Wall clock time and date at job start Tue Mar 31 2020 21:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47509 * 2 1 4 4 C 1.52995 * 109.47192 * 120.00482 * 2 1 3 5 5 S 1.81395 * 109.47073 * 294.99682 * 4 2 1 6 6 O 1.42091 * 110.54467 * 60.78160 * 5 4 2 7 7 O 1.42104 * 110.53974 * 284.03223 * 5 4 2 8 8 N 1.65599 * 104.45311 * 172.40922 * 5 4 2 9 9 C 1.46505 * 120.00319 * 98.74116 * 8 5 4 10 10 C 1.50695 * 109.47150 * 243.10615 * 9 8 5 11 11 H 1.08001 * 119.99659 * 246.11289 * 10 9 8 12 12 C 1.37876 * 120.00298 * 66.10891 * 10 9 8 13 13 N 1.31519 * 119.99645 * 29.16278 * 12 10 9 14 14 Si 1.86798 * 120.00018 * 209.15349 * 12 10 9 15 15 H 1.48497 * 109.46992 * 60.00712 * 14 12 10 16 16 H 1.48503 * 109.47042 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47506 * 300.00309 * 14 12 10 18 18 C 1.46503 * 119.99965 * 278.74607 * 8 5 4 19 19 C 1.50696 * 109.46979 * 259.33070 * 18 8 5 20 20 C 1.38678 * 120.41476 * 274.19775 * 19 18 8 21 21 C 1.38636 * 118.41638 * 179.78467 * 20 19 18 22 22 C 1.38230 * 119.15763 * 0.51341 * 21 20 19 23 23 N 1.31848 * 120.76831 * 359.72808 * 22 21 20 24 24 C 1.31889 * 121.72568 * 359.97438 * 23 22 21 25 25 C 1.53010 * 109.46798 * 240.00257 * 2 1 3 26 26 C 1.52995 * 117.49974 * 128.62328 * 25 2 1 27 27 C 1.52999 * 117.49686 * 59.99907 * 25 2 1 28 28 H 1.09001 * 109.47044 * 59.99250 * 1 2 3 29 29 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46927 * 299.99861 * 1 2 3 31 31 H 1.09005 * 109.47147 * 175.00040 * 4 2 1 32 32 H 1.09004 * 109.47721 * 54.99833 * 4 2 1 33 33 H 1.09001 * 109.46659 * 123.10080 * 9 8 5 34 34 H 1.09000 * 109.46569 * 3.10420 * 9 8 5 35 35 H 0.96999 * 119.99813 * 174.79738 * 13 12 10 36 36 H 1.09005 * 109.46588 * 19.32827 * 18 8 5 37 37 H 1.08994 * 109.47195 * 139.32459 * 18 8 5 38 38 H 1.07995 * 120.78819 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.41431 * 180.21913 * 21 20 19 40 40 H 1.07999 * 119.61263 * 179.74537 * 22 21 20 41 41 H 1.08000 * 119.61696 * 180.02562 * 24 23 22 42 42 H 1.09001 * 115.54611 * 274.33188 * 25 2 1 43 43 H 1.09010 * 117.49997 * 359.97438 * 26 25 2 44 44 H 1.08999 * 117.50403 * 145.01979 * 26 25 2 45 45 H 1.08999 * 117.49481 * 214.97170 * 27 25 2 46 46 H 1.08997 * 117.50183 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 1.5602 0.2154 2.7265 6 8 0.1456 0.3159 2.8157 7 8 2.3872 1.3606 2.8811 8 7 1.9805 -0.7657 3.9926 9 6 3.2374 -0.5379 4.7101 10 6 4.1368 -1.7351 4.5403 11 1 4.3868 -2.3480 5.3936 12 6 4.6405 -2.0479 3.2955 13 7 4.8483 -1.0960 2.4121 14 14 5.0280 -3.8236 2.8641 15 1 3.7911 -4.6389 2.9657 16 1 5.5543 -3.8925 1.4771 17 1 6.0473 -4.3509 3.8065 18 6 1.0955 -1.8617 4.3952 19 6 0.3014 -1.4467 5.6068 20 6 0.8278 -1.6067 6.8798 21 6 0.0632 -1.2067 7.9649 22 6 -1.1937 -0.6756 7.7440 23 7 -1.6642 -0.5429 6.5195 24 6 -0.9626 -0.9071 5.4637 25 6 2.0399 -0.7213 -1.2494 26 6 3.0740 0.0051 -2.1118 27 6 1.6356 -0.1494 -2.6097 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 3.0288 -0.3874 5.7693 34 1 3.7303 0.3469 4.3074 35 1 5.2724 -1.3047 1.5650 36 1 0.4143 -2.0976 3.5775 37 1 1.6927 -2.7412 4.6358 38 1 1.8115 -2.0291 7.0222 39 1 0.4430 -1.3132 8.9703 40 1 -1.7972 -0.3655 8.5842 41 1 -1.3812 -0.7827 4.4759 42 1 2.1266 -1.8045 -1.1644 43 1 3.3909 0.9971 -1.7894 44 1 3.8415 -0.6001 -2.5943 45 1 1.4567 -0.8565 -3.4197 46 1 1.0059 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364777971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:12 Heat of formation + Delta-G solvation = -14.037385 kcal Electronic energy + Delta-G solvation = -28827.222787 eV Core-core repulsion = 25037.883076 eV Total energy + Delta-G solvation = -3789.339710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.76888 -38.05918 -36.29691 -35.92704 -35.05960 -33.29606 -32.89017 -31.82673 -30.92867 -27.77295 -26.96873 -25.38502 -23.29432 -23.18317 -22.54632 -22.16219 -21.34529 -19.73435 -18.02719 -16.96661 -16.77988 -16.46686 -16.02951 -15.81559 -15.33709 -15.26205 -14.81990 -14.75439 -14.19608 -13.92609 -13.59293 -13.22365 -13.16597 -13.01052 -12.70834 -12.56972 -12.46730 -12.04694 -11.64217 -11.59169 -11.48535 -11.45318 -11.36261 -11.15141 -11.07629 -10.95303 -10.88223 -10.77195 -10.56924 -10.30413 -10.23788 -9.78458 -9.67838 -9.46501 -9.41129 -9.14028 -8.69306 -8.51278 -7.87483 -6.42602 -4.34815 1.15622 1.49655 1.67492 3.08191 3.18134 3.21544 3.58726 3.90905 4.15374 4.22601 4.55427 4.76519 4.79185 4.83889 4.93278 5.02102 5.11617 5.15011 5.19672 5.31278 5.34404 5.46032 5.49984 5.53221 5.59956 5.69313 5.70403 5.88339 5.94973 5.99379 6.00869 6.11016 6.20240 6.24804 6.27737 6.38260 6.46803 6.50287 6.54924 6.71688 6.81974 7.03146 7.09023 7.51689 7.56822 7.80932 8.07629 8.32330 8.65377 9.24209 10.60020 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.005374 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.518695 B = 5209.003401 C = 6977.269893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 H 0.074 0.926 4 C -0.633 4.633 5 S 2.603 3.397 6 O -0.985 6.985 7 O -0.959 6.959 8 N -0.971 5.971 9 C 0.226 3.774 10 C -0.536 4.536 11 H 0.064 0.936 12 C 0.088 3.912 13 N -0.857 5.857 14 Si 0.869 3.131 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.172 3.828 19 C -0.139 4.139 20 C -0.057 4.057 21 C -0.183 4.183 22 C 0.085 3.915 23 N -0.493 5.493 24 C 0.114 3.886 25 C -0.133 4.133 26 C -0.179 4.179 27 C -0.184 4.184 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.115 0.885 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.271 0.729 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.163 0.837 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.786 -2.070 -2.037 7.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.063 4.063 3 H 0.092 0.908 4 C -0.762 4.762 5 S 2.699 3.301 6 O -0.976 6.976 7 O -0.950 6.950 8 N -0.809 5.809 9 C 0.106 3.894 10 C -0.576 4.576 11 H 0.082 0.918 12 C -0.119 4.119 13 N -0.493 5.493 14 Si 0.695 3.305 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.199 1.199 18 C 0.045 3.955 19 C -0.143 4.143 20 C -0.083 4.083 21 C -0.203 4.203 22 C -0.073 4.073 23 N -0.202 5.202 24 C -0.044 4.044 25 C -0.152 4.152 26 C -0.216 4.216 27 C -0.221 4.221 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.133 0.867 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.180 0.820 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.003 -0.787 -2.285 8.359 hybrid contribution 1.637 -2.133 -0.547 2.744 sum -6.365 -2.920 -2.832 7.554 Atomic orbital electron populations 1.22373 0.94264 1.03296 1.03830 1.20359 0.95703 0.98345 0.91930 0.90756 1.30858 1.16088 1.13148 1.16075 1.05062 0.73472 0.75640 0.75918 1.93440 1.31119 1.86860 1.86134 1.93522 1.69280 1.47299 1.84864 1.58360 1.30906 1.45272 1.46338 1.19168 0.80196 0.98424 0.91573 1.21326 1.29728 1.12469 0.94096 0.91827 1.25012 0.93455 0.96790 0.96657 1.70036 1.38247 1.31715 1.09322 0.87019 0.79107 0.86487 0.77886 1.19641 1.21064 1.19882 1.19763 0.90916 0.91926 0.92893 1.21457 0.96062 1.00088 0.96734 1.21619 0.99424 0.95496 0.91785 1.22086 0.96316 1.02034 0.99840 1.22659 0.93787 0.96183 0.94630 1.67693 1.36784 1.16418 0.99285 1.22947 0.91080 0.92495 0.97847 1.22215 1.03313 0.99186 0.90486 1.23029 0.92229 1.02367 1.04004 1.22958 0.98425 1.03316 0.97440 0.92175 0.91980 0.89583 0.81563 0.86691 0.95780 0.90890 0.91871 0.91136 0.88912 0.84426 0.85341 0.83523 0.82003 0.87768 0.88568 0.88964 0.89123 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.72 37.16 0.32 -2.30 16 2 C -0.04 -0.69 2.54 -90.62 -0.23 -0.92 16 3 H 0.07 1.22 7.90 -51.93 -0.41 0.81 16 4 C -0.63 -11.56 5.60 37.16 0.21 -11.35 16 5 S 2.60 53.76 5.17 -107.50 -0.56 53.20 16 6 O -0.99 -19.90 13.35 -57.54 -0.77 -20.67 16 7 O -0.96 -23.48 16.30 -57.54 -0.94 -24.41 16 8 N -0.97 -19.92 2.77 -116.95 -0.32 -20.25 16 9 C 0.23 5.17 5.82 -5.19 -0.03 5.14 16 10 C -0.54 -12.62 8.37 -34.44 -0.29 -12.91 16 11 H 0.06 1.48 7.97 -52.49 -0.42 1.06 16 12 C 0.09 2.07 5.29 -17.82 -0.09 1.98 16 13 N -0.86 -20.93 10.85 55.43 0.60 -20.33 16 14 Si 0.87 18.29 29.63 -169.99 -5.04 13.25 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 16 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 C 0.17 3.04 5.40 -5.19 -0.03 3.01 16 19 C -0.14 -2.39 5.41 -104.48 -0.57 -2.95 16 20 C -0.06 -0.88 9.22 -39.27 -0.36 -1.25 16 21 C -0.18 -2.52 10.11 -39.44 -0.40 -2.91 16 22 C 0.08 1.22 11.18 -17.55 -0.20 1.02 16 23 N -0.49 -8.46 10.36 -13.25 -0.14 -8.60 16 24 C 0.11 1.99 10.53 -17.55 -0.18 1.80 16 25 C -0.13 -1.88 5.15 -90.62 -0.47 -2.35 16 26 C -0.18 -2.36 10.18 -26.73 -0.27 -2.63 16 27 C -0.18 -2.18 9.74 -26.73 -0.26 -2.44 16 28 H 0.06 0.75 7.29 -51.93 -0.38 0.37 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.38 5.27 -51.93 -0.27 1.11 16 31 H 0.17 3.41 5.39 -51.92 -0.28 3.13 16 32 H 0.11 1.88 8.14 -51.92 -0.42 1.46 16 33 H 0.02 0.52 7.47 -51.93 -0.39 0.13 16 34 H 0.07 1.88 6.42 -51.93 -0.33 1.55 16 35 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 36 H 0.07 1.10 7.59 -51.93 -0.39 0.70 16 37 H 0.09 1.61 7.43 -51.93 -0.39 1.22 16 38 H 0.14 2.05 8.05 -52.49 -0.42 1.63 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.16 2.80 7.24 -52.49 -0.38 2.42 16 42 H 0.10 1.47 8.11 -51.93 -0.42 1.04 16 43 H 0.10 1.28 8.05 -51.92 -0.42 0.86 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.09 1.04 7.61 -51.93 -0.39 0.64 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -28.27 381.79 -11.22 -39.49 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -6.97 Total: 11.62 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -2.85 Total: -29.06 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.14 Total: -49.18 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.71 Total: -45.08 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.04 Total: 13.25 kcal Atomic # 16 Polarization: 53.76 SS G_CDS: -0.56 Total: 53.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.27 -11.22 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364777971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.453 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds