Wall clock time and date at job start Tue Mar 31 2020 21:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46761 * 2 1 4 4 N 1.46502 * 109.47401 * 240.00482 * 2 1 3 5 5 C 1.34776 * 120.00086 * 84.99072 * 4 2 1 6 6 O 1.21279 * 120.00168 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99796 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.47110 * 180.02562 * 7 5 4 9 9 C 1.34602 * 126.43839 * 124.99689 * 8 7 5 10 10 N 1.31066 * 106.67617 * 180.02562 * 9 8 7 11 11 N 1.28841 * 107.99715 * 0.02562 * 10 9 8 12 12 N 1.28743 * 109.39355 * 359.73414 * 11 10 9 13 13 C 1.50696 * 109.47652 * 120.00111 * 2 1 3 14 14 O 1.21278 * 119.99819 * 93.88901 * 13 2 1 15 15 N 1.34778 * 120.00153 * 273.89792 * 13 2 1 16 16 C 1.47016 * 125.65056 * 174.92487 * 15 13 2 17 17 C 1.54329 * 107.40457 * 178.89745 * 16 15 13 18 18 C 1.55404 * 102.82507 * 337.97413 * 17 16 15 19 19 O 1.42896 * 110.89062 * 277.26954 * 18 17 16 20 20 C 1.50696 * 111.06642 * 153.48506 * 18 17 16 21 21 H 1.08001 * 120.00221 * 247.65686 * 20 18 17 22 22 C 1.37875 * 120.00092 * 67.67071 * 20 18 17 23 23 N 1.31520 * 119.99812 * 359.97438 * 22 20 18 24 24 Si 1.86800 * 120.00296 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47020 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47153 * 119.99249 * 24 22 20 27 27 H 1.48498 * 109.47479 * 239.99736 * 24 22 20 28 28 C 1.47427 * 125.64682 * 354.96276 * 15 13 2 29 29 H 1.09006 * 109.46866 * 174.27108 * 1 2 3 30 30 H 1.08999 * 109.47084 * 294.26596 * 1 2 3 31 31 H 1.08997 * 109.47166 * 54.27203 * 1 2 3 32 32 H 0.97002 * 120.00053 * 265.00141 * 4 2 1 33 33 H 1.08996 * 109.47321 * 300.00119 * 7 5 4 34 34 H 1.08992 * 109.47356 * 60.00670 * 7 5 4 35 35 H 1.07992 * 126.65911 * 359.97033 * 9 8 7 36 36 H 1.09007 * 109.88519 * 298.39297 * 16 15 13 37 37 H 1.09000 * 109.88478 * 59.39762 * 16 15 13 38 38 H 1.08999 * 110.71929 * 96.24262 * 17 16 15 39 39 H 1.08994 * 110.71858 * 219.51855 * 17 16 15 40 40 H 0.96705 * 113.99915 * 292.23063 * 19 18 17 41 41 H 0.96999 * 119.99625 * 180.02562 * 23 22 20 42 42 H 1.09006 * 110.36689 * 322.93601 * 28 15 13 43 43 H 1.09001 * 110.36498 * 85.14789 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8588 1.1587 -2.4115 7 6 2.6488 -0.7286 -3.5878 8 7 2.6986 0.2129 -4.7091 9 6 3.7710 0.4887 -5.4744 10 7 3.3854 1.3793 -6.3553 11 7 2.1412 1.6374 -6.1420 12 7 1.7217 0.9305 -5.1512 13 6 2.0324 -0.7104 1.2304 14 8 2.3018 -1.8919 1.1809 15 7 2.1823 -0.0328 2.3858 16 6 2.5599 -0.6190 3.6801 17 6 2.6361 0.5332 4.7040 18 6 2.8457 1.7820 3.8031 19 8 4.2230 1.9326 3.4534 20 6 2.3219 3.0266 4.4721 21 1 1.4587 3.5344 4.0680 22 6 2.9449 3.5172 5.6000 23 7 3.9960 2.8987 6.0923 24 14 2.2961 5.0604 6.4289 25 1 1.1133 5.5622 5.6843 26 1 1.9045 4.7445 7.8261 27 1 3.3549 6.1016 6.4349 28 6 1.9940 1.4188 2.5612 29 1 -0.3633 -1.0226 -0.1026 30 1 -0.3633 0.4223 0.9369 31 1 -0.3633 0.6001 -0.8342 32 1 2.2491 -1.6317 -1.1527 33 1 3.6479 -1.1210 -3.3987 34 1 1.9760 -1.5504 -3.8327 35 1 4.7578 0.0602 -5.3802 36 1 1.8078 -1.3435 3.9925 37 1 3.5315 -1.1061 3.5971 38 1 1.7043 0.6140 5.2636 39 1 3.4813 0.3947 5.3781 40 1 4.7955 2.1602 4.1988 41 1 4.4341 3.2437 6.8860 42 1 2.3536 1.9567 1.6840 43 1 0.9431 1.6461 2.7402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362939432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:01 Heat of formation + Delta-G solvation = -14.474466 kcal Electronic energy + Delta-G solvation = -29502.839621 eV Core-core repulsion = 25199.480494 eV Total energy + Delta-G solvation = -4303.359127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.16049 -41.69267 -40.63716 -39.07302 -36.65270 -36.14931 -36.03020 -34.13227 -33.49023 -32.78603 -31.33661 -30.09227 -29.64934 -27.03341 -25.95689 -24.86319 -24.53799 -23.32072 -21.86715 -21.59365 -20.60751 -19.41423 -18.98379 -18.75899 -18.10753 -17.54720 -17.17720 -16.97593 -16.88893 -16.79402 -16.46378 -16.18843 -15.68645 -15.29952 -14.91556 -14.82673 -14.54581 -14.27557 -13.94139 -13.72679 -13.62870 -13.49885 -13.36815 -13.23453 -13.13243 -13.02922 -12.70181 -12.59719 -12.46209 -12.24216 -12.21360 -12.13797 -11.91648 -11.50581 -11.40440 -11.11200 -10.99151 -10.64203 -10.41684 -10.14866 -9.68950 -8.25685 -6.39799 0.25889 0.92468 1.26226 1.26771 1.39722 1.41637 1.47380 1.55909 1.67572 2.17113 2.39539 3.00160 3.18577 3.26012 3.48697 3.55482 3.76614 3.92299 3.95763 4.02031 4.02604 4.08011 4.23163 4.30253 4.39883 4.51528 4.59444 4.63496 4.70744 4.71729 4.82200 5.06289 5.08582 5.13732 5.18993 5.24200 5.41941 5.49300 5.77450 6.02001 6.25692 6.42628 6.65922 6.90069 6.96748 7.31694 7.42406 7.58433 8.80731 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002568 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.367252 B =10900.240455 C =11810.363508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.095 0.905 4 N -0.695 5.695 5 C 0.501 3.499 6 O -0.563 6.563 7 C 0.100 3.900 8 N -0.300 5.300 9 C 0.185 3.815 10 N -0.347 5.347 11 N -0.119 5.119 12 N -0.095 5.095 13 C 0.526 3.474 14 O -0.569 6.569 15 N -0.602 5.602 16 C 0.116 3.884 17 C -0.130 4.130 18 C 0.232 3.768 19 O -0.596 6.596 20 C -0.555 4.555 21 H 0.065 0.935 22 C 0.033 3.967 23 N -0.912 5.912 24 Si 0.959 3.041 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.285 1.285 28 C 0.117 3.883 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.424 0.576 33 H 0.203 0.797 34 H 0.176 0.824 35 H 0.295 0.705 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.381 0.619 41 H 0.271 0.729 42 H 0.069 0.931 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -13.077 -13.216 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.112 0.888 4 N -0.351 5.351 5 C 0.287 3.713 6 O -0.440 6.440 7 C -0.024 4.024 8 N -0.102 5.102 9 C -0.113 4.113 10 N -0.195 5.195 11 N -0.113 5.113 12 N -0.082 5.082 13 C 0.314 3.686 14 O -0.450 6.450 15 N -0.333 5.333 16 C -0.006 4.006 17 C -0.169 4.169 18 C 0.191 3.809 19 O -0.406 6.406 20 C -0.593 4.593 21 H 0.083 0.917 22 C -0.168 4.168 23 N -0.552 5.552 24 Si 0.785 3.215 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.211 1.211 28 C -0.005 4.005 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.264 0.736 33 H 0.220 0.780 34 H 0.193 0.807 35 H 0.310 0.690 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.191 -12.183 -14.408 18.995 hybrid contribution 0.780 0.270 2.122 2.276 sum -1.410 -11.913 -12.287 17.172 Atomic orbital electron populations 1.22002 0.90823 1.03992 1.03825 1.20647 0.97065 0.97005 0.82615 0.88760 1.45521 1.66774 1.15282 1.07500 1.20936 0.77977 0.87201 0.85235 1.90877 1.50451 1.17712 1.84943 1.22489 1.11637 0.89369 0.78868 1.48412 1.07536 1.29716 1.24567 1.28798 0.97789 0.96190 0.88520 1.74884 1.05416 1.15293 1.23882 1.78646 1.04866 1.18054 1.09756 1.78924 1.16205 1.04673 1.08375 1.20377 0.77598 0.86693 0.83883 1.90629 1.53198 1.16319 1.84818 1.48559 1.66135 1.09757 1.08847 1.21948 0.99608 0.96461 0.82627 1.23074 1.01871 0.94834 0.97089 1.19862 0.79766 0.92064 0.89171 1.86061 1.20565 1.93113 1.40844 1.21763 1.14821 1.11345 1.11377 0.91655 1.25628 0.94820 0.99497 0.96807 1.69640 1.21045 1.40807 1.23745 0.85485 0.78371 0.79394 0.78218 1.19303 1.20477 1.21056 1.22475 1.00240 0.78756 0.99078 0.90235 0.90603 0.90871 0.73599 0.77998 0.80667 0.69014 0.90822 0.92857 0.91304 0.91562 0.76725 0.91957 0.91300 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.47 71.98 0.68 -2.47 16 2 C 0.14 3.34 2.54 44.24 0.11 3.46 16 3 H 0.09 2.76 6.08 -2.38 -0.01 2.74 16 4 N -0.70 -12.20 5.05 -446.10 -2.25 -14.45 16 5 C 0.50 8.98 7.81 87.66 0.68 9.67 16 6 O -0.56 -16.78 15.37 -3.03 -0.05 -16.83 16 7 C 0.10 0.59 6.97 85.63 0.60 1.19 16 8 N -0.30 -4.69 3.19 -355.58 -1.13 -5.83 16 9 C 0.18 2.36 12.79 180.27 2.31 4.67 16 10 N -0.35 -8.38 12.36 -60.30 -0.75 -9.12 16 11 N -0.12 -3.55 13.43 37.01 0.50 -3.06 16 12 N -0.09 -2.50 12.30 37.02 0.46 -2.05 16 13 C 0.53 15.91 7.04 87.66 0.62 16.53 16 14 O -0.57 -18.51 16.36 -3.02 -0.05 -18.56 16 15 N -0.60 -20.51 3.33 -811.78 -2.70 -23.21 16 16 C 0.12 4.09 6.86 86.73 0.60 4.68 16 17 C -0.13 -5.26 5.66 31.87 0.18 -5.08 16 18 C 0.23 10.29 0.89 -10.06 -0.01 10.28 16 19 O -0.60 -28.98 13.18 -148.98 -1.96 -30.94 16 20 C -0.55 -26.82 8.26 25.60 0.21 -26.61 16 21 H 0.07 3.10 7.77 -2.91 -0.02 3.08 16 22 C 0.03 1.62 5.30 84.65 0.45 2.06 16 23 N -0.91 -45.26 10.79 21.45 0.23 -45.03 16 24 Si 0.96 39.41 29.54 68.60 2.03 41.44 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 28 C 0.12 4.32 5.79 86.86 0.50 4.82 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.42 5.36 7.80 -92.71 -0.72 4.64 16 33 H 0.20 -1.07 8.08 -2.39 -0.02 -1.08 16 34 H 0.18 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.29 -0.47 8.06 -2.91 -0.02 -0.49 16 36 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.75 8.03 -2.39 -0.02 2.73 16 39 H 0.07 2.90 7.86 -2.39 -0.02 2.89 16 40 H 0.38 19.23 6.93 -74.05 -0.51 18.72 16 41 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 42 H 0.07 2.57 6.90 -2.38 -0.02 2.55 16 43 H 0.09 3.13 8.02 -2.39 -0.02 3.12 16 Total: -1.00 -77.63 368.26 1.09 -76.55 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.16 Total: 27.89 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 6.93 Total: 23.20 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -5.65 Total: -102.74 kcal Atomic # 8 Polarization: -64.27 SS G_CDS: -2.06 Total: -66.33 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -77.63 1.09 -76.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362939432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.071 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds