Wall clock time and date at job start Tue Mar 31 2020 21:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46862 * 2 1 4 4 C 1.52998 * 109.46941 * 120.00011 * 2 1 3 5 5 S 1.81393 * 109.47395 * 294.99888 * 4 2 1 6 6 O 1.42101 * 110.54502 * 68.37391 * 5 4 2 7 7 O 1.42101 * 110.54589 * 291.62756 * 5 4 2 8 8 N 1.65599 * 104.45082 * 180.02562 * 5 4 2 9 9 C 1.46498 * 120.00304 * 270.00127 * 8 5 4 10 10 C 1.50700 * 109.47017 * 265.00028 * 9 8 5 11 11 H 1.08002 * 120.00395 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99988 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99747 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00046 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47502 * 89.99657 * 14 12 10 16 16 H 1.48502 * 109.46844 * 209.99851 * 14 12 10 17 17 H 1.48502 * 109.47091 * 329.99396 * 14 12 10 18 18 C 1.46504 * 120.00082 * 90.00317 * 8 5 4 19 19 C 1.50703 * 109.46750 * 265.00393 * 18 8 5 20 20 C 1.38223 * 119.62264 * 95.02018 * 19 18 8 21 21 C 1.38628 * 119.16031 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15778 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61279 * 274.99490 * 19 18 8 25 25 C 1.53001 * 109.46856 * 240.00322 * 2 1 3 26 26 C 1.53002 * 117.49909 * 128.62473 * 25 2 1 27 27 C 1.53001 * 117.50267 * 59.99914 * 25 2 1 28 28 H 1.09005 * 109.47207 * 59.99635 * 1 2 3 29 29 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46809 * 299.99967 * 1 2 3 31 31 H 1.08998 * 109.46723 * 174.99913 * 4 2 1 32 32 H 1.09008 * 109.46997 * 55.00281 * 4 2 1 33 33 H 1.08998 * 109.47038 * 24.99870 * 9 8 5 34 34 H 1.08997 * 109.47658 * 144.99897 * 9 8 5 35 35 H 0.97008 * 119.99777 * 180.02562 * 13 12 10 36 36 H 1.08989 * 109.47587 * 145.00058 * 18 8 5 37 37 H 1.08996 * 109.46786 * 24.99466 * 18 8 5 38 38 H 1.07995 * 120.41821 * 359.95030 * 20 19 18 39 39 H 1.08006 * 120.78822 * 180.02562 * 21 20 19 40 40 H 1.07993 * 120.42192 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.60956 * 180.27218 * 23 22 21 42 42 H 1.08999 * 115.54402 * 274.32726 * 25 2 1 43 43 H 1.09000 * 117.49434 * 359.97438 * 26 25 2 44 44 H 1.08996 * 117.49719 * 145.01476 * 26 25 2 45 45 H 1.08994 * 117.49986 * 214.97580 * 27 25 2 46 46 H 1.09003 * 117.49256 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 1.5602 0.2155 2.7266 6 8 0.1520 0.1683 2.9115 7 8 2.2659 1.4474 2.7870 8 7 2.1684 -0.6653 3.9901 9 6 1.3536 -1.7114 4.6131 10 6 0.6459 -1.1462 5.8176 11 1 0.7884 -0.1112 6.0914 12 6 -0.1844 -1.9501 6.5696 13 7 -0.3591 -3.2100 6.2353 14 14 -1.0622 -1.2493 8.0621 15 1 -2.3787 -0.7000 7.6495 16 1 -1.2670 -2.3244 9.0659 17 1 -0.2386 -0.1665 8.6576 18 6 3.5213 -0.3986 4.4849 19 6 4.4923 -1.3450 3.8272 20 6 5.1800 -0.9426 2.6978 21 6 6.0712 -1.8207 2.1009 22 6 6.2387 -3.0763 2.6651 23 6 5.5164 -3.4083 3.7954 24 7 4.6764 -2.5474 4.3363 25 6 2.0400 -0.7212 -1.2493 26 6 3.0742 0.0052 -2.1117 27 6 1.6357 -0.1494 -2.6097 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 0.6172 -2.0738 3.8959 34 1 1.9956 -2.5360 4.9228 35 1 -0.9435 -3.7755 6.7641 36 1 3.5482 -0.5428 5.5649 37 1 3.7986 0.6286 4.2484 38 1 5.0246 0.0433 2.2853 39 1 6.6227 -1.5335 1.2178 40 1 6.9244 -3.7860 2.2264 41 1 5.6444 -4.3826 4.2434 42 1 2.1267 -1.8044 -1.1642 43 1 3.3909 0.9971 -1.7892 44 1 3.8416 -0.6001 -2.5941 45 1 1.4569 -0.8564 -3.4197 46 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364765544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:06 Heat of formation + Delta-G solvation = -12.815120 kcal Electronic energy + Delta-G solvation = -28429.564775 eV Core-core repulsion = 24640.278067 eV Total energy + Delta-G solvation = -3789.286709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.05633 -38.35492 -36.56972 -35.83886 -35.30452 -33.53408 -32.68615 -32.30276 -31.17885 -27.54721 -27.53719 -25.44348 -23.59824 -23.38691 -22.52758 -22.43894 -21.58781 -20.00881 -18.24899 -17.14603 -16.90388 -16.42581 -16.17625 -15.95232 -15.67992 -15.46998 -15.28339 -14.70388 -14.39890 -14.04045 -13.98957 -13.42521 -13.28189 -13.12906 -13.01120 -12.68015 -12.31813 -12.07112 -11.85838 -11.79360 -11.68988 -11.57193 -11.53871 -11.29199 -11.12473 -11.08530 -10.99737 -10.66631 -10.57627 -10.46488 -10.08975 -10.05835 -9.97902 -9.77992 -9.66233 -9.23046 -8.94647 -8.34659 -8.05167 -5.96901 -3.99232 0.77996 1.17408 1.37519 3.27467 3.39166 3.44481 3.48800 3.62048 3.97219 4.26004 4.47095 4.50340 4.54878 4.57179 4.59120 4.77054 4.82552 4.90758 4.91706 5.09317 5.14391 5.20713 5.21155 5.35682 5.39149 5.45651 5.55389 5.59763 5.64633 5.67817 5.71158 5.80665 5.87690 5.94091 6.00154 6.07691 6.18784 6.19190 6.20255 6.35235 6.53491 6.78466 7.30469 7.42869 7.67422 8.00181 8.22272 8.30383 9.02012 9.64487 11.12091 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.005035 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.693281 B = 5560.223771 C = 7531.736826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.637 4.637 5 S 2.600 3.400 6 O -0.930 6.930 7 O -0.975 6.975 8 N -0.974 5.974 9 C 0.255 3.745 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.062 3.938 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.166 3.834 19 C 0.119 3.881 20 C -0.180 4.180 21 C -0.076 4.076 22 C -0.182 4.182 23 C 0.101 3.899 24 N -0.454 5.454 25 C -0.138 4.138 26 C -0.183 4.183 27 C -0.180 4.180 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.154 0.846 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 2.280 -15.225 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.064 4.064 3 H 0.098 0.902 4 C -0.764 4.764 5 S 2.692 3.308 6 O -0.920 6.920 7 O -0.965 6.965 8 N -0.811 5.811 9 C 0.133 3.867 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C 0.038 3.962 19 C -0.022 4.022 20 C -0.200 4.200 21 C -0.102 4.102 22 C -0.202 4.202 23 C -0.056 4.056 24 N -0.163 5.163 25 C -0.157 4.157 26 C -0.220 4.220 27 C -0.217 4.217 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.850 2.662 -14.324 18.166 hybrid contribution 0.435 -0.378 -0.374 0.687 sum 11.285 2.285 -14.699 18.671 Atomic orbital electron populations 1.22286 0.93571 1.04017 1.03688 1.20385 0.96494 0.98253 0.91260 0.90238 1.30942 1.11479 1.15628 1.18306 1.05322 0.75089 0.75015 0.75371 1.93625 1.28470 1.86282 1.83636 1.93500 1.75378 1.41274 1.86369 1.57470 1.22268 1.54592 1.46817 1.19169 0.89115 0.85238 0.93159 1.21438 1.26631 0.97237 1.10703 0.92144 1.24894 0.96428 0.94767 0.97858 1.69929 1.38160 1.05608 1.39894 0.86546 0.80215 0.78628 0.82327 1.20553 1.21282 1.19820 1.20144 0.79482 0.95353 1.01221 1.22140 0.94908 0.92611 0.92492 1.22132 0.98871 1.01399 0.97626 1.21512 0.96422 0.93463 0.98853 1.22120 1.02079 0.97615 0.98401 1.22877 0.91309 0.98787 0.92667 1.67677 1.15002 1.02238 1.31411 1.22248 1.03457 0.99288 0.90684 1.23059 0.92548 1.02155 1.04239 1.22966 0.98020 1.03443 0.97233 0.91557 0.91239 0.90352 0.85708 0.85061 0.94777 0.93305 0.92859 0.87460 0.88349 0.84726 0.85143 0.85188 0.82891 0.87509 0.88639 0.88902 0.88821 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.72 37.16 0.32 -2.07 16 2 C -0.04 -0.56 2.54 -90.62 -0.23 -0.80 16 3 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 4 C -0.64 -9.16 5.60 37.16 0.21 -8.95 16 5 S 2.60 49.64 5.02 -107.50 -0.54 49.10 16 6 O -0.93 -21.33 14.74 -57.54 -0.85 -22.18 16 7 O -0.97 -19.15 16.53 -57.54 -0.95 -20.10 16 8 N -0.97 -20.10 2.68 -116.95 -0.31 -20.42 16 9 C 0.25 6.41 5.01 -5.19 -0.03 6.39 16 10 C -0.52 -14.71 9.38 -34.44 -0.32 -15.04 16 11 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.17 2.96 5.96 -5.19 -0.03 2.93 16 19 C 0.12 1.89 6.36 -82.59 -0.53 1.37 16 20 C -0.18 -2.31 8.20 -39.44 -0.32 -2.63 16 21 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 22 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 23 C 0.10 1.35 11.18 -17.55 -0.20 1.15 16 24 N -0.45 -7.68 10.25 -9.47 -0.10 -7.78 16 25 C -0.14 -1.47 5.15 -90.62 -0.47 -1.94 16 26 C -0.18 -1.66 10.18 -26.73 -0.27 -1.94 16 27 C -0.18 -1.63 9.74 -26.73 -0.26 -1.89 16 28 H 0.07 0.73 7.29 -51.93 -0.38 0.35 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.22 5.61 -51.92 -0.29 0.93 16 31 H 0.12 1.58 6.51 -51.92 -0.34 1.24 16 32 H 0.13 1.87 8.14 -51.92 -0.42 1.45 16 33 H 0.03 0.91 7.61 -51.93 -0.40 0.51 16 34 H 0.05 1.28 8.08 -51.93 -0.42 0.86 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.11 2.03 8.11 -51.93 -0.42 1.61 16 37 H 0.10 1.57 6.71 -51.93 -0.35 1.22 16 38 H 0.13 1.52 8.03 -52.49 -0.42 1.09 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.11 1.13 8.11 -51.93 -0.42 0.71 16 43 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.10 0.83 7.61 -51.93 -0.39 0.44 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -34.14 389.62 -11.34 -45.48 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.16 Total: 3.93 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.02 Total: -25.29 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.33 Total: -53.97 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -1.80 Total: -42.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 49.64 SS G_CDS: -0.54 Total: 49.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.14 -11.34 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364765544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.667 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds