Wall clock time and date at job start Tue Mar 31 2020 21:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47329 * 2 1 4 4 C 1.52998 * 109.47375 * 239.99485 * 2 1 3 5 5 S 1.81399 * 109.46945 * 65.00252 * 4 2 1 6 6 O 1.42101 * 110.54449 * 68.37225 * 5 4 2 7 7 O 1.42101 * 110.54268 * 291.62910 * 5 4 2 8 8 N 1.65598 * 104.45060 * 179.97438 * 5 4 2 9 9 C 1.46497 * 120.00244 * 270.00103 * 8 5 4 10 10 C 1.50703 * 109.47124 * 265.00133 * 9 8 5 11 11 H 1.08004 * 119.99979 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99921 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00065 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47426 * 89.99418 * 14 12 10 16 16 H 1.48503 * 109.46701 * 210.00003 * 14 12 10 17 17 H 1.48503 * 109.47051 * 329.99379 * 14 12 10 18 18 C 1.46504 * 119.99436 * 90.00116 * 8 5 4 19 19 C 1.50707 * 109.46935 * 95.00474 * 18 8 5 20 20 C 1.38227 * 119.62059 * 95.01845 * 19 18 8 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 18 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 274.99275 * 19 18 8 25 25 C 1.53005 * 109.47034 * 119.99769 * 2 1 3 26 26 C 1.53000 * 117.49797 * 248.62240 * 25 2 1 27 27 C 1.52996 * 59.99981 * 252.50995 * 26 25 2 28 28 H 1.09001 * 109.47381 * 300.00527 * 1 2 3 29 29 H 1.08999 * 109.47003 * 59.99836 * 1 2 3 30 30 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47002 * 305.00497 * 4 2 1 32 32 H 1.09000 * 109.47407 * 184.99746 * 4 2 1 33 33 H 1.08999 * 109.47232 * 24.99515 * 9 8 5 34 34 H 1.08992 * 109.47302 * 145.00348 * 9 8 5 35 35 H 0.97010 * 119.99840 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47679 * 334.99942 * 18 8 5 37 37 H 1.09003 * 109.46652 * 214.99902 * 18 8 5 38 38 H 1.07998 * 120.41916 * 359.95342 * 20 19 18 39 39 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 40 40 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 41 41 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 42 42 H 1.09005 * 115.55043 * 34.32702 * 25 2 1 43 43 H 1.09000 * 117.50135 * 359.97438 * 26 25 2 44 44 H 1.09005 * 117.49720 * 145.02217 * 26 25 2 45 45 H 1.09008 * 117.50039 * 252.51185 * 27 26 25 46 46 H 1.08996 * 117.49768 * 107.49152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 16 1.5602 0.2154 -2.7266 6 8 2.2660 1.4473 -2.7870 7 8 0.1521 0.1682 -2.9114 8 7 2.1685 -0.6654 -3.9900 9 6 3.5214 -0.3988 -4.4847 10 6 3.4512 0.5525 -5.6515 11 1 2.4944 0.9212 -5.9908 12 6 4.6082 0.9512 -6.2863 13 7 5.7732 0.5019 -5.8734 14 14 4.5213 2.1310 -7.7322 15 1 4.6063 3.5282 -7.2368 16 1 5.6517 1.8640 -8.6574 17 1 3.2366 1.9382 -8.4517 18 6 1.3536 -1.7114 -4.6130 19 6 0.6459 -1.1462 -5.8176 20 6 1.2076 -1.2945 -7.0719 21 6 0.5458 -0.7755 -8.1739 22 6 -0.6566 -0.1152 -7.9712 23 6 -1.1569 -0.0062 -6.6877 24 7 -0.5021 -0.5164 -5.6628 25 6 2.0400 -0.7212 1.2493 26 6 2.7418 0.1227 2.3152 27 6 3.5549 -0.8280 1.4344 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 4.1182 0.0463 -3.6886 34 1 3.9818 -1.3333 -4.8051 35 1 6.5873 0.7828 -6.3199 36 1 0.6171 -2.0739 -3.8958 37 1 1.9957 -2.5361 -4.9226 38 1 2.1484 -1.8111 -7.1922 39 1 0.9589 -0.8796 -9.1664 40 1 -1.1975 0.3047 -8.8063 41 1 -2.0947 0.5030 -6.5218 42 1 1.4310 -1.5585 1.5904 43 1 2.8407 1.1917 2.1262 44 1 2.5946 -0.1592 3.3578 45 1 3.9427 -1.7355 1.8975 46 1 4.1883 -0.3845 0.6662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364765542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:03 Heat of formation + Delta-G solvation = -10.182180 kcal Electronic energy + Delta-G solvation = -28448.944514 eV Core-core repulsion = 24659.771978 eV Total energy + Delta-G solvation = -3789.172536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.61305 -38.27692 -36.35150 -35.79266 -35.11073 -33.43909 -32.65232 -31.83750 -30.89997 -27.66633 -27.45256 -25.31167 -23.38632 -22.97745 -22.43579 -22.35763 -21.40201 -20.01430 -18.09267 -17.05245 -16.67129 -16.26102 -15.89509 -15.83967 -15.56503 -15.30212 -14.88212 -14.58372 -14.39963 -14.06902 -13.55502 -13.24336 -13.14829 -12.85306 -12.72651 -12.57554 -12.25177 -12.02907 -11.75557 -11.64408 -11.54142 -11.49072 -11.46087 -11.14552 -11.08403 -11.05509 -10.94465 -10.68639 -10.50587 -10.39155 -10.12120 -10.00925 -9.92172 -9.65312 -9.28897 -8.86061 -8.52330 -8.37555 -8.03335 -6.04992 -4.05970 0.90148 1.65311 1.87249 3.31363 3.38097 3.38706 3.43957 3.70232 4.37918 4.45398 4.46426 4.54242 4.65752 4.80616 4.83863 4.86291 5.04290 5.11435 5.21582 5.26827 5.29707 5.30911 5.45807 5.50026 5.56509 5.57546 5.60173 5.68554 5.79594 5.81339 5.93879 5.96307 6.03944 6.08704 6.14766 6.16986 6.27637 6.30852 6.35763 6.65727 6.72885 7.16066 7.23935 7.36974 7.56853 7.93631 8.22910 8.60771 8.96363 9.58136 11.03916 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.004685 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.575819 B = 5975.312754 C = 7594.649549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.047 4.047 3 H 0.081 0.919 4 C -0.638 4.638 5 S 2.598 3.402 6 O -0.942 6.942 7 O -0.942 6.942 8 N -0.982 5.982 9 C 0.253 3.747 10 C -0.511 4.511 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.186 3.814 19 C 0.120 3.880 20 C -0.124 4.124 21 C -0.087 4.087 22 C -0.181 4.181 23 C 0.084 3.916 24 N -0.453 5.453 25 C -0.139 4.139 26 C -0.182 4.182 27 C -0.182 4.182 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 -6.860 7.705 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.066 4.066 3 H 0.099 0.901 4 C -0.764 4.764 5 S 2.689 3.311 6 O -0.932 6.932 7 O -0.932 6.932 8 N -0.819 5.819 9 C 0.132 3.868 10 C -0.551 4.551 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.058 3.942 19 C -0.020 4.020 20 C -0.145 4.145 21 C -0.113 4.113 22 C -0.201 4.201 23 C -0.073 4.073 24 N -0.162 5.162 25 C -0.158 4.158 26 C -0.219 4.219 27 C -0.219 4.219 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.154 0.846 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.373 -5.989 8.459 13.974 hybrid contribution 1.004 0.179 -1.534 1.842 sum -8.369 -5.810 6.925 12.319 Atomic orbital electron populations 1.22247 0.93615 1.03474 1.03849 1.20397 0.96396 0.98550 0.91298 0.90109 1.30923 1.11991 1.15041 1.18453 1.05518 0.74706 0.75543 0.75340 1.93623 1.74520 1.39626 1.85428 1.93605 1.28914 1.86541 1.84123 1.57585 1.26852 1.51495 1.45984 1.19122 0.75343 0.96984 0.95376 1.21413 0.93038 1.26616 1.14002 0.92278 1.24858 0.95253 0.96235 0.97495 1.69908 0.97561 1.44796 1.41527 0.86644 0.77541 0.81850 0.82395 1.20544 1.21244 1.19798 1.19860 0.92618 0.89695 0.91992 1.21602 0.91002 0.94751 0.94693 1.21954 0.99716 0.99932 0.92880 1.21480 0.94493 0.96096 0.99253 1.22033 0.97729 1.01622 0.98716 1.22631 0.99207 0.97157 0.88311 1.67613 1.07690 1.07126 1.33821 1.22243 0.95039 1.01778 0.96765 1.23056 1.04791 0.97909 0.96105 1.23000 0.93950 1.01688 1.03216 0.91630 0.90218 0.91626 0.85574 0.85348 0.94393 0.94603 0.92833 0.89868 0.89344 0.84584 0.85599 0.85781 0.83599 0.87563 0.88605 0.88906 0.88788 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 8.86 37.16 0.33 -1.83 16 2 C -0.05 -0.61 2.54 -90.62 -0.23 -0.84 16 3 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 4 C -0.64 -8.95 5.53 37.16 0.21 -8.75 16 5 S 2.60 49.95 4.97 -107.50 -0.53 49.41 16 6 O -0.94 -22.56 16.98 -57.54 -0.98 -23.54 16 7 O -0.94 -18.88 13.96 -57.54 -0.80 -19.69 16 8 N -0.98 -19.61 2.72 -116.95 -0.32 -19.93 16 9 C 0.25 6.04 5.03 -5.19 -0.03 6.02 16 10 C -0.51 -13.87 8.27 -34.44 -0.28 -14.15 16 11 H 0.06 1.68 7.03 -52.48 -0.37 1.31 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.19 3.19 5.59 -5.19 -0.03 3.16 16 19 C 0.12 2.27 5.58 -82.58 -0.46 1.81 16 20 C -0.12 -2.24 8.62 -39.44 -0.34 -2.58 16 21 C -0.09 -1.42 10.18 -39.28 -0.40 -1.82 16 22 C -0.18 -2.79 10.11 -39.44 -0.40 -3.18 16 23 C 0.08 1.43 11.18 -17.55 -0.20 1.23 16 24 N -0.45 -8.89 9.50 -9.47 -0.09 -8.98 16 25 C -0.14 -1.53 5.15 -90.62 -0.47 -1.99 16 26 C -0.18 -1.83 10.18 -26.73 -0.27 -2.10 16 27 C -0.18 -1.95 9.67 -26.73 -0.26 -2.21 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.15 5.61 -51.93 -0.29 0.85 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.13 1.75 7.12 -51.92 -0.37 1.38 16 33 H 0.04 0.97 7.61 -51.93 -0.39 0.57 16 34 H 0.04 0.84 8.00 -51.93 -0.42 0.43 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.08 1.24 7.61 -51.93 -0.40 0.84 16 37 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 38 H 0.14 2.35 8.06 -52.49 -0.42 1.92 16 39 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 42 H 0.11 1.04 8.11 -51.93 -0.42 0.61 16 43 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 46 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -34.38 388.02 -11.31 -45.69 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.23 Total: 4.80 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.93 Total: -25.58 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.33 Total: -53.76 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.78 Total: -43.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 49.95 SS G_CDS: -0.53 Total: 49.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.38 -11.31 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364765542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.509 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds