Wall clock time and date at job start Tue Mar 31 2020 21:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47528 * 2 1 4 4 C 1.46897 * 110.99824 * 66.04567 * 3 2 1 5 5 C 1.46893 * 110.99806 * 190.00114 * 3 2 1 6 6 H 1.09000 * 110.89057 * 297.12788 * 5 3 2 7 7 C 1.55162 * 111.00122 * 173.25434 * 5 3 2 8 8 C 1.54330 * 102.94198 * 206.42516 * 7 5 3 9 9 N 1.47025 * 107.27127 * 22.18635 * 8 7 5 10 10 S 1.65600 * 125.64977 * 181.02163 * 9 8 7 11 11 O 1.42105 * 106.40003 * 342.40146 * 10 9 8 12 12 O 1.42097 * 106.40240 * 209.47924 * 10 9 8 13 13 C 1.76202 * 107.21499 * 95.93919 * 10 9 8 14 14 C 1.37636 * 120.12756 * 114.43269 * 13 10 9 15 15 C 1.38609 * 120.25051 * 180.02562 * 14 13 10 16 16 C 1.38652 * 120.50191 * 359.97369 * 15 14 13 17 17 C 1.37594 * 120.24702 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.13069 * 294.45207 * 13 10 9 19 19 C 1.41397 * 120.24177 * 359.95871 * 18 13 10 20 20 H 1.08006 * 120.00001 * 328.34333 * 19 18 13 21 21 C 1.39943 * 120.00283 * 148.34494 * 19 18 13 22 22 N 1.30825 * 119.99754 * 346.20763 * 21 19 18 23 23 Si 1.86798 * 120.00208 * 166.20523 * 21 19 18 24 24 H 1.48500 * 109.47138 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46915 * 120.00435 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99824 * 23 21 19 27 27 C 1.47429 * 108.69998 * 1.29342 * 9 8 7 28 28 H 1.08996 * 109.47847 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47098 * 300.00063 * 1 2 3 30 30 H 1.09005 * 109.47345 * 59.99811 * 1 2 3 31 31 H 1.09007 * 109.46769 * 240.00136 * 2 1 3 32 32 H 1.08997 * 109.46795 * 120.00346 * 2 1 3 33 33 H 1.09000 * 109.47340 * 178.05931 * 4 3 2 34 34 H 1.08998 * 109.47301 * 298.06522 * 4 3 2 35 35 H 1.09003 * 109.46898 * 58.05591 * 4 3 2 36 36 H 1.08994 * 110.72049 * 88.06319 * 7 5 3 37 37 H 1.08999 * 110.86780 * 324.85345 * 7 5 3 38 38 H 1.09004 * 109.87705 * 262.77816 * 8 7 5 39 39 H 1.08997 * 110.01342 * 141.68132 * 8 7 5 40 40 H 1.08006 * 119.87254 * 359.97438 * 14 13 10 41 41 H 1.07994 * 119.75079 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.88126 * 179.74974 * 16 15 14 43 43 H 1.08009 * 120.12884 * 179.97438 * 17 16 15 44 44 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.36521 * 94.48519 * 27 9 8 46 46 H 1.09005 * 110.36103 * 216.79825 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4685 1.4309 -0.2382 6 1 4.0102 0.9273 0.5625 7 6 3.9583 2.8936 -0.4064 8 6 5.2200 2.7372 -1.2812 9 7 5.1034 1.4544 -1.9901 10 16 6.2231 0.8234 -3.0343 11 8 7.0655 1.9014 -3.4186 12 8 5.5006 0.0311 -3.9666 13 6 7.2293 -0.2892 -2.1101 14 6 7.2067 -1.6366 -2.3904 15 6 7.9967 -2.5142 -1.6646 16 6 8.8182 -2.0471 -0.6499 17 6 8.8569 -0.7043 -0.3524 18 6 8.0587 0.1960 -1.0823 19 6 8.0906 1.5782 -0.7857 20 1 7.9346 2.3028 -1.5713 21 6 8.3244 2.0072 0.5256 22 7 8.2455 1.1563 1.5162 23 14 8.7492 3.7950 0.8618 24 1 8.7761 4.5465 -0.4187 25 1 7.7265 4.3859 1.7619 26 1 10.0832 3.8735 1.5094 27 6 3.8215 0.8259 -1.6222 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0744 3.0791 1.2411 34 1 0.5858 2.1097 1.3535 35 1 2.0914 1.5176 2.0954 36 1 4.2109 3.3293 0.5603 37 1 3.2081 3.4981 -0.9162 38 1 6.1096 2.7331 -0.6513 39 1 5.2789 3.5541 -2.0004 40 1 6.5702 -2.0115 -3.1784 41 1 7.9729 -3.5697 -1.8916 42 1 9.4265 -2.7403 -0.0881 43 1 9.4972 -0.3425 0.4387 44 1 8.4072 1.4537 2.4252 45 1 3.0533 1.0743 -2.3546 46 1 3.9376 -0.2552 -1.5448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364987549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:10 Heat of formation + Delta-G solvation = -66.000698 kcal Electronic energy + Delta-G solvation = -29122.954361 eV Core-core repulsion = 25331.361352 eV Total energy + Delta-G solvation = -3791.593009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.15126 -39.40479 -38.15418 -37.23041 -36.74347 -35.67360 -32.30684 -32.01954 -31.40976 -30.34437 -29.75329 -27.36730 -26.25861 -23.78152 -23.34808 -22.96503 -22.33120 -21.07293 -19.85154 -19.46871 -18.75031 -17.91068 -17.43103 -17.17813 -16.60790 -16.12933 -16.08755 -15.64661 -15.33259 -15.22742 -14.97483 -14.49797 -14.45486 -14.22959 -14.17826 -13.90047 -13.76498 -13.37674 -13.14612 -13.07236 -13.01958 -12.96387 -12.92416 -12.85257 -12.66595 -12.44647 -12.27418 -12.16717 -12.13754 -11.79600 -11.71149 -11.63493 -11.56273 -11.16468 -11.02692 -9.92226 -9.73914 -9.44211 -9.33628 -8.82323 -6.62325 -0.27458 0.50403 0.93711 1.37084 1.44904 1.51773 2.15586 2.21086 2.59185 2.92132 2.98000 3.35475 3.46227 3.68260 3.89063 4.13223 4.16433 4.28386 4.33308 4.37385 4.45728 4.45991 4.61466 4.63294 4.67645 4.68059 4.74984 4.89346 4.90752 4.96448 4.97851 5.03846 5.08848 5.13467 5.16262 5.19799 5.25958 5.33362 5.42567 5.51081 5.58699 5.70045 5.83031 5.96184 6.10121 6.11657 6.13595 6.49414 6.69198 6.80120 8.15860 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.005706 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.055867 B = 4905.793641 C = 5908.326988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.038 3.962 3 N -0.531 5.531 4 C 0.022 3.978 5 C 0.079 3.921 6 H 0.041 0.959 7 C -0.105 4.105 8 C 0.105 3.895 9 N -1.003 6.003 10 S 2.734 3.266 11 O -0.995 6.995 12 O -1.005 7.005 13 C -0.795 4.795 14 C -0.018 4.018 15 C -0.248 4.248 16 C -0.075 4.075 17 C -0.182 4.182 18 C 0.170 3.830 19 C -0.496 4.496 20 H 0.105 0.895 21 C 0.057 3.943 22 N -0.798 5.798 23 Si 0.952 3.048 24 H -0.257 1.257 25 H -0.246 1.246 26 H -0.262 1.262 27 C 0.134 3.866 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.019 0.981 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.108 0.892 44 H 0.296 0.704 45 H 0.085 0.915 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 2.381 4.149 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 N -0.256 5.256 4 C -0.126 4.126 5 C -0.031 4.031 6 H 0.059 0.941 7 C -0.144 4.144 8 C -0.020 4.020 9 N -0.841 5.841 10 S 2.833 3.167 11 O -0.986 6.986 12 O -0.996 6.996 13 C -0.889 4.889 14 C -0.038 4.038 15 C -0.268 4.268 16 C -0.094 4.094 17 C -0.202 4.202 18 C 0.166 3.834 19 C -0.524 4.524 20 H 0.122 0.878 21 C -0.163 4.163 22 N -0.422 5.422 23 Si 0.772 3.228 24 H -0.180 1.180 25 H -0.170 1.170 26 H -0.187 1.187 27 C 0.008 3.992 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.521 2.796 3.059 12.244 hybrid contribution 1.381 -0.571 1.523 2.133 sum -10.140 2.226 4.581 11.348 Atomic orbital electron populations 1.21725 0.92964 1.02295 1.02636 1.22256 0.97556 0.88479 1.00649 1.62116 1.11137 1.16502 1.35811 1.22490 1.02457 0.99173 0.88496 1.22686 0.88305 0.96910 0.95201 0.94145 1.22621 0.95864 0.95719 1.00204 1.22112 1.00371 0.83977 0.95504 1.58200 1.31208 1.30881 1.63845 0.99925 0.71950 0.72495 0.72325 1.93427 1.67508 1.55514 1.82156 1.93413 1.73520 1.71751 1.60914 1.30244 1.24372 1.09535 1.24798 1.20579 0.95443 0.91673 0.96110 1.20888 1.04873 0.99150 1.01908 1.21245 0.96915 0.95361 0.95869 1.21457 1.02291 0.93550 1.02930 1.17308 0.85499 0.93791 0.86814 1.20490 1.43263 0.92631 0.95970 0.87775 1.26566 0.90918 1.03971 0.94838 1.69820 1.32181 1.38591 1.01568 0.85582 0.79901 0.77263 0.80076 1.18022 1.16970 1.18682 1.21987 0.84366 0.96377 0.96478 0.91357 0.91968 0.91930 0.91180 0.95378 0.90525 0.89452 0.96232 0.89483 0.88144 0.90941 0.91176 0.86189 0.85406 0.85853 0.87356 0.89319 0.89682 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.84 71.98 0.71 -1.60 16 2 C 0.04 0.84 5.55 86.30 0.48 1.32 16 3 N -0.53 -12.45 4.66 -888.45 -4.14 -16.59 16 4 C 0.02 0.41 9.15 127.69 1.17 1.58 16 5 C 0.08 2.29 2.72 46.39 0.13 2.42 16 6 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.11 -2.84 5.38 31.79 0.17 -2.67 16 8 C 0.11 3.70 6.46 86.73 0.56 4.26 16 9 N -1.00 -39.10 3.65 -505.99 -1.85 -40.95 16 10 S 2.73 125.79 5.30 -56.49 -0.30 125.49 16 11 O -1.00 -50.26 15.16 -128.00 -1.94 -52.20 16 12 O -1.01 -47.36 16.63 -128.00 -2.13 -49.49 16 13 C -0.80 -39.12 5.96 22.73 0.14 -38.98 16 14 C -0.02 -0.84 9.53 22.22 0.21 -0.63 16 15 C -0.25 -10.57 10.05 22.46 0.23 -10.34 16 16 C -0.08 -3.31 10.02 22.22 0.22 -3.09 16 17 C -0.18 -9.07 8.65 22.73 0.20 -8.88 16 18 C 0.17 8.80 5.49 -21.29 -0.12 8.68 16 19 C -0.50 -24.79 5.98 23.46 0.14 -24.65 16 20 H 0.10 5.36 4.99 -2.91 -0.01 5.35 16 21 C 0.06 2.58 4.72 85.26 0.40 2.98 16 22 N -0.80 -36.96 11.22 21.83 0.24 -36.71 16 23 Si 0.95 34.65 29.30 68.60 2.01 36.66 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 26 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 27 C 0.13 4.42 5.45 86.93 0.47 4.90 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.92 6.59 -2.39 -0.02 0.90 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.65 6.66 -2.38 -0.02 1.63 16 32 H 0.03 0.65 8.11 -2.39 -0.02 0.63 16 33 H 0.08 1.37 6.95 -2.39 -0.02 1.35 16 34 H 0.09 1.36 6.56 -2.39 -0.02 1.34 16 35 H 0.02 0.39 8.13 -2.39 -0.02 0.38 16 36 H 0.09 2.12 7.97 -2.39 -0.02 2.10 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.85 4.77 -2.39 -0.01 2.84 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.12 5.06 7.32 -2.91 -0.02 5.04 16 41 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 43 H 0.11 5.46 6.57 -2.91 -0.02 5.44 16 44 H 0.30 12.21 8.30 -92.71 -0.77 11.44 16 45 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.06 2.05 7.77 -2.38 -0.02 2.03 16 Total: -1.00 -61.26 367.84 -2.01 -63.27 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.98 Total: 35.20 kcal Atomic # 6 Polarization: -69.79 SS G_CDS: 5.10 Total: -64.69 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -5.74 Total: -94.25 kcal Atomic # 8 Polarization: -97.62 SS G_CDS: -4.07 Total: -101.69 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.01 Total: 36.66 kcal Atomic # 16 Polarization: 125.79 SS G_CDS: -0.30 Total: 125.49 kcal Total: -61.26 -2.01 -63.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364987549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.727 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds