Wall clock time and date at job start Tue Mar 31 2020 21:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46862 * 2 1 4 4 C 1.52998 * 109.46941 * 120.00011 * 2 1 3 5 5 S 1.81393 * 109.47395 * 294.99888 * 4 2 1 6 6 O 1.42101 * 110.54502 * 68.37391 * 5 4 2 7 7 O 1.42101 * 110.54589 * 291.62756 * 5 4 2 8 8 N 1.65599 * 104.45082 * 180.02562 * 5 4 2 9 9 C 1.46498 * 120.00304 * 270.00127 * 8 5 4 10 10 C 1.50700 * 109.47017 * 265.00028 * 9 8 5 11 11 H 1.08002 * 120.00395 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99988 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99747 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00046 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47502 * 89.99657 * 14 12 10 16 16 H 1.48502 * 109.46844 * 209.99851 * 14 12 10 17 17 H 1.48502 * 109.47091 * 329.99396 * 14 12 10 18 18 C 1.46504 * 120.00082 * 90.00317 * 8 5 4 19 19 C 1.50703 * 109.46750 * 265.00393 * 18 8 5 20 20 C 1.38223 * 119.62264 * 95.02018 * 19 18 8 21 21 C 1.38628 * 119.16031 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42475 * 359.97438 * 21 20 19 23 23 C 1.38186 * 119.15778 * 0.02562 * 22 21 20 24 24 N 1.31856 * 119.61279 * 274.99490 * 19 18 8 25 25 C 1.53001 * 109.46856 * 240.00322 * 2 1 3 26 26 C 1.53002 * 117.49909 * 128.62473 * 25 2 1 27 27 C 1.53001 * 117.50267 * 59.99914 * 25 2 1 28 28 H 1.09005 * 109.47207 * 59.99635 * 1 2 3 29 29 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46809 * 299.99967 * 1 2 3 31 31 H 1.08998 * 109.46723 * 174.99913 * 4 2 1 32 32 H 1.09008 * 109.46997 * 55.00281 * 4 2 1 33 33 H 1.08998 * 109.47038 * 24.99870 * 9 8 5 34 34 H 1.08997 * 109.47658 * 144.99897 * 9 8 5 35 35 H 0.97008 * 119.99777 * 180.02562 * 13 12 10 36 36 H 1.08989 * 109.47587 * 145.00058 * 18 8 5 37 37 H 1.08996 * 109.46786 * 24.99466 * 18 8 5 38 38 H 1.07995 * 120.41821 * 359.95030 * 20 19 18 39 39 H 1.08006 * 120.78822 * 180.02562 * 21 20 19 40 40 H 1.07993 * 120.42192 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.60956 * 180.27218 * 23 22 21 42 42 H 1.08999 * 115.54402 * 274.32726 * 25 2 1 43 43 H 1.09000 * 117.49434 * 359.97438 * 26 25 2 44 44 H 1.08996 * 117.49719 * 145.01476 * 26 25 2 45 45 H 1.08994 * 117.49986 * 214.97580 * 27 25 2 46 46 H 1.09003 * 117.49256 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 1.5602 0.2155 2.7266 6 8 0.1520 0.1683 2.9115 7 8 2.2659 1.4474 2.7870 8 7 2.1684 -0.6653 3.9901 9 6 1.3536 -1.7114 4.6131 10 6 0.6459 -1.1462 5.8176 11 1 0.7884 -0.1112 6.0914 12 6 -0.1844 -1.9501 6.5696 13 7 -0.3591 -3.2100 6.2353 14 14 -1.0622 -1.2493 8.0621 15 1 -2.3787 -0.7000 7.6495 16 1 -1.2670 -2.3244 9.0659 17 1 -0.2386 -0.1665 8.6576 18 6 3.5213 -0.3986 4.4849 19 6 4.4923 -1.3450 3.8272 20 6 5.1800 -0.9426 2.6978 21 6 6.0712 -1.8207 2.1009 22 6 6.2387 -3.0763 2.6651 23 6 5.5164 -3.4083 3.7954 24 7 4.6764 -2.5474 4.3363 25 6 2.0400 -0.7212 -1.2493 26 6 3.0742 0.0052 -2.1117 27 6 1.6357 -0.1494 -2.6097 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 0.6172 -2.0738 3.8959 34 1 1.9956 -2.5360 4.9228 35 1 -0.9435 -3.7755 6.7641 36 1 3.5482 -0.5428 5.5649 37 1 3.7986 0.6286 4.2484 38 1 5.0246 0.0433 2.2853 39 1 6.6227 -1.5335 1.2178 40 1 6.9244 -3.7860 2.2264 41 1 5.6444 -4.3826 4.2434 42 1 2.1267 -1.8044 -1.1642 43 1 3.3909 0.9971 -1.7892 44 1 3.8416 -0.6001 -2.5941 45 1 1.4569 -0.8564 -3.4197 46 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364765544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:05 Heat of formation + Delta-G solvation = -34.771691 kcal Electronic energy + Delta-G solvation = -28430.516884 eV Core-core repulsion = 24640.278067 eV Total energy + Delta-G solvation = -3790.238817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08816 -39.20396 -38.16530 -37.45226 -36.90840 -34.69015 -34.51711 -33.31367 -32.48639 -29.32213 -28.72655 -27.02279 -24.64716 -24.43701 -24.21545 -23.09807 -22.80518 -20.92935 -19.80963 -18.73363 -18.55006 -17.65348 -17.60022 -17.23237 -16.95260 -16.62069 -16.36752 -16.32191 -15.74619 -15.34688 -15.08486 -14.70691 -14.44357 -14.34462 -14.20804 -13.96943 -13.83212 -13.68117 -13.21142 -13.07134 -13.05033 -12.90625 -12.74322 -12.73373 -12.56996 -12.43128 -12.39241 -12.32018 -12.11603 -11.92551 -11.78939 -11.50427 -11.02738 -10.87331 -10.75334 -10.57060 -10.36478 -9.95965 -9.70702 -8.17035 -6.27270 -0.70200 0.16827 0.45192 1.38144 1.40898 1.50208 1.76810 2.42528 2.81313 2.93054 2.96340 3.13399 3.19465 3.39319 3.43278 3.70414 3.76953 3.83617 4.03190 4.07035 4.11147 4.18266 4.26301 4.27217 4.30115 4.45531 4.52929 4.59411 4.67152 4.72203 4.79175 4.85750 4.85941 4.95880 5.00302 5.07627 5.21786 5.25036 5.29653 5.31015 5.32091 5.35414 5.50095 5.69179 5.84065 5.90185 6.15236 6.79706 7.20745 7.39923 8.91057 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.005035 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.693281 B = 5560.223771 C = 7531.736826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.046 4.046 3 H 0.087 0.913 4 C -0.602 4.602 5 S 2.593 3.407 6 O -0.980 6.980 7 O -0.986 6.986 8 N -0.984 5.984 9 C 0.277 3.723 10 C -0.540 4.540 11 H 0.050 0.950 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.954 3.046 15 H -0.277 1.277 16 H -0.274 1.274 17 H -0.267 1.267 18 C 0.163 3.837 19 C 0.093 3.907 20 C -0.179 4.179 21 C -0.068 4.068 22 C -0.164 4.164 23 C 0.081 3.919 24 N -0.504 5.504 25 C -0.152 4.152 26 C -0.174 4.174 27 C -0.175 4.175 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.012 0.988 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.166 2.228 -18.064 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.066 4.066 3 H 0.106 0.894 4 C -0.735 4.735 5 S 2.691 3.309 6 O -0.971 6.971 7 O -0.977 6.977 8 N -0.819 5.819 9 C 0.154 3.846 10 C -0.580 4.580 11 H 0.068 0.932 12 C -0.187 4.187 13 N -0.566 5.566 14 Si 0.779 3.221 15 H -0.203 1.203 16 H -0.199 1.199 17 H -0.191 1.191 18 C 0.036 3.964 19 C -0.046 4.046 20 C -0.200 4.200 21 C -0.093 4.093 22 C -0.184 4.184 23 C -0.076 4.076 24 N -0.214 5.214 25 C -0.172 4.172 26 C -0.210 4.210 27 C -0.212 4.212 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.168 0.832 39 H 0.191 0.809 40 H 0.187 0.813 41 H 0.184 0.816 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.098 2.652 -17.106 21.707 hybrid contribution -0.168 -0.379 0.384 0.565 sum 12.930 2.272 -16.722 21.259 Atomic orbital electron populations 1.22345 0.94471 1.03863 1.03540 1.20487 0.95903 0.98851 0.91383 0.89425 1.30616 1.13084 1.14488 1.15290 1.05302 0.73955 0.75190 0.76458 1.93567 1.31470 1.87030 1.84993 1.93470 1.74989 1.42196 1.87005 1.57288 1.23058 1.53356 1.48245 1.18559 0.88490 0.85747 0.91835 1.21784 1.27218 0.96896 1.12086 0.93194 1.25712 0.97167 0.95153 1.00708 1.70025 1.38819 1.06618 1.41102 0.85616 0.78922 0.78388 0.79156 1.20325 1.19916 1.19136 1.20179 0.79022 0.97066 1.00130 1.21741 0.96089 0.92436 0.94294 1.22282 0.98718 1.02540 0.96448 1.21996 0.95225 0.92640 0.99472 1.22524 1.00927 0.98301 0.96652 1.23255 0.91437 0.98910 0.94026 1.67512 1.17090 1.03347 1.33438 1.22119 1.05641 0.99275 0.90123 1.23181 0.92760 1.02226 1.02877 1.23081 0.98317 1.03574 0.96226 0.89022 0.91477 0.93189 0.83139 0.84741 0.96978 0.95093 0.92552 0.90128 0.86963 0.83198 0.80936 0.81293 0.81611 0.87272 0.88280 0.87269 0.87524 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.88 8.72 71.98 0.63 -4.26 16 2 C -0.05 -1.10 2.54 -10.79 -0.03 -1.13 16 3 H 0.09 1.96 7.90 -2.38 -0.02 1.94 16 4 C -0.60 -16.75 5.60 71.98 0.40 -16.35 16 5 S 2.59 102.25 5.02 -56.49 -0.28 101.97 16 6 O -0.98 -47.63 14.74 -127.65 -1.88 -49.51 16 7 O -0.99 -39.33 16.53 -127.65 -2.11 -41.44 16 8 N -0.98 -42.74 2.68 -523.93 -1.41 -44.15 16 9 C 0.28 14.85 5.01 85.63 0.43 15.28 16 10 C -0.54 -32.18 9.38 25.60 0.24 -31.94 16 11 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 12 C 0.01 0.68 5.46 84.66 0.46 1.15 16 13 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 14 Si 0.95 46.66 29.54 68.60 2.03 48.69 16 15 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 C 0.16 6.13 5.96 85.63 0.51 6.64 16 19 C 0.09 3.01 6.36 42.55 0.27 3.28 16 20 C -0.18 -4.19 8.20 22.36 0.18 -4.01 16 21 C -0.07 -1.15 10.18 22.47 0.23 -0.92 16 22 C -0.16 -2.91 10.11 22.36 0.23 -2.68 16 23 C 0.08 2.06 11.18 84.67 0.95 3.01 16 24 N -0.50 -17.42 10.25 -183.88 -1.88 -19.31 16 25 C -0.15 -2.76 5.15 -10.79 -0.06 -2.82 16 26 C -0.17 -2.43 10.18 30.60 0.31 -2.12 16 27 C -0.17 -2.55 9.74 30.60 0.30 -2.25 16 28 H 0.09 1.89 7.29 -2.38 -0.02 1.87 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.61 5.61 -2.38 -0.01 1.60 16 31 H 0.15 3.44 6.51 -2.39 -0.02 3.42 16 32 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 33 H 0.01 0.70 7.61 -2.39 -0.02 0.68 16 34 H 0.03 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 36 H 0.08 3.35 8.11 -2.39 -0.02 3.33 16 37 H 0.11 3.75 6.71 -2.39 -0.02 3.73 16 38 H 0.15 2.94 8.03 -2.91 -0.02 2.92 16 39 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 42 H 0.11 1.95 8.11 -2.39 -0.02 1.93 16 43 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.10 1.39 7.61 -2.39 -0.02 1.37 16 Total: -1.00 -78.74 389.62 0.76 -77.98 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.96 Total: 21.20 kcal Atomic # 6 Polarization: -44.17 SS G_CDS: 5.05 Total: -39.12 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -3.01 Total: -119.76 kcal Atomic # 8 Polarization: -86.96 SS G_CDS: -3.99 Total: -90.95 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 16 Polarization: 102.25 SS G_CDS: -0.28 Total: 101.97 kcal Total: -78.74 0.76 -77.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364765544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.206 kcal (2) G-P(sol) polarization free energy of solvation -78.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds