Wall clock time and date at job start Tue Mar 31 2020 21:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.47053 * 2 1 4 4 C 1.46899 * 110.99966 * 66.04648 * 3 2 1 5 5 C 1.46896 * 111.00085 * 189.99626 * 3 2 1 6 6 H 1.09003 * 110.78223 * 303.24334 * 5 3 2 7 7 C 1.55407 * 110.85158 * 66.53803 * 5 3 2 8 8 C 1.54910 * 101.66466 * 153.69926 * 7 5 3 9 9 N 1.47428 * 104.83480 * 323.07595 * 8 7 5 10 10 S 1.65594 * 125.64828 * 204.16699 * 9 8 7 11 11 O 1.42096 * 106.40456 * 23.49635 * 10 9 8 12 12 O 1.42104 * 106.40139 * 156.41789 * 10 9 8 13 13 C 1.76205 * 107.21524 * 269.95504 * 10 9 8 14 14 C 1.38650 * 119.87534 * 269.72612 * 13 10 9 15 15 C 1.38617 * 120.49844 * 179.72295 * 14 13 10 16 16 C 1.37640 * 120.24916 * 0.55226 * 15 14 13 17 17 C 1.40698 * 119.74287 * 359.72928 * 16 15 14 18 18 C 1.41392 * 120.24208 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00032 * 155.20356 * 18 17 16 20 20 C 1.39948 * 120.00555 * 335.20317 * 18 17 16 21 21 N 1.30829 * 119.99434 * 342.29708 * 20 18 17 22 22 Si 1.86790 * 120.00546 * 162.29378 * 20 18 17 23 23 H 1.48506 * 109.47194 * 89.99940 * 22 20 18 24 24 H 1.48498 * 109.47471 * 210.00304 * 22 20 18 25 25 H 1.48507 * 109.47029 * 330.00313 * 22 20 18 26 26 C 1.37603 * 119.87570 * 90.00567 * 13 10 9 27 27 C 1.47023 * 108.69785 * 24.12741 * 9 8 7 28 28 H 1.08999 * 109.47381 * 299.99878 * 1 2 3 29 29 H 1.09000 * 109.47222 * 60.00357 * 1 2 3 30 30 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47381 * 240.00122 * 2 1 3 32 32 H 1.09000 * 109.47222 * 119.99643 * 2 1 3 33 33 H 1.08998 * 109.47015 * 183.95809 * 4 3 2 34 34 H 1.09007 * 109.47138 * 303.95181 * 4 3 2 35 35 H 1.08996 * 109.47701 * 63.95434 * 4 3 2 36 36 H 1.08999 * 110.89170 * 35.63115 * 7 5 3 37 37 H 1.09002 * 111.06937 * 271.84717 * 7 5 3 38 38 H 1.09001 * 110.36715 * 204.23637 * 8 7 5 39 39 H 1.09001 * 110.45904 * 81.96646 * 8 7 5 40 40 H 1.08002 * 119.75191 * 0.02562 * 14 13 10 41 41 H 1.07999 * 119.87804 * 180.25906 * 15 14 13 42 42 H 1.08001 * 120.12777 * 179.69933 * 16 15 14 43 43 H 0.96998 * 119.99857 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.12608 * 359.97388 * 26 13 10 45 45 H 1.09004 * 109.87981 * 118.35912 * 27 9 8 46 46 H 1.09003 * 109.87903 * 239.36665 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0670 1.2533 5 6 3.4685 1.4312 -0.2380 6 1 4.0015 0.8366 0.5039 7 6 3.8085 0.9487 -1.6757 8 6 5.1420 1.6888 -1.9472 9 7 4.9809 3.0053 -1.3035 10 16 5.7961 4.3868 -1.7146 11 8 6.2113 4.2215 -3.0634 12 8 4.9913 5.4730 -1.2767 13 6 7.2658 4.4335 -0.7437 14 6 7.2565 5.0588 0.4938 15 6 8.4038 5.0982 1.2707 16 6 9.5696 4.5253 0.8154 17 6 9.5922 3.8932 -0.4414 18 6 10.7838 3.3008 -0.9192 19 1 10.7366 2.5010 -1.6435 20 6 12.0246 3.7508 -0.4537 21 7 12.1187 4.9145 0.1367 22 14 13.5460 2.6901 -0.6754 23 1 14.1929 3.0171 -1.9716 24 1 14.4984 2.9527 0.4333 25 1 13.1563 1.2572 -0.6643 26 6 8.4200 3.8543 -1.2190 27 6 3.9758 2.8886 -0.2368 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9823 3.1099 1.1987 34 1 0.5918 2.0179 1.4052 35 1 2.1769 1.5792 2.0860 36 1 3.0386 1.2590 -2.3821 37 1 3.9487 -0.1319 -1.7034 38 1 5.2985 1.8074 -3.0194 39 1 5.9760 1.1476 -1.5005 40 1 6.3472 5.5144 0.8572 41 1 8.3841 5.5843 2.2349 42 1 10.4635 4.5614 1.4203 43 1 12.9787 5.2266 0.4590 44 1 8.4260 3.3714 -2.1850 45 1 4.4289 3.1225 0.7266 46 1 3.1475 3.5697 -0.4319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365009561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:13 Heat of formation + Delta-G solvation = -66.796300 kcal Electronic energy + Delta-G solvation = -27604.337103 eV Core-core repulsion = 23812.709594 eV Total energy + Delta-G solvation = -3791.627509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21740 -39.47221 -38.33592 -37.27534 -36.96310 -35.68823 -32.07062 -31.94579 -31.61840 -31.22297 -28.90647 -27.36581 -26.84277 -23.73915 -23.10375 -22.87181 -22.71116 -21.05585 -20.31200 -19.57449 -18.62431 -17.88016 -17.58450 -16.92582 -16.71239 -16.50183 -15.96335 -15.84180 -15.38135 -15.34105 -15.07818 -14.82106 -14.39196 -14.33971 -14.06293 -13.73572 -13.70508 -13.31355 -13.26407 -13.19769 -13.09341 -13.08090 -12.90855 -12.87913 -12.72236 -12.60827 -12.46422 -12.22237 -12.20863 -11.83127 -11.76841 -11.59185 -11.55055 -11.40446 -11.15145 -10.02687 -9.85943 -9.58852 -9.28042 -8.74820 -6.47174 -0.62323 0.37477 0.81633 1.36783 1.43986 1.52217 2.02749 2.17033 2.53946 2.74552 2.90510 3.20226 3.47655 3.55414 3.73205 4.15124 4.18326 4.26639 4.32620 4.37771 4.40366 4.46849 4.55624 4.61276 4.65390 4.71111 4.80438 4.83216 4.86429 4.86642 4.92560 4.98633 5.03454 5.06739 5.13371 5.17344 5.20111 5.25191 5.37159 5.43181 5.49056 5.54562 5.85382 5.91048 6.07381 6.12313 6.16698 6.49882 6.77628 6.82063 8.23583 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.002960 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.997011 B = 9457.005239 C = 9825.905596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.542 5.542 4 C 0.013 3.987 5 C 0.079 3.921 6 H 0.066 0.934 7 C -0.107 4.107 8 C 0.105 3.895 9 N -1.008 6.008 10 S 2.730 3.270 11 O -0.988 6.988 12 O -0.984 6.984 13 C -0.639 4.639 14 C -0.150 4.150 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.063 3.937 18 C -0.496 4.496 19 H 0.082 0.918 20 C 0.035 3.965 21 N -0.825 5.825 22 Si 0.986 3.014 23 H -0.263 1.263 24 H -0.264 1.264 25 H -0.255 1.255 26 C -0.144 4.144 27 C 0.121 3.879 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.292 0.708 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.450 -11.272 2.746 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.267 5.267 4 C -0.135 4.135 5 C -0.031 4.031 6 H 0.083 0.917 7 C -0.146 4.146 8 C -0.020 4.020 9 N -0.848 5.848 10 S 2.825 3.175 11 O -0.979 6.979 12 O -0.975 6.975 13 C -0.728 4.728 14 C -0.171 4.171 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.060 3.940 18 C -0.525 4.525 19 H 0.100 0.900 20 C -0.181 4.181 21 N -0.450 5.450 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.189 1.189 25 H -0.179 1.179 26 C -0.165 4.165 27 C -0.004 4.004 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.754 -10.149 1.819 19.673 hybrid contribution 1.986 -0.423 1.151 2.334 sum -14.769 -10.572 2.971 18.404 Atomic orbital electron populations 1.21775 0.94056 1.02230 1.02216 1.22177 0.96677 0.87695 1.01416 1.62101 1.11736 1.17303 1.35605 1.22546 1.02356 0.99245 0.89336 1.22650 0.88368 0.94020 0.98038 0.91661 1.22846 0.95290 1.00955 0.95496 1.22307 0.99623 0.81595 0.98427 1.58338 1.53422 1.25055 1.47971 1.00426 0.72614 0.71721 0.72692 1.93484 1.83552 1.86181 1.34639 1.93475 1.68648 1.52004 1.83333 1.30324 1.17898 1.13206 1.11374 1.20435 0.99020 1.03482 0.94170 1.21140 0.93076 1.00105 0.99783 1.21651 0.97316 1.01138 0.95974 1.18050 0.93038 0.91379 0.91551 1.19868 0.90904 1.18041 1.23678 0.89972 1.26820 1.03903 0.95269 0.92080 1.69828 1.28826 1.17084 1.29299 0.85143 0.75885 0.79246 0.79124 1.18811 1.18859 1.17898 1.20822 0.93320 1.03758 0.98636 1.21872 0.90439 0.98697 0.89385 0.92593 0.92493 0.91093 0.89858 0.94577 0.91533 0.89824 0.95132 0.89446 0.87458 0.89848 0.90786 0.85382 0.85505 0.86805 0.89710 0.87138 0.91529 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.84 71.98 0.71 -0.91 16 2 C 0.05 0.63 5.58 86.30 0.48 1.11 16 3 N -0.54 -9.29 4.60 -889.56 -4.09 -13.38 16 4 C 0.01 0.20 9.05 127.69 1.16 1.36 16 5 C 0.08 1.53 2.65 46.19 0.12 1.65 16 6 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 7 C -0.11 -1.90 5.68 32.07 0.18 -1.71 16 8 C 0.11 2.58 7.11 86.85 0.62 3.20 16 9 N -1.01 -30.37 3.70 -506.42 -1.87 -32.25 16 10 S 2.73 106.63 5.93 -56.49 -0.34 106.30 16 11 O -0.99 -43.08 16.59 -128.00 -2.12 -45.20 16 12 O -0.98 -41.07 16.84 -128.00 -2.16 -43.23 16 13 C -0.64 -28.71 5.97 22.22 0.13 -28.58 16 14 C -0.15 -6.58 9.53 22.46 0.21 -6.36 16 15 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 16 C -0.14 -7.24 8.70 22.73 0.20 -7.04 16 17 C 0.06 3.38 5.57 -21.29 -0.12 3.26 16 18 C -0.50 -26.24 9.05 23.46 0.21 -26.02 16 19 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 20 C 0.03 1.70 5.14 85.26 0.44 2.14 16 21 N -0.82 -42.10 10.97 21.83 0.24 -41.86 16 22 Si 0.99 36.97 29.59 68.60 2.03 39.00 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 26 C -0.14 -7.20 9.26 22.73 0.21 -6.98 16 27 C 0.12 3.06 5.51 86.73 0.48 3.53 16 28 H 0.06 0.61 6.47 -2.39 -0.02 0.60 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.99 6.95 -2.39 -0.02 0.97 16 32 H 0.04 0.46 8.12 -2.39 -0.02 0.44 16 33 H 0.07 1.14 6.63 -2.39 -0.02 1.12 16 34 H 0.08 1.10 6.30 -2.38 -0.02 1.08 16 35 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.11 1.34 7.91 -2.39 -0.02 1.32 16 38 H 0.08 2.08 7.78 -2.39 -0.02 2.06 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.13 4.95 7.59 -2.91 -0.02 4.92 16 41 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.11 5.97 6.18 -2.91 -0.02 5.96 16 43 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 44 H 0.11 5.34 7.60 -2.91 -0.02 5.32 16 45 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 46 H 0.08 2.00 7.29 -2.39 -0.02 1.99 16 Total: -1.00 -66.19 378.30 -2.08 -68.27 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.97 Total: 29.01 kcal Atomic # 6 Polarization: -71.92 SS G_CDS: 5.26 Total: -66.66 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -5.72 Total: -87.49 kcal Atomic # 8 Polarization: -84.15 SS G_CDS: -4.28 Total: -88.43 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 106.63 SS G_CDS: -0.34 Total: 106.30 kcal Total: -66.19 -2.08 -68.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365009561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.474 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds