Wall clock time and date at job start Tue Mar 31 2020 21:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47509 * 2 1 4 4 C 1.52995 * 109.47192 * 120.00482 * 2 1 3 5 5 S 1.81395 * 109.47073 * 294.99682 * 4 2 1 6 6 O 1.42091 * 110.54467 * 60.78160 * 5 4 2 7 7 O 1.42104 * 110.53974 * 284.03223 * 5 4 2 8 8 N 1.65599 * 104.45311 * 172.40922 * 5 4 2 9 9 C 1.46505 * 120.00319 * 98.74116 * 8 5 4 10 10 C 1.50695 * 109.47150 * 243.10615 * 9 8 5 11 11 H 1.08001 * 119.99659 * 246.11289 * 10 9 8 12 12 C 1.37876 * 120.00298 * 66.10891 * 10 9 8 13 13 N 1.31519 * 119.99645 * 29.16278 * 12 10 9 14 14 Si 1.86798 * 120.00018 * 209.15349 * 12 10 9 15 15 H 1.48497 * 109.46992 * 60.00712 * 14 12 10 16 16 H 1.48503 * 109.47042 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47506 * 300.00309 * 14 12 10 18 18 C 1.46503 * 119.99965 * 278.74607 * 8 5 4 19 19 C 1.50696 * 109.46979 * 259.33070 * 18 8 5 20 20 C 1.38678 * 120.41476 * 274.19775 * 19 18 8 21 21 C 1.38636 * 118.41638 * 179.78467 * 20 19 18 22 22 C 1.38230 * 119.15763 * 0.51341 * 21 20 19 23 23 N 1.31848 * 120.76831 * 359.72808 * 22 21 20 24 24 C 1.31889 * 121.72568 * 359.97438 * 23 22 21 25 25 C 1.53010 * 109.46798 * 240.00257 * 2 1 3 26 26 C 1.52995 * 117.49974 * 128.62328 * 25 2 1 27 27 C 1.52999 * 117.49686 * 59.99907 * 25 2 1 28 28 H 1.09001 * 109.47044 * 59.99250 * 1 2 3 29 29 H 1.08997 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46927 * 299.99861 * 1 2 3 31 31 H 1.09005 * 109.47147 * 175.00040 * 4 2 1 32 32 H 1.09004 * 109.47721 * 54.99833 * 4 2 1 33 33 H 1.09001 * 109.46659 * 123.10080 * 9 8 5 34 34 H 1.09000 * 109.46569 * 3.10420 * 9 8 5 35 35 H 0.96999 * 119.99813 * 174.79738 * 13 12 10 36 36 H 1.09005 * 109.46588 * 19.32827 * 18 8 5 37 37 H 1.08994 * 109.47195 * 139.32459 * 18 8 5 38 38 H 1.07995 * 120.78819 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.41431 * 180.21913 * 21 20 19 40 40 H 1.07999 * 119.61263 * 179.74537 * 22 21 20 41 41 H 1.08000 * 119.61696 * 180.02562 * 24 23 22 42 42 H 1.09001 * 115.54611 * 274.33188 * 25 2 1 43 43 H 1.09010 * 117.49997 * 359.97438 * 26 25 2 44 44 H 1.08999 * 117.50403 * 145.01979 * 26 25 2 45 45 H 1.08999 * 117.49481 * 214.97170 * 27 25 2 46 46 H 1.08997 * 117.50183 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 1.5602 0.2154 2.7265 6 8 0.1456 0.3159 2.8157 7 8 2.3872 1.3606 2.8811 8 7 1.9805 -0.7657 3.9926 9 6 3.2374 -0.5379 4.7101 10 6 4.1368 -1.7351 4.5403 11 1 4.3868 -2.3480 5.3936 12 6 4.6405 -2.0479 3.2955 13 7 4.8483 -1.0960 2.4121 14 14 5.0280 -3.8236 2.8641 15 1 3.7911 -4.6389 2.9657 16 1 5.5543 -3.8925 1.4771 17 1 6.0473 -4.3509 3.8065 18 6 1.0955 -1.8617 4.3952 19 6 0.3014 -1.4467 5.6068 20 6 0.8278 -1.6067 6.8798 21 6 0.0632 -1.2067 7.9649 22 6 -1.1937 -0.6756 7.7440 23 7 -1.6642 -0.5429 6.5195 24 6 -0.9626 -0.9071 5.4637 25 6 2.0399 -0.7213 -1.2494 26 6 3.0740 0.0051 -2.1118 27 6 1.6356 -0.1494 -2.6097 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1264 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 3.0288 -0.3874 5.7693 34 1 3.7303 0.3469 4.3074 35 1 5.2724 -1.3047 1.5650 36 1 0.4143 -2.0976 3.5775 37 1 1.6927 -2.7412 4.6358 38 1 1.8115 -2.0291 7.0222 39 1 0.4430 -1.3132 8.9703 40 1 -1.7972 -0.3655 8.5842 41 1 -1.3812 -0.7827 4.4759 42 1 2.1266 -1.8045 -1.1644 43 1 3.3909 0.9971 -1.7894 44 1 3.8415 -0.6001 -2.5943 45 1 1.4567 -0.8565 -3.4197 46 1 1.0059 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364777971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:11 Heat of formation + Delta-G solvation = -29.391260 kcal Electronic energy + Delta-G solvation = -28827.888581 eV Core-core repulsion = 25037.883076 eV Total energy + Delta-G solvation = -3790.005504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00039 -39.17603 -37.99625 -37.50803 -36.78434 -34.76240 -34.32024 -33.13343 -32.29254 -29.41363 -28.33247 -26.87999 -24.61905 -24.40771 -24.08461 -23.14306 -22.70506 -20.91434 -19.67580 -18.48845 -18.44737 -17.81529 -17.49166 -17.16498 -16.84829 -16.58188 -16.40728 -16.04481 -15.59693 -15.26225 -14.92026 -14.60784 -14.51856 -14.32289 -14.20751 -13.85480 -13.79166 -13.59331 -13.27911 -13.06609 -12.95884 -12.88155 -12.78109 -12.59876 -12.54716 -12.44904 -12.25675 -12.14442 -12.06429 -11.88246 -11.47765 -11.33021 -10.94611 -10.85374 -10.65309 -10.43869 -10.34504 -9.87658 -9.48172 -8.22129 -6.20637 -0.43700 0.26336 0.44328 1.41266 1.49481 1.53668 1.99482 2.41272 2.84935 2.95946 3.01536 3.05936 3.47311 3.55809 3.66573 3.74756 3.90943 3.95411 4.04008 4.08741 4.15901 4.21723 4.25576 4.33309 4.38445 4.54285 4.59361 4.71933 4.76341 4.82518 4.85119 4.90227 4.99918 5.05498 5.08738 5.14749 5.22196 5.25850 5.29932 5.33192 5.37821 5.52044 5.72218 5.75494 5.88873 6.09506 6.27211 6.81543 7.10372 7.41104 8.80713 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.005374 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.518695 B = 5209.003401 C = 6977.269893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.046 4.046 3 H 0.062 0.938 4 C -0.617 4.617 5 S 2.602 3.398 6 O -0.985 6.985 7 O -1.005 7.005 8 N -0.975 5.975 9 C 0.238 3.762 10 C -0.551 4.551 11 H 0.065 0.935 12 C 0.057 3.943 13 N -0.882 5.882 14 Si 0.921 3.079 15 H -0.260 1.260 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.169 3.831 19 C -0.154 4.154 20 C -0.067 4.067 21 C -0.172 4.172 22 C 0.082 3.918 23 N -0.516 5.516 24 C 0.097 3.903 25 C -0.150 4.150 26 C -0.191 4.191 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.029 0.971 34 H 0.035 0.965 35 H 0.272 0.728 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.155 0.845 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 -3.656 -2.259 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.066 4.066 3 H 0.080 0.920 4 C -0.749 4.749 5 S 2.701 3.299 6 O -0.975 6.975 7 O -0.996 6.996 8 N -0.813 5.813 9 C 0.117 3.883 10 C -0.590 4.590 11 H 0.083 0.917 12 C -0.148 4.148 13 N -0.519 5.519 14 Si 0.746 3.254 15 H -0.184 1.184 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.043 3.957 19 C -0.158 4.158 20 C -0.094 4.094 21 C -0.192 4.192 22 C -0.075 4.075 23 N -0.225 5.225 24 C -0.060 4.060 25 C -0.169 4.169 26 C -0.228 4.228 27 C -0.197 4.197 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.160 0.840 39 H 0.183 0.817 40 H 0.200 0.800 41 H 0.172 0.828 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.110 -2.371 -2.474 9.733 hybrid contribution 1.938 -1.591 -0.418 2.542 sum -7.172 -3.962 -2.892 8.689 Atomic orbital electron populations 1.22367 0.92969 1.04262 1.04063 1.20421 0.96827 0.97636 0.91759 0.91970 1.30686 1.14947 1.13819 1.15442 1.04872 0.73069 0.75317 0.76650 1.93442 1.30644 1.86926 1.86483 1.93463 1.70346 1.49889 1.85883 1.58010 1.30554 1.46071 1.46628 1.18827 0.80991 0.96899 0.91610 1.21414 1.30461 1.12706 0.94436 0.91680 1.25510 0.93445 0.99382 0.96439 1.70133 1.39031 1.33080 1.09625 0.86207 0.79145 0.82841 0.77189 1.18418 1.21313 1.20187 1.19946 0.90828 0.90897 0.94042 1.21401 0.96068 1.01170 0.97132 1.21828 0.99927 0.95690 0.91921 1.22465 0.95614 1.00120 1.00972 1.23302 0.94467 0.95103 0.94596 1.67694 1.37422 1.17131 1.00218 1.22882 0.91522 0.93541 0.98011 1.22158 1.04951 0.99157 0.90680 1.23112 0.93428 1.02002 1.04257 1.23068 0.96998 1.03529 0.96077 0.89818 0.90636 0.91481 0.83312 0.84688 0.95294 0.94686 0.91853 0.89419 0.88617 0.83966 0.81715 0.80015 0.82781 0.87502 0.89469 0.88055 0.86969 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.96 8.72 71.98 0.63 -4.33 16 2 C -0.05 -1.45 2.54 -10.79 -0.03 -1.48 16 3 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 4 C -0.62 -22.56 5.60 71.98 0.40 -22.16 16 5 S 2.60 110.24 5.17 -56.49 -0.29 109.95 16 6 O -0.98 -40.41 13.35 -127.65 -1.70 -42.11 16 7 O -1.00 -51.65 16.30 -127.65 -2.08 -53.73 16 8 N -0.98 -40.68 2.77 -523.91 -1.45 -42.13 16 9 C 0.24 11.18 5.82 85.63 0.50 11.68 16 10 C -0.55 -26.14 8.37 25.60 0.21 -25.92 16 11 H 0.07 3.02 7.97 -2.91 -0.02 2.99 16 12 C 0.06 2.71 5.29 84.65 0.45 3.15 16 13 N -0.88 -43.88 10.85 21.45 0.23 -43.65 16 14 Si 0.92 37.05 29.63 68.60 2.03 39.08 16 15 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 18 C 0.17 5.93 5.40 85.63 0.46 6.39 16 19 C -0.15 -5.20 5.41 -19.77 -0.11 -5.31 16 20 C -0.07 -2.01 9.22 22.47 0.21 -1.80 16 21 C -0.17 -4.29 10.11 22.36 0.23 -4.07 16 22 C 0.08 2.18 11.18 84.69 0.95 3.13 16 23 N -0.52 -17.18 10.36 -195.84 -2.03 -19.21 16 24 C 0.10 3.39 10.53 84.67 0.89 4.28 16 25 C -0.15 -4.02 5.15 -10.79 -0.06 -4.07 16 26 C -0.19 -4.79 10.18 30.59 0.31 -4.47 16 27 C -0.16 -3.34 9.74 30.59 0.30 -3.04 16 28 H 0.08 1.89 7.29 -2.39 -0.02 1.87 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.12 5.27 -2.39 -0.01 2.11 16 31 H 0.15 6.19 5.39 -2.39 -0.01 6.18 16 32 H 0.13 4.30 8.14 -2.39 -0.02 4.28 16 33 H 0.03 1.28 7.47 -2.39 -0.02 1.26 16 34 H 0.03 1.90 6.42 -2.39 -0.02 1.89 16 35 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 36 H 0.09 2.69 7.59 -2.38 -0.02 2.67 16 37 H 0.10 3.26 7.43 -2.39 -0.02 3.25 16 38 H 0.14 4.08 8.05 -2.91 -0.02 4.05 16 39 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.15 5.43 7.24 -2.91 -0.02 5.40 16 42 H 0.11 2.80 8.11 -2.39 -0.02 2.78 16 43 H 0.09 2.31 8.05 -2.38 -0.02 2.29 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.10 1.96 7.61 -2.39 -0.02 1.95 16 Total: -1.00 -62.07 381.79 1.02 -61.05 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: 0.97 Total: 38.78 kcal Atomic # 6 Polarization: -53.38 SS G_CDS: 5.34 Total: -48.04 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.25 Total: -104.99 kcal Atomic # 8 Polarization: -92.05 SS G_CDS: -3.79 Total: -95.84 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Atomic # 16 Polarization: 110.24 SS G_CDS: -0.29 Total: 109.95 kcal Total: -62.07 1.02 -61.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364777971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.660 kcal (2) G-P(sol) polarization free energy of solvation -62.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds