Wall clock time and date at job start Tue Mar 31 2020 21:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47329 * 2 1 4 4 C 1.52998 * 109.47375 * 239.99485 * 2 1 3 5 5 S 1.81399 * 109.46945 * 65.00252 * 4 2 1 6 6 O 1.42101 * 110.54449 * 68.37225 * 5 4 2 7 7 O 1.42101 * 110.54268 * 291.62910 * 5 4 2 8 8 N 1.65598 * 104.45060 * 179.97438 * 5 4 2 9 9 C 1.46497 * 120.00244 * 270.00103 * 8 5 4 10 10 C 1.50703 * 109.47124 * 265.00133 * 9 8 5 11 11 H 1.08004 * 119.99979 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99921 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00065 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47426 * 89.99418 * 14 12 10 16 16 H 1.48503 * 109.46701 * 210.00003 * 14 12 10 17 17 H 1.48503 * 109.47051 * 329.99379 * 14 12 10 18 18 C 1.46504 * 119.99436 * 90.00116 * 8 5 4 19 19 C 1.50707 * 109.46935 * 95.00474 * 18 8 5 20 20 C 1.38227 * 119.62059 * 95.01845 * 19 18 8 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 18 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 274.99275 * 19 18 8 25 25 C 1.53005 * 109.47034 * 119.99769 * 2 1 3 26 26 C 1.53000 * 117.49797 * 248.62240 * 25 2 1 27 27 C 1.52996 * 59.99981 * 252.50995 * 26 25 2 28 28 H 1.09001 * 109.47381 * 300.00527 * 1 2 3 29 29 H 1.08999 * 109.47003 * 59.99836 * 1 2 3 30 30 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47002 * 305.00497 * 4 2 1 32 32 H 1.09000 * 109.47407 * 184.99746 * 4 2 1 33 33 H 1.08999 * 109.47232 * 24.99515 * 9 8 5 34 34 H 1.08992 * 109.47302 * 145.00348 * 9 8 5 35 35 H 0.97010 * 119.99840 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47679 * 334.99942 * 18 8 5 37 37 H 1.09003 * 109.46652 * 214.99902 * 18 8 5 38 38 H 1.07998 * 120.41916 * 359.95342 * 20 19 18 39 39 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 40 40 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 41 41 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 42 42 H 1.09005 * 115.55043 * 34.32702 * 25 2 1 43 43 H 1.09000 * 117.50135 * 359.97438 * 26 25 2 44 44 H 1.09005 * 117.49720 * 145.02217 * 26 25 2 45 45 H 1.09008 * 117.50039 * 252.51185 * 27 26 25 46 46 H 1.08996 * 117.49768 * 107.49152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 16 1.5602 0.2154 -2.7266 6 8 2.2660 1.4473 -2.7870 7 8 0.1521 0.1682 -2.9114 8 7 2.1685 -0.6654 -3.9900 9 6 3.5214 -0.3988 -4.4847 10 6 3.4512 0.5525 -5.6515 11 1 2.4944 0.9212 -5.9908 12 6 4.6082 0.9512 -6.2863 13 7 5.7732 0.5019 -5.8734 14 14 4.5213 2.1310 -7.7322 15 1 4.6063 3.5282 -7.2368 16 1 5.6517 1.8640 -8.6574 17 1 3.2366 1.9382 -8.4517 18 6 1.3536 -1.7114 -4.6130 19 6 0.6459 -1.1462 -5.8176 20 6 1.2076 -1.2945 -7.0719 21 6 0.5458 -0.7755 -8.1739 22 6 -0.6566 -0.1152 -7.9712 23 6 -1.1569 -0.0062 -6.6877 24 7 -0.5021 -0.5164 -5.6628 25 6 2.0400 -0.7212 1.2493 26 6 2.7418 0.1227 2.3152 27 6 3.5549 -0.8280 1.4344 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 4.1182 0.0463 -3.6886 34 1 3.9818 -1.3333 -4.8051 35 1 6.5873 0.7828 -6.3199 36 1 0.6171 -2.0739 -3.8958 37 1 1.9957 -2.5361 -4.9226 38 1 2.1484 -1.8111 -7.1922 39 1 0.9589 -0.8796 -9.1664 40 1 -1.1975 0.3047 -8.8063 41 1 -2.0947 0.5030 -6.5218 42 1 1.4310 -1.5585 1.5904 43 1 2.8407 1.1917 2.1262 44 1 2.5946 -0.1592 3.3578 45 1 3.9427 -1.7355 1.8975 46 1 4.1883 -0.3845 0.6662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364765542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:02 Heat of formation + Delta-G solvation = -31.845083 kcal Electronic energy + Delta-G solvation = -28449.883888 eV Core-core repulsion = 24659.771978 eV Total energy + Delta-G solvation = -3790.111910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93071 -39.18629 -37.96552 -37.37940 -36.71638 -34.63097 -34.43533 -33.19553 -32.32495 -29.40828 -28.63318 -26.89394 -24.50239 -24.33799 -24.09411 -23.16555 -22.76186 -20.98063 -19.62926 -18.68854 -18.44943 -17.66033 -17.30084 -17.22289 -16.74695 -16.60102 -16.40196 -16.18283 -15.49906 -15.38216 -14.93144 -14.66097 -14.48960 -14.22958 -14.06568 -13.92121 -13.79256 -13.46579 -13.17388 -13.16484 -12.89116 -12.84484 -12.64582 -12.59058 -12.45157 -12.43318 -12.41066 -12.25535 -12.10496 -11.86594 -11.74084 -11.35369 -11.03648 -10.88763 -10.62687 -10.55795 -10.26027 -9.83764 -9.61188 -8.16023 -6.22066 -0.56783 0.34071 0.55821 1.33373 1.37803 1.45396 1.91606 2.41383 2.79860 3.03930 3.14190 3.18570 3.34308 3.56875 3.63504 3.65711 3.85668 3.93502 4.06216 4.09522 4.16813 4.22490 4.29223 4.37191 4.40274 4.46031 4.61357 4.64279 4.67463 4.81974 4.83470 4.90413 4.91950 5.00245 5.06971 5.09201 5.22571 5.24773 5.28261 5.34292 5.39633 5.42046 5.52585 5.73950 5.93919 5.96990 6.18958 6.83346 7.27800 7.43971 8.91719 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.004685 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.575819 B = 5975.312754 C = 7594.649549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.053 4.053 3 H 0.065 0.935 4 C -0.605 4.605 5 S 2.589 3.411 6 O -1.003 7.003 7 O -0.957 6.957 8 N -0.986 5.986 9 C 0.267 3.733 10 C -0.514 4.514 11 H 0.040 0.960 12 C 0.018 3.982 13 N -0.924 5.924 14 Si 0.935 3.065 15 H -0.288 1.288 16 H -0.273 1.273 17 H -0.267 1.267 18 C 0.177 3.823 19 C 0.096 3.904 20 C -0.142 4.142 21 C -0.096 4.096 22 C -0.174 4.174 23 C 0.067 3.933 24 N -0.485 5.485 25 C -0.139 4.139 26 C -0.177 4.177 27 C -0.190 4.190 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.016 0.984 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.170 0.830 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 -8.165 8.260 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.074 4.074 3 H 0.084 0.916 4 C -0.737 4.737 5 S 2.686 3.314 6 O -0.994 6.994 7 O -0.947 6.947 8 N -0.822 5.822 9 C 0.144 3.856 10 C -0.553 4.553 11 H 0.058 0.942 12 C -0.181 4.181 13 N -0.565 5.565 14 Si 0.762 3.238 15 H -0.215 1.215 16 H -0.198 1.198 17 H -0.191 1.191 18 C 0.051 3.949 19 C -0.043 4.043 20 C -0.163 4.163 21 C -0.121 4.121 22 C -0.194 4.194 23 C -0.090 4.090 24 N -0.195 5.195 25 C -0.158 4.158 26 C -0.214 4.214 27 C -0.227 4.227 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.154 0.846 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.179 0.821 41 H 0.187 0.813 42 H 0.146 0.854 43 H 0.107 0.893 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.346 -7.279 8.949 15.495 hybrid contribution 1.212 0.587 -1.637 2.120 sum -9.133 -6.692 7.312 13.478 Atomic orbital electron populations 1.22274 0.92921 1.04619 1.03557 1.20509 0.97098 0.98033 0.91726 0.91624 1.30602 1.12703 1.15479 1.14881 1.05492 0.74059 0.75192 0.76623 1.93544 1.75395 1.43676 1.86790 1.93581 1.29387 1.86739 1.84983 1.57392 1.25467 1.52126 1.47193 1.18713 0.77193 0.96077 0.93610 1.21577 0.92107 1.26855 1.14796 0.94174 1.25489 0.95170 0.97673 0.99722 1.69975 0.97936 1.45912 1.42629 0.85895 0.78171 0.79484 0.80282 1.21502 1.19772 1.19115 1.20187 0.93095 0.89399 0.92254 1.21851 0.91384 0.95509 0.95565 1.22100 1.00028 1.00710 0.93443 1.21880 0.94785 0.95546 0.99935 1.22412 0.97326 1.00384 0.99250 1.23166 1.00034 0.97066 0.88719 1.67602 1.08427 1.08142 1.35292 1.22224 0.95306 1.02458 0.95820 1.23156 1.03736 0.97476 0.97044 1.23075 0.93638 1.02656 1.03306 0.89731 0.92768 0.89760 0.82044 0.84622 0.96615 0.94313 0.92662 0.87727 0.87111 0.84712 0.83170 0.82126 0.81340 0.85369 0.89346 0.86712 0.86997 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.06 8.86 71.98 0.64 -3.42 16 2 C -0.05 -1.32 2.54 -10.79 -0.03 -1.34 16 3 H 0.07 1.81 7.90 -2.38 -0.02 1.79 16 4 C -0.60 -16.19 5.53 71.98 0.40 -15.79 16 5 S 2.59 101.51 4.97 -56.49 -0.28 101.23 16 6 O -1.00 -50.54 16.98 -127.65 -2.17 -52.71 16 7 O -0.96 -38.94 13.96 -127.65 -1.78 -40.73 16 8 N -0.99 -39.88 2.72 -523.91 -1.42 -41.30 16 9 C 0.27 13.07 5.03 85.63 0.43 13.50 16 10 C -0.51 -28.51 8.27 25.60 0.21 -28.30 16 11 H 0.04 2.35 7.03 -2.91 -0.02 2.33 16 12 C 0.02 1.03 5.46 84.65 0.46 1.49 16 13 N -0.92 -53.29 13.29 21.44 0.28 -53.01 16 14 Si 0.94 45.02 29.54 68.60 2.03 47.04 16 15 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 C 0.18 6.02 5.59 85.63 0.48 6.50 16 19 C 0.10 3.66 5.58 42.55 0.24 3.89 16 20 C -0.14 -5.10 8.62 22.36 0.19 -4.90 16 21 C -0.10 -2.99 10.18 22.47 0.23 -2.76 16 22 C -0.17 -5.04 10.11 22.36 0.23 -4.81 16 23 C 0.07 2.22 11.18 84.67 0.95 3.17 16 24 N -0.48 -19.01 9.50 -183.88 -1.75 -20.76 16 25 C -0.14 -2.65 5.15 -10.79 -0.06 -2.70 16 26 C -0.18 -3.14 10.18 30.59 0.31 -2.83 16 27 C -0.19 -3.66 9.67 30.59 0.30 -3.37 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.54 5.61 -2.39 -0.01 1.53 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.16 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.14 3.56 7.12 -2.39 -0.02 3.54 16 33 H 0.02 0.84 7.61 -2.39 -0.02 0.82 16 34 H 0.04 1.86 8.00 -2.39 -0.02 1.84 16 35 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 36 H 0.10 3.02 7.61 -2.39 -0.02 3.00 16 37 H 0.11 3.16 7.90 -2.39 -0.02 3.14 16 38 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.13 1.94 8.11 -2.38 -0.02 1.92 16 43 H 0.09 1.70 8.05 -2.39 -0.02 1.68 16 44 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.08 1.85 7.58 -2.39 -0.02 1.83 16 Total: -1.00 -76.59 388.02 0.84 -75.74 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.96 Total: 26.16 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 4.98 Total: -41.68 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -2.89 Total: -115.07 kcal Atomic # 8 Polarization: -89.48 SS G_CDS: -3.95 Total: -93.43 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 101.51 SS G_CDS: -0.28 Total: 101.23 kcal Total: -76.59 0.84 -75.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364765542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.898 kcal (2) G-P(sol) polarization free energy of solvation -76.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds