Wall clock time and date at job start Tue Mar 31 2020 21:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47528 * 2 1 4 4 C 1.46897 * 110.99824 * 66.04567 * 3 2 1 5 5 C 1.46893 * 110.99806 * 190.00114 * 3 2 1 6 6 H 1.09000 * 110.89057 * 297.12788 * 5 3 2 7 7 C 1.55162 * 111.00122 * 173.25434 * 5 3 2 8 8 C 1.54330 * 102.94198 * 206.42516 * 7 5 3 9 9 N 1.47025 * 107.27127 * 22.18635 * 8 7 5 10 10 S 1.65600 * 125.64977 * 181.02163 * 9 8 7 11 11 O 1.42105 * 106.40003 * 342.40146 * 10 9 8 12 12 O 1.42097 * 106.40240 * 209.47924 * 10 9 8 13 13 C 1.76202 * 107.21499 * 95.93919 * 10 9 8 14 14 C 1.37636 * 120.12756 * 114.43269 * 13 10 9 15 15 C 1.38609 * 120.25051 * 180.02562 * 14 13 10 16 16 C 1.38652 * 120.50191 * 359.97369 * 15 14 13 17 17 C 1.37594 * 120.24702 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.13069 * 294.45207 * 13 10 9 19 19 C 1.41397 * 120.24177 * 359.95871 * 18 13 10 20 20 H 1.08006 * 120.00001 * 328.34333 * 19 18 13 21 21 C 1.39943 * 120.00283 * 148.34494 * 19 18 13 22 22 N 1.30825 * 119.99754 * 346.20763 * 21 19 18 23 23 Si 1.86798 * 120.00208 * 166.20523 * 21 19 18 24 24 H 1.48500 * 109.47138 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46915 * 120.00435 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99824 * 23 21 19 27 27 C 1.47429 * 108.69998 * 1.29342 * 9 8 7 28 28 H 1.08996 * 109.47847 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47098 * 300.00063 * 1 2 3 30 30 H 1.09005 * 109.47345 * 59.99811 * 1 2 3 31 31 H 1.09007 * 109.46769 * 240.00136 * 2 1 3 32 32 H 1.08997 * 109.46795 * 120.00346 * 2 1 3 33 33 H 1.09000 * 109.47340 * 178.05931 * 4 3 2 34 34 H 1.08998 * 109.47301 * 298.06522 * 4 3 2 35 35 H 1.09003 * 109.46898 * 58.05591 * 4 3 2 36 36 H 1.08994 * 110.72049 * 88.06319 * 7 5 3 37 37 H 1.08999 * 110.86780 * 324.85345 * 7 5 3 38 38 H 1.09004 * 109.87705 * 262.77816 * 8 7 5 39 39 H 1.08997 * 110.01342 * 141.68132 * 8 7 5 40 40 H 1.08006 * 119.87254 * 359.97438 * 14 13 10 41 41 H 1.07994 * 119.75079 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.88126 * 179.74974 * 16 15 14 43 43 H 1.08009 * 120.12884 * 179.97438 * 17 16 15 44 44 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.36521 * 94.48519 * 27 9 8 46 46 H 1.09005 * 110.36103 * 216.79825 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4685 1.4309 -0.2382 6 1 4.0102 0.9273 0.5625 7 6 3.9583 2.8936 -0.4064 8 6 5.2200 2.7372 -1.2812 9 7 5.1034 1.4544 -1.9901 10 16 6.2231 0.8234 -3.0343 11 8 7.0655 1.9014 -3.4186 12 8 5.5006 0.0311 -3.9666 13 6 7.2293 -0.2892 -2.1101 14 6 7.2067 -1.6366 -2.3904 15 6 7.9967 -2.5142 -1.6646 16 6 8.8182 -2.0471 -0.6499 17 6 8.8569 -0.7043 -0.3524 18 6 8.0587 0.1960 -1.0823 19 6 8.0906 1.5782 -0.7857 20 1 7.9346 2.3028 -1.5713 21 6 8.3244 2.0072 0.5256 22 7 8.2455 1.1563 1.5162 23 14 8.7492 3.7950 0.8618 24 1 8.7761 4.5465 -0.4187 25 1 7.7265 4.3859 1.7619 26 1 10.0832 3.8735 1.5094 27 6 3.8215 0.8259 -1.6222 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0744 3.0791 1.2411 34 1 0.5858 2.1097 1.3535 35 1 2.0914 1.5176 2.0954 36 1 4.2109 3.3293 0.5603 37 1 3.2081 3.4981 -0.9162 38 1 6.1096 2.7331 -0.6513 39 1 5.2789 3.5541 -2.0004 40 1 6.5702 -2.0115 -3.1784 41 1 7.9729 -3.5697 -1.8916 42 1 9.4265 -2.7403 -0.0881 43 1 9.4972 -0.3425 0.4387 44 1 8.4072 1.4537 2.4252 45 1 3.0533 1.0743 -2.3546 46 1 3.9376 -0.2552 -1.5448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364987549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:11 Heat of formation + Delta-G solvation = -48.119704 kcal Electronic energy + Delta-G solvation = -29122.178983 eV Core-core repulsion = 25331.361352 eV Total energy + Delta-G solvation = -3790.817631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.95209 -37.63142 -36.33307 -36.04364 -34.88708 -33.92374 -31.21753 -30.26075 -29.61957 -29.13824 -28.58624 -25.64059 -25.21490 -22.45071 -21.66250 -21.22279 -21.13720 -19.93719 -18.18588 -17.70612 -17.09700 -16.41333 -15.95194 -15.49759 -15.27898 -14.75428 -14.59633 -14.32853 -14.18315 -13.50489 -13.33706 -13.16434 -12.97150 -12.86234 -12.77348 -12.70201 -12.22859 -11.99113 -11.85438 -11.78269 -11.63974 -11.31650 -11.27332 -11.22192 -11.16139 -11.10169 -10.87903 -10.69783 -10.59746 -10.55944 -10.52095 -10.42800 -9.89278 -9.48155 -9.24090 -8.34383 -8.27412 -8.04081 -7.62430 -7.10733 -4.80633 1.45713 2.30269 2.66380 2.93335 3.02675 3.03377 3.72394 3.73868 4.08865 4.33877 4.64096 4.75691 4.95158 5.05803 5.19958 5.29330 5.35153 5.40352 5.48721 5.51659 5.53342 5.69569 5.75495 5.78036 5.92462 5.96318 6.00044 6.01644 6.09139 6.13116 6.18955 6.28181 6.30201 6.35800 6.54962 6.71509 6.77010 6.87668 6.98495 7.09030 7.10568 7.20342 7.30219 7.47312 7.64442 7.75946 7.90925 8.31758 8.47885 8.60916 9.84582 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.005706 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.055867 B = 4905.793641 C = 5908.326988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.532 5.532 4 C 0.023 3.977 5 C 0.070 3.930 6 H 0.063 0.937 7 C -0.117 4.117 8 C 0.115 3.885 9 N -1.002 6.002 10 S 2.720 3.280 11 O -0.969 6.969 12 O -0.993 6.993 13 C -0.774 4.774 14 C -0.004 4.004 15 C -0.247 4.247 16 C -0.076 4.076 17 C -0.156 4.156 18 C 0.196 3.804 19 C -0.478 4.478 20 H 0.116 0.884 21 C 0.083 3.917 22 N -0.778 5.778 23 Si 0.898 3.102 24 H -0.248 1.248 25 H -0.268 1.268 26 H -0.268 1.268 27 C 0.139 3.861 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.286 0.714 45 H 0.073 0.927 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 1.852 3.096 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.125 4.125 5 C -0.040 4.040 6 H 0.081 0.919 7 C -0.156 4.156 8 C -0.010 4.010 9 N -0.838 5.838 10 S 2.820 3.180 11 O -0.960 6.960 12 O -0.984 6.984 13 C -0.870 4.870 14 C -0.024 4.024 15 C -0.267 4.267 16 C -0.095 4.095 17 C -0.176 4.176 18 C 0.192 3.808 19 C -0.507 4.507 20 H 0.134 0.866 21 C -0.138 4.138 22 N -0.401 5.401 23 Si 0.721 3.279 24 H -0.171 1.171 25 H -0.193 1.193 26 H -0.193 1.193 27 C 0.013 3.987 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.040 2.295 1.997 10.491 hybrid contribution 0.952 -0.323 1.845 2.101 sum -9.088 1.971 3.842 10.061 Atomic orbital electron populations 1.21780 0.95000 1.01362 1.02251 1.22168 0.95908 0.89056 1.01310 1.62060 1.13189 1.15849 1.34641 1.22400 1.01196 0.99229 0.89705 1.22889 0.86836 0.97036 0.97195 0.91862 1.22647 0.97161 0.95807 1.00031 1.21946 0.99314 0.84612 0.95132 1.58445 1.31111 1.30193 1.64093 1.00530 0.72107 0.73126 0.72264 1.93472 1.66383 1.54792 1.81348 1.93444 1.73420 1.71428 1.60085 1.29964 1.23722 1.08552 1.24715 1.20264 0.94904 0.91718 0.95494 1.20499 1.05924 0.97600 1.02684 1.20899 0.97023 0.95669 0.95907 1.21407 1.01510 0.92386 1.02288 1.17003 0.84807 0.93017 0.86005 1.20480 1.41898 0.92995 0.95302 0.86604 1.25964 0.91670 1.00519 0.95681 1.69810 1.32446 1.36912 1.00930 0.86375 0.79438 0.81751 0.80346 1.17088 1.19266 1.19261 1.21788 0.85367 0.96652 0.94919 0.92474 0.92905 0.91868 0.90293 0.94815 0.91217 0.91383 0.95721 0.90895 0.90200 0.88981 0.91984 0.87416 0.88657 0.88804 0.86429 0.90325 0.90923 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.84 37.16 0.37 -1.02 16 2 C 0.04 0.51 5.55 -3.82 -0.02 0.48 16 3 N -0.53 -6.72 4.66 -232.17 -1.08 -7.80 16 4 C 0.02 0.25 9.15 60.06 0.55 0.80 16 5 C 0.07 1.04 2.72 -65.45 -0.18 0.87 16 6 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.12 -1.68 5.38 -24.89 -0.13 -1.82 16 8 C 0.12 2.04 6.46 -3.06 -0.02 2.02 16 9 N -1.00 -19.36 3.65 -111.28 -0.41 -19.77 16 10 S 2.72 61.24 5.30 -107.50 -0.57 60.67 16 11 O -0.97 -23.77 15.16 -57.17 -0.87 -24.64 16 12 O -0.99 -23.12 16.63 -57.17 -0.95 -24.08 16 13 C -0.77 -18.63 5.96 -38.87 -0.23 -18.86 16 14 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 15 C -0.25 -5.38 10.05 -39.29 -0.39 -5.78 16 16 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 17 C -0.16 -3.82 8.65 -38.88 -0.34 -4.15 16 18 C 0.20 4.94 5.49 -106.82 -0.59 4.35 16 19 C -0.48 -11.66 5.98 -37.74 -0.23 -11.88 16 20 H 0.12 2.88 4.99 -52.48 -0.26 2.62 16 21 C 0.08 1.87 4.72 -17.34 -0.08 1.79 16 22 N -0.78 -17.90 11.22 55.55 0.62 -17.27 16 23 Si 0.90 17.09 29.30 -169.99 -4.98 12.11 16 24 H -0.25 -4.80 7.11 56.52 0.40 -4.39 16 25 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 26 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 27 C 0.14 2.32 5.45 -2.41 -0.01 2.30 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.47 6.59 -51.93 -0.34 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.95 6.66 -51.93 -0.35 0.61 16 32 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.07 0.72 6.95 -51.93 -0.36 0.36 16 34 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 35 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 36 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.79 4.77 -51.93 -0.25 1.54 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.11 2.28 7.32 -52.48 -0.38 1.89 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.12 2.89 6.57 -52.48 -0.34 2.54 16 44 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.12 7.77 -51.93 -0.40 0.71 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -28.29 367.84 -11.58 -39.87 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.81 Total: 8.81 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -2.08 Total: -33.45 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.86 Total: -44.84 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -1.82 Total: -48.71 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -4.98 Total: 12.11 kcal Atomic # 16 Polarization: 61.24 SS G_CDS: -0.57 Total: 60.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.29 -11.58 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364987549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.247 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds