Wall clock time and date at job start Tue Mar 31 2020 21:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 N 1.46496 * 109.47382 * 239.99316 * 2 1 3 5 5 C 1.34773 * 120.00104 * 85.00191 * 4 2 1 6 6 O 1.21281 * 119.99810 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.46499 * 109.47278 * 179.97438 * 7 5 4 9 9 C 1.34600 * 126.43825 * 124.71614 * 8 7 5 10 10 N 1.31074 * 106.67756 * 179.87689 * 9 8 7 11 11 N 1.28834 * 107.98952 * 0.37913 * 10 9 8 12 12 N 1.28735 * 109.40123 * 359.75931 * 11 10 9 13 13 C 1.50701 * 109.47104 * 119.99212 * 2 1 3 14 14 O 1.21282 * 120.00370 * 93.41973 * 13 2 1 15 15 N 1.34777 * 119.99893 * 273.42571 * 13 2 1 16 16 C 1.47426 * 125.65052 * 355.00732 * 15 13 2 17 17 C 1.54916 * 104.83030 * 155.91205 * 16 15 13 18 18 C 1.55151 * 101.58047 * 37.01356 * 17 16 15 19 19 O 1.42892 * 110.71976 * 82.86370 * 18 17 16 20 20 C 1.50707 * 110.71581 * 205.95672 * 18 17 16 21 21 H 1.07998 * 119.99906 * 116.15862 * 20 18 17 22 22 C 1.37877 * 119.99781 * 296.15630 * 20 18 17 23 23 N 1.31511 * 120.00160 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99633 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.47218 * 90.00337 * 24 22 20 26 26 H 1.48503 * 109.47153 * 210.00100 * 24 22 20 27 27 H 1.48498 * 109.47366 * 330.00427 * 24 22 20 28 28 C 1.47028 * 125.64994 * 175.05837 * 15 13 2 29 29 H 1.08997 * 109.46916 * 54.73142 * 1 2 3 30 30 H 1.09005 * 109.46411 * 174.72791 * 1 2 3 31 31 H 1.08993 * 109.47562 * 294.72487 * 1 2 3 32 32 H 0.97001 * 119.99886 * 265.00071 * 4 2 1 33 33 H 1.09003 * 109.46825 * 299.99823 * 7 5 4 34 34 H 1.09005 * 109.47112 * 59.99308 * 7 5 4 35 35 H 1.08001 * 126.65761 * 0.02562 * 9 8 7 36 36 H 1.09003 * 110.36101 * 37.07656 * 16 15 13 37 37 H 1.08994 * 110.36907 * 274.75021 * 16 15 13 38 38 H 1.09006 * 111.00180 * 278.93397 * 17 16 15 39 39 H 1.08998 * 111.03455 * 155.10135 * 17 16 15 40 40 H 0.96701 * 114.00663 * 61.45182 * 19 18 17 41 41 H 0.96999 * 119.99927 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.88142 * 61.59767 * 28 15 13 43 43 H 1.09000 * 109.88067 * 300.43865 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 8 1.8583 1.1581 -2.4117 7 6 2.6490 -0.7292 -3.5875 8 7 2.6979 0.2119 -4.7092 9 6 3.7712 0.4920 -5.4716 10 7 3.3834 1.3780 -6.3563 11 7 2.1391 1.6350 -6.1429 12 7 1.7217 0.9322 -5.1484 13 6 2.0324 -0.7102 1.2306 14 8 2.2936 -1.8937 1.1836 15 7 2.1912 -0.0303 2.3834 16 6 2.0125 1.4229 2.5555 17 6 1.6917 1.6075 4.0598 18 6 2.6057 0.5339 4.7072 19 8 3.9356 1.0317 4.8667 20 6 2.0444 0.0843 6.0316 21 1 1.7270 -0.9395 6.1639 22 6 1.9361 0.9799 7.0742 23 7 2.3221 2.2267 6.9129 24 14 1.2409 0.4223 8.7160 25 1 2.3447 -0.0687 9.5798 26 1 0.5632 1.5646 9.3802 27 1 0.2624 -0.6722 8.4932 28 6 2.5725 -0.6149 3.6774 29 1 -0.3633 0.5934 -0.8390 30 1 -0.3632 -1.0234 -0.0944 31 1 -0.3634 0.4298 0.9334 32 1 2.2491 -1.6319 -1.1523 33 1 3.6482 -1.1217 -3.3983 34 1 1.9762 -1.5511 -3.8323 35 1 4.7594 0.0671 -5.3749 36 1 1.1827 1.7780 1.9443 37 1 2.9296 1.9513 2.2956 38 1 0.6410 1.4006 4.2635 39 1 1.9635 2.6075 4.3979 40 1 3.9998 1.8044 5.4446 41 1 2.2455 2.8569 7.6463 42 1 3.5586 -1.0730 3.6011 43 1 1.8371 -1.3612 3.9781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362939420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:58 Heat of formation + Delta-G solvation = -14.513089 kcal Electronic energy + Delta-G solvation = -29298.106839 eV Core-core repulsion = 24994.746038 eV Total energy + Delta-G solvation = -4303.360802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.15608 -41.70610 -40.65013 -39.10609 -36.64258 -36.18700 -36.06696 -34.18625 -33.47964 -32.65363 -31.30299 -30.13139 -29.65773 -27.30043 -25.62310 -24.83645 -24.44905 -23.61012 -21.92616 -21.46623 -20.59971 -19.37649 -19.06839 -18.75993 -18.03486 -17.55240 -17.27091 -16.96947 -16.87522 -16.79490 -16.30543 -16.08006 -15.85955 -15.50372 -14.96735 -14.81956 -14.55827 -14.11472 -13.88581 -13.73204 -13.60511 -13.48143 -13.22680 -13.19638 -13.14298 -13.10934 -12.76669 -12.67759 -12.46418 -12.27187 -12.21332 -12.12895 -12.01096 -11.49806 -11.30513 -11.13334 -11.00495 -10.63544 -10.42072 -10.15290 -9.72766 -8.25726 -6.39358 0.26577 0.92654 1.26478 1.27204 1.38940 1.41522 1.45346 1.52803 1.64642 2.17132 2.39253 3.00141 3.18619 3.26259 3.49324 3.55569 3.82923 3.90564 3.96028 3.96945 4.02963 4.03734 4.23068 4.33534 4.40536 4.53113 4.56588 4.61520 4.69468 4.72223 4.85853 5.06559 5.09399 5.12477 5.17628 5.21725 5.42580 5.51213 5.75836 6.05936 6.25230 6.44470 6.64308 6.89204 6.95181 7.30859 7.40614 7.59258 8.80494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.002145 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.178680 B =13047.493017 C =13227.535267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 H 0.105 0.895 4 N -0.696 5.696 5 C 0.504 3.496 6 O -0.561 6.561 7 C 0.098 3.902 8 N -0.300 5.300 9 C 0.185 3.815 10 N -0.347 5.347 11 N -0.119 5.119 12 N -0.094 5.094 13 C 0.523 3.477 14 O -0.571 6.571 15 N -0.604 5.604 16 C 0.100 3.900 17 C -0.128 4.128 18 C 0.234 3.766 19 O -0.594 6.594 20 C -0.560 4.560 21 H 0.055 0.945 22 C 0.037 3.963 23 N -0.907 5.907 24 Si 0.957 3.043 25 H -0.279 1.279 26 H -0.280 1.280 27 H -0.272 1.272 28 C 0.131 3.869 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.424 0.576 33 H 0.203 0.797 34 H 0.174 0.826 35 H 0.295 0.705 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.381 0.619 41 H 0.271 0.729 42 H 0.049 0.951 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -7.381 -17.673 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.123 0.877 4 N -0.352 5.352 5 C 0.289 3.711 6 O -0.438 6.438 7 C -0.025 4.025 8 N -0.102 5.102 9 C -0.113 4.113 10 N -0.195 5.195 11 N -0.113 5.113 12 N -0.082 5.082 13 C 0.312 3.688 14 O -0.451 6.451 15 N -0.336 5.336 16 C -0.022 4.022 17 C -0.167 4.167 18 C 0.194 3.806 19 O -0.403 6.403 20 C -0.598 4.598 21 H 0.073 0.927 22 C -0.165 4.165 23 N -0.546 5.546 24 Si 0.783 3.217 25 H -0.205 1.205 26 H -0.205 1.205 27 H -0.197 1.197 28 C 0.008 3.992 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.263 0.737 33 H 0.220 0.780 34 H 0.191 0.809 35 H 0.310 0.690 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.231 0.769 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.620 -6.667 -18.738 19.898 hybrid contribution 0.215 -0.505 2.374 2.436 sum 0.835 -7.171 -16.364 17.886 Atomic orbital electron populations 1.22035 0.91095 1.03933 1.03893 1.20623 0.96807 0.97226 0.82182 0.87715 1.45548 1.66744 1.15338 1.07570 1.20872 0.77939 0.87194 0.85094 1.90867 1.50428 1.17590 1.84901 1.22490 1.11643 0.89401 0.78966 1.48412 1.07514 1.29574 1.24698 1.28799 0.97756 0.96108 0.88615 1.74892 1.05337 1.15479 1.23771 1.78647 1.04927 1.18177 1.09573 1.78928 1.16242 1.04611 1.08388 1.20549 0.77518 0.86776 0.83976 1.90646 1.53142 1.16509 1.84842 1.48604 1.66358 1.10016 1.08584 1.22578 1.01735 0.79464 0.98450 1.23119 1.00206 1.01142 0.92207 1.19616 0.80422 0.89153 0.91432 1.86099 1.30439 1.51873 1.71920 1.21733 1.43196 0.97055 0.97791 0.92671 1.25576 0.94466 0.94803 1.01623 1.69695 1.47521 1.03711 1.33702 0.85567 0.78455 0.78003 0.79638 1.20512 1.20512 1.19685 1.21826 0.98907 0.96420 0.82041 0.90463 0.90727 0.90617 0.73675 0.77956 0.80901 0.69029 0.88467 0.91176 0.91909 0.90531 0.76878 0.91920 0.93264 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.43 71.98 0.68 -2.34 16 2 C 0.14 3.11 2.30 44.25 0.10 3.21 16 3 H 0.10 2.51 6.61 -2.39 -0.02 2.49 16 4 N -0.70 -10.84 5.05 -446.11 -2.25 -13.10 16 5 C 0.50 7.80 7.81 87.66 0.68 8.48 16 6 O -0.56 -14.89 15.36 -3.03 -0.05 -14.94 16 7 C 0.10 0.42 6.97 85.63 0.60 1.02 16 8 N -0.30 -4.14 3.19 -355.56 -1.14 -5.28 16 9 C 0.18 2.04 12.79 180.27 2.31 4.35 16 10 N -0.35 -7.79 12.36 -60.29 -0.74 -8.53 16 11 N -0.12 -3.35 13.43 37.01 0.50 -2.85 16 12 N -0.09 -2.33 12.29 37.02 0.45 -1.88 16 13 C 0.52 15.53 7.04 87.66 0.62 16.14 16 14 O -0.57 -19.19 16.37 -3.03 -0.05 -19.24 16 15 N -0.60 -20.51 3.33 -811.78 -2.70 -23.21 16 16 C 0.10 3.16 6.35 86.86 0.55 3.71 16 17 C -0.13 -5.08 5.56 31.99 0.18 -4.90 16 18 C 0.23 10.62 0.85 -10.35 -0.01 10.61 16 19 O -0.59 -28.63 13.06 -148.98 -1.95 -30.57 16 20 C -0.56 -28.02 8.22 25.60 0.21 -27.81 16 21 H 0.06 2.79 7.56 -2.91 -0.02 2.76 16 22 C 0.04 1.81 5.29 84.66 0.45 2.25 16 23 N -0.91 -44.71 10.69 21.45 0.23 -44.48 16 24 Si 0.96 39.83 29.54 68.60 2.03 41.86 16 25 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 C 0.13 5.40 6.23 86.73 0.54 5.94 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.54 7.72 -2.39 -0.02 1.52 16 32 H 0.42 4.88 7.80 -92.71 -0.72 4.16 16 33 H 0.20 -1.41 8.08 -2.39 -0.02 -1.43 16 34 H 0.17 -0.35 8.14 -2.38 -0.02 -0.37 16 35 H 0.29 -0.97 8.06 -2.91 -0.02 -0.99 16 36 H 0.10 2.46 6.96 -2.39 -0.02 2.45 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.54 8.04 -2.38 -0.02 2.52 16 39 H 0.08 3.22 7.64 -2.39 -0.02 3.20 16 40 H 0.38 18.59 7.28 -74.06 -0.54 18.05 16 41 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 42 H 0.05 2.14 8.07 -2.39 -0.02 2.12 16 43 H 0.07 2.83 7.66 -2.39 -0.02 2.81 16 Total: -1.00 -78.28 367.15 1.05 -77.22 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.18 Total: 24.33 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 6.90 Total: 20.67 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -5.65 Total: -99.33 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -2.04 Total: -64.75 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -78.28 1.05 -77.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.710 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds