Wall clock time and date at job start Tue Mar 31 2020 21:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46761 * 2 1 4 4 N 1.46502 * 109.47401 * 240.00482 * 2 1 3 5 5 C 1.34776 * 120.00086 * 84.99072 * 4 2 1 6 6 O 1.21279 * 120.00168 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99796 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.47110 * 180.02562 * 7 5 4 9 9 C 1.34602 * 126.43839 * 124.99689 * 8 7 5 10 10 N 1.31066 * 106.67617 * 180.02562 * 9 8 7 11 11 N 1.28841 * 107.99715 * 0.02562 * 10 9 8 12 12 N 1.28743 * 109.39355 * 359.73414 * 11 10 9 13 13 C 1.50696 * 109.47652 * 120.00111 * 2 1 3 14 14 O 1.21278 * 119.99819 * 93.88901 * 13 2 1 15 15 N 1.34778 * 120.00153 * 273.89792 * 13 2 1 16 16 C 1.47016 * 125.65056 * 174.92487 * 15 13 2 17 17 C 1.54329 * 107.40457 * 178.89745 * 16 15 13 18 18 C 1.55404 * 102.82507 * 337.97413 * 17 16 15 19 19 O 1.42896 * 110.89062 * 277.26954 * 18 17 16 20 20 C 1.50696 * 111.06642 * 153.48506 * 18 17 16 21 21 H 1.08001 * 120.00221 * 247.65686 * 20 18 17 22 22 C 1.37875 * 120.00092 * 67.67071 * 20 18 17 23 23 N 1.31520 * 119.99812 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 120.00296 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47020 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47153 * 119.99249 * 24 22 20 27 27 H 1.48498 * 109.47479 * 239.99736 * 24 22 20 28 28 C 1.47427 * 125.64682 * 354.96276 * 15 13 2 29 29 H 1.09006 * 109.46866 * 174.27108 * 1 2 3 30 30 H 1.08999 * 109.47084 * 294.26596 * 1 2 3 31 31 H 1.08997 * 109.47166 * 54.27203 * 1 2 3 32 32 H 0.97002 * 120.00053 * 265.00141 * 4 2 1 33 33 H 1.08996 * 109.47321 * 300.00119 * 7 5 4 34 34 H 1.08992 * 109.47356 * 60.00670 * 7 5 4 35 35 H 1.07992 * 126.65911 * 359.97033 * 9 8 7 36 36 H 1.09007 * 109.88519 * 298.39297 * 16 15 13 37 37 H 1.09000 * 109.88478 * 59.39762 * 16 15 13 38 38 H 1.08999 * 110.71929 * 96.24262 * 17 16 15 39 39 H 1.08994 * 110.71858 * 219.51855 * 17 16 15 40 40 H 0.96705 * 113.99915 * 292.23063 * 19 18 17 41 41 H 0.96999 * 119.99625 * 180.02562 * 23 22 20 42 42 H 1.09006 * 110.36689 * 322.93601 * 28 15 13 43 43 H 1.09001 * 110.36498 * 85.14789 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8588 1.1587 -2.4115 7 6 2.6488 -0.7286 -3.5878 8 7 2.6986 0.2129 -4.7091 9 6 3.7710 0.4887 -5.4744 10 7 3.3854 1.3793 -6.3553 11 7 2.1412 1.6374 -6.1420 12 7 1.7217 0.9305 -5.1512 13 6 2.0324 -0.7104 1.2304 14 8 2.3018 -1.8919 1.1809 15 7 2.1823 -0.0328 2.3858 16 6 2.5599 -0.6190 3.6801 17 6 2.6361 0.5332 4.7040 18 6 2.8457 1.7820 3.8031 19 8 4.2230 1.9326 3.4534 20 6 2.3219 3.0266 4.4721 21 1 1.4587 3.5344 4.0680 22 6 2.9449 3.5172 5.6000 23 7 3.9960 2.8987 6.0923 24 14 2.2961 5.0604 6.4289 25 1 1.1133 5.5622 5.6843 26 1 1.9045 4.7445 7.8261 27 1 3.3549 6.1016 6.4349 28 6 1.9940 1.4188 2.5612 29 1 -0.3633 -1.0226 -0.1026 30 1 -0.3633 0.4223 0.9369 31 1 -0.3633 0.6001 -0.8342 32 1 2.2491 -1.6317 -1.1527 33 1 3.6479 -1.1210 -3.3987 34 1 1.9760 -1.5504 -3.8327 35 1 4.7578 0.0602 -5.3802 36 1 1.8078 -1.3435 3.9925 37 1 3.5315 -1.1061 3.5971 38 1 1.7043 0.6140 5.2636 39 1 3.4813 0.3947 5.3781 40 1 4.7955 2.1602 4.1988 41 1 4.4341 3.2437 6.8860 42 1 2.3536 1.9567 1.6840 43 1 0.9431 1.6461 2.7402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362939432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:01 Heat of formation + Delta-G solvation = 13.275246 kcal Electronic energy + Delta-G solvation = -29501.636303 eV Core-core repulsion = 25199.480494 eV Total energy + Delta-G solvation = -4302.155809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.39851 -40.61252 -39.47677 -37.56824 -35.85763 -35.12179 -34.44866 -32.70128 -32.26192 -31.74906 -29.96722 -28.98680 -28.43181 -25.37672 -24.81203 -24.07617 -23.64047 -22.07321 -20.89437 -19.99315 -19.44705 -18.28853 -18.10951 -17.34091 -17.04982 -16.55141 -16.24188 -16.07332 -15.78797 -15.29620 -15.10245 -14.97072 -14.31377 -14.08587 -13.88824 -13.59873 -13.27372 -12.98415 -12.85659 -12.64221 -12.36645 -12.25615 -12.20608 -12.11328 -11.71049 -11.45884 -11.43910 -11.36945 -11.29077 -10.95905 -10.71086 -10.67362 -10.56065 -10.29031 -10.19658 -9.91817 -9.53460 -9.42114 -8.80511 -8.35393 -8.24901 -6.41660 -4.50297 0.96312 1.48660 2.03425 2.06442 2.45129 2.76109 3.11412 3.21269 3.24076 3.33165 3.76094 3.92771 4.08676 4.15679 4.25194 4.49194 4.54840 4.84255 4.96105 5.00245 5.14419 5.38387 5.41119 5.48407 5.55140 5.67924 5.74950 5.78461 5.84097 5.97020 5.97696 6.12255 6.14522 6.36151 6.72203 6.77356 7.00872 7.15479 7.19012 7.61576 7.66865 7.79902 7.84994 8.24655 8.38617 8.52050 9.19082 9.32687 10.66096 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002568 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.367252 B =10900.240455 C =11810.363508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.114 0.886 4 N -0.704 5.704 5 C 0.503 3.497 6 O -0.506 6.506 7 C 0.098 3.902 8 N -0.301 5.301 9 C 0.161 3.839 10 N -0.307 5.307 11 N -0.078 5.078 12 N -0.062 5.062 13 C 0.523 3.477 14 O -0.559 6.559 15 N -0.596 5.596 16 C 0.109 3.891 17 C -0.140 4.140 18 C 0.251 3.749 19 O -0.586 6.586 20 C -0.538 4.538 21 H 0.067 0.933 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.412 0.588 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.236 0.764 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.388 0.612 41 H 0.270 0.730 42 H 0.072 0.928 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 -11.199 -12.626 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.131 0.869 4 N -0.359 5.359 5 C 0.285 3.715 6 O -0.380 6.380 7 C -0.028 4.028 8 N -0.103 5.103 9 C -0.137 4.137 10 N -0.154 5.154 11 N -0.073 5.073 12 N -0.049 5.049 13 C 0.310 3.690 14 O -0.439 6.439 15 N -0.327 5.327 16 C -0.013 4.013 17 C -0.179 4.179 18 C 0.210 3.790 19 O -0.396 6.396 20 C -0.576 4.576 21 H 0.085 0.915 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.017 4.017 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.252 0.748 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.241 0.759 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.401 -10.251 -13.807 17.363 hybrid contribution 0.773 -0.238 1.894 2.060 sum -1.628 -10.489 -11.913 15.956 Atomic orbital electron populations 1.22050 0.92170 1.03200 1.03942 1.20845 0.96136 0.98145 0.82711 0.86862 1.45604 1.67091 1.14871 1.08324 1.20094 0.79358 0.87772 0.84252 1.90883 1.48017 1.15032 1.84027 1.21963 1.07651 0.90506 0.82676 1.48150 1.08092 1.30025 1.24062 1.27762 0.96611 0.98535 0.90820 1.74995 1.05803 1.13058 1.21560 1.78687 1.03483 1.16545 1.08535 1.79022 1.14265 1.03559 1.08049 1.19948 0.78465 0.86838 0.83797 1.90637 1.52836 1.15780 1.84625 1.48559 1.65390 1.10317 1.08412 1.22083 0.99273 0.97162 0.82758 1.23289 1.02803 0.94664 0.97122 1.19592 0.80407 0.91843 0.87155 1.86067 1.19585 1.93039 1.40945 1.21484 1.14721 1.10377 1.11045 0.91463 1.25001 0.94507 0.97273 0.96213 1.69565 1.20480 1.39944 1.23554 0.86331 0.79095 0.82304 0.79089 1.19493 1.20760 1.20702 1.22666 1.00234 0.78048 1.00736 0.91587 0.90493 0.90667 0.75093 0.83616 0.84412 0.74795 0.92678 0.92159 0.91236 0.89719 0.75942 0.91988 0.91002 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.47 37.16 0.35 -1.42 16 2 C 0.13 1.69 2.54 -69.08 -0.18 1.51 16 3 H 0.11 1.67 6.08 -51.93 -0.32 1.36 16 4 N -0.70 -7.06 5.05 -54.93 -0.28 -7.34 16 5 C 0.50 5.09 7.81 -10.99 -0.09 5.00 16 6 O -0.51 -7.68 15.37 5.56 0.09 -7.59 16 7 C 0.10 0.50 6.97 -5.19 -0.04 0.47 16 8 N -0.30 -2.76 3.19 -63.74 -0.20 -2.96 16 9 C 0.16 1.28 12.79 -90.39 -1.16 0.13 16 10 N -0.31 -3.83 12.36 29.59 0.37 -3.47 16 11 N -0.08 -1.15 13.43 60.35 0.81 -0.34 16 12 N -0.06 -0.84 12.30 60.35 0.74 -0.10 16 13 C 0.52 8.35 7.04 -10.99 -0.08 8.27 16 14 O -0.56 -9.74 16.36 5.56 0.09 -9.65 16 15 N -0.60 -10.49 3.33 -170.51 -0.57 -11.06 16 16 C 0.11 1.98 6.86 -3.06 -0.02 1.96 16 17 C -0.14 -2.84 5.66 -24.76 -0.14 -2.98 16 18 C 0.25 5.55 0.89 -89.49 -0.08 5.47 16 19 O -0.59 -14.05 13.18 -35.23 -0.46 -14.52 16 20 C -0.54 -12.98 8.26 -34.44 -0.28 -13.26 16 21 H 0.07 1.60 7.77 -52.49 -0.41 1.19 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 23 N -0.90 -22.04 10.79 55.43 0.60 -21.44 16 24 Si 0.90 19.26 29.54 -169.99 -5.02 14.24 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 C 0.11 1.97 5.79 -2.53 -0.01 1.95 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.41 3.32 7.80 -40.82 -0.32 3.00 16 33 H 0.15 0.10 8.08 -51.93 -0.42 -0.32 16 34 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.24 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 39 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 40 H 0.39 9.56 6.93 45.56 0.32 9.87 16 41 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 42 H 0.07 1.34 6.90 -51.93 -0.36 0.98 16 43 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -33.80 368.26 -4.94 -38.74 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -4.84 Total: 11.15 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.81 Total: 8.79 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 1.47 Total: -46.71 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.29 Total: -31.76 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.80 -4.94 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.020 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds