0.06 0.89 6.96 -51.93 -0.36 0.52 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 39 H 0.09 1.87 7.64 -51.93 -0.40 1.47 16 40 H 0.38 9.21 7.28 45.56 0.33 9.54 16 41 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 42 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16 43 H 0.07 1.55 7.66 -51.93 -0.40 1.15 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -33.89 367.15 -4.89 -38.78 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.79 Total: 10.01 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.79 Total: 7.78 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 1.46 Total: -45.48 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.28 Total: -31.04 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.89 -4.89 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.302 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds