Wall clock time and date at job start Tue Mar 31 2020 21:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47205 * 2 1 4 4 C 1.46897 * 111.00357 * 66.04310 * 3 2 1 5 5 C 1.46899 * 110.99713 * 190.00008 * 3 2 1 6 6 H 1.09000 * 110.91824 * 298.15989 * 5 3 2 7 7 C 1.55451 * 111.11390 * 174.16996 * 5 3 2 8 8 C 1.54329 * 102.96759 * 206.46637 * 7 5 3 9 9 N 1.47021 * 107.27041 * 22.18620 * 8 7 5 10 10 S 1.65600 * 125.64728 * 181.07838 * 9 8 7 11 11 O 1.42104 * 106.39857 * 23.52354 * 10 9 8 12 12 O 1.42101 * 106.40202 * 156.44256 * 10 9 8 13 13 C 1.76197 * 107.22283 * 269.98437 * 10 9 8 14 14 C 1.38655 * 119.87700 * 89.99747 * 13 10 9 15 15 C 1.38618 * 120.50099 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24591 * 359.97438 * 15 14 13 17 17 C 1.40697 * 119.74662 * 0.02562 * 16 15 14 18 18 C 1.41395 * 120.24324 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00170 * 155.23707 * 18 17 16 20 20 C 1.39943 * 120.00203 * 335.24801 * 18 17 16 21 21 N 1.30828 * 120.00033 * 342.31888 * 20 18 17 22 22 Si 1.86807 * 120.00249 * 162.32363 * 20 18 17 23 23 H 1.48498 * 109.47123 * 89.99725 * 22 20 18 24 24 H 1.48507 * 109.46712 * 209.99796 * 22 20 18 25 25 H 1.48500 * 109.46806 * 329.99413 * 22 20 18 26 26 C 1.37603 * 119.87377 * 269.72815 * 13 10 9 27 27 C 1.47424 * 108.70429 * 1.06824 * 9 8 7 28 28 H 1.09004 * 109.47267 * 60.00134 * 1 2 3 29 29 H 1.09002 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47260 * 300.00092 * 1 2 3 31 31 H 1.08995 * 109.46935 * 239.99628 * 2 1 3 32 32 H 1.08997 * 109.46601 * 119.99848 * 2 1 3 33 33 H 1.08995 * 109.47526 * 178.29243 * 4 3 2 34 34 H 1.09002 * 109.47393 * 298.29592 * 4 3 2 35 35 H 1.09006 * 109.46781 * 58.28819 * 4 3 2 36 36 H 1.08997 * 110.71040 * 88.09311 * 7 5 3 37 37 H 1.09001 * 110.85899 * 324.90439 * 7 5 3 38 38 H 1.09000 * 109.87638 * 262.77913 * 8 7 5 39 39 H 1.08994 * 109.88358 * 141.60878 * 8 7 5 40 40 H 1.08001 * 119.75045 * 359.97438 * 14 13 10 41 41 H 1.08001 * 119.87437 * 180.02562 * 15 14 13 42 42 H 1.08007 * 120.12287 * 180.02562 * 16 15 14 43 43 H 0.96995 * 120.00368 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.12532 * 359.97438 * 26 13 10 45 45 H 1.08992 * 110.36694 * 94.70459 * 27 9 8 46 46 H 1.09001 * 110.36354 * 216.91994 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4685 1.4310 -0.2382 6 1 4.0096 0.9118 0.5529 7 6 3.9657 2.8966 -0.3842 8 6 5.2258 2.7489 -1.2628 9 7 5.1031 1.4780 -1.9918 10 16 6.2198 0.8585 -3.0461 11 8 7.4675 1.4432 -2.6984 12 8 6.0024 -0.5453 -3.0818 13 6 5.8158 1.4654 -4.6501 14 6 6.3621 2.6599 -5.0945 15 6 6.0535 3.1491 -6.3542 16 6 5.2000 2.4520 -7.1787 17 6 4.6397 1.2388 -6.7384 18 6 3.7620 0.5138 -7.5770 19 1 3.6473 -0.5521 -7.4460 20 6 3.0420 1.1773 -8.5769 21 7 2.9012 2.4771 -8.5286 22 14 2.2818 0.2071 -9.9806 23 1 0.9045 -0.2050 -9.6086 24 1 2.2329 1.0550 -11.1988 25 1 3.1039 -0.9999 -10.2502 26 6 4.9636 0.7495 -5.4593 27 6 3.8215 0.8465 -1.6286 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.0707 3.0806 1.2392 34 1 0.5857 2.1062 1.3554 35 1 2.0948 1.5200 2.0951 36 1 4.2210 3.3158 0.5889 37 1 3.2175 3.5123 -0.8836 38 1 6.1160 2.7310 -0.6340 39 1 5.2847 3.5771 -1.9688 40 1 7.0332 3.2132 -4.4543 41 1 6.4852 4.0803 -6.6903 42 1 4.9612 2.8348 -8.1601 43 1 2.4019 2.9369 -9.2214 44 1 4.5430 -0.1829 -5.1130 45 1 3.0517 1.1052 -2.3555 46 1 3.9359 -0.2358 -1.5671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365009562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:16 Heat of formation + Delta-G solvation = -47.914178 kcal Electronic energy + Delta-G solvation = -27802.560252 eV Core-core repulsion = 24011.751533 eV Total energy + Delta-G solvation = -3790.808718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.25301 -37.61892 -36.68986 -36.36110 -35.31157 -33.83228 -31.44374 -30.06502 -29.77821 -29.45219 -28.90134 -25.55680 -25.45044 -22.73750 -21.85207 -21.46269 -20.97052 -20.23967 -18.72162 -17.99649 -17.15403 -16.64312 -15.92030 -15.54249 -15.27047 -14.97013 -14.88527 -14.60250 -14.44401 -13.68180 -13.48599 -13.39182 -13.27495 -13.14615 -13.00791 -12.57172 -12.41266 -12.07431 -11.96079 -11.89196 -11.68197 -11.60055 -11.40011 -11.37286 -11.34455 -11.22881 -10.99593 -10.98210 -10.90380 -10.87231 -10.73780 -10.61071 -9.77205 -9.60439 -9.33529 -8.73936 -8.51309 -8.01875 -7.68801 -6.91591 -4.52212 0.94413 2.21043 2.64778 3.00719 3.02719 3.09624 3.42207 3.77186 3.83841 4.27562 4.31108 4.44991 4.61758 4.86789 4.96361 5.02284 5.04911 5.24212 5.27229 5.33453 5.37269 5.41286 5.47784 5.57763 5.65052 5.75241 5.76618 5.84864 5.87848 5.99735 6.04414 6.06910 6.15759 6.18923 6.28046 6.52011 6.66478 6.77620 6.88575 6.91302 6.95277 7.05576 7.23255 7.39810 7.73924 7.81950 7.95492 8.41356 8.68158 8.73120 10.03992 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003871 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.336626 B = 7230.996214 C = 8817.088012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 N -0.531 5.531 4 C 0.023 3.977 5 C 0.071 3.929 6 H 0.057 0.943 7 C -0.119 4.119 8 C 0.124 3.876 9 N -1.012 6.012 10 S 2.704 3.296 11 O -0.970 6.970 12 O -0.968 6.968 13 C -0.631 4.631 14 C -0.148 4.148 15 C -0.121 4.121 16 C -0.118 4.118 17 C 0.092 3.908 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.124 4.124 27 C 0.126 3.874 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 1.019 14.706 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.125 4.125 5 C -0.039 4.039 6 H 0.075 0.925 7 C -0.158 4.158 8 C -0.002 4.002 9 N -0.850 5.850 10 S 2.802 3.198 11 O -0.961 6.961 12 O -0.959 6.959 13 C -0.723 4.723 14 C -0.169 4.169 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.146 4.146 27 C 0.000 4.000 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.100 0.900 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.403 0.860 14.403 14.825 hybrid contribution -0.468 -0.250 -0.597 0.799 sum -3.871 0.610 13.806 14.352 Atomic orbital electron populations 1.21790 0.94707 1.01607 1.02481 1.22185 0.96303 0.88616 1.01233 1.61997 1.12498 1.16237 1.34892 1.22416 1.01662 0.99086 0.89344 1.22846 0.87556 0.96829 0.96623 0.92503 1.22731 0.97118 0.96088 0.99837 1.21638 0.98172 0.85655 0.94765 1.58610 1.34258 1.32488 1.59597 1.01264 0.72066 0.73004 0.73455 1.93502 1.39593 1.79127 1.83887 1.93514 1.85688 1.29294 1.87366 1.29795 1.13490 1.07945 1.21112 1.20065 1.03237 0.95570 0.98014 1.20807 0.99418 0.98972 0.94815 1.21629 0.95888 0.96750 0.99517 1.17672 0.90884 0.92096 0.90449 1.19606 1.20735 0.96144 1.12496 0.89936 1.25926 0.94963 0.94960 0.98378 1.69780 1.31337 1.09293 1.31510 0.86270 0.79814 0.80602 0.79886 1.19314 1.19996 1.18294 1.20764 0.99729 0.99502 0.94557 1.21955 0.85248 0.97264 0.95503 0.91552 0.92293 0.92891 0.90097 0.94905 0.91155 0.91081 0.95820 0.90581 0.89333 0.91289 0.91108 0.87683 0.88384 0.85772 0.90593 0.87124 0.90034 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.84 37.16 0.37 -0.92 16 2 C 0.04 0.44 5.56 -3.83 -0.02 0.42 16 3 N -0.53 -5.61 4.66 -232.12 -1.08 -6.69 16 4 C 0.02 0.19 9.15 60.06 0.55 0.74 16 5 C 0.07 0.81 2.72 -65.41 -0.18 0.64 16 6 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 7 C -0.12 -1.25 5.36 -24.73 -0.13 -1.38 16 8 C 0.12 1.61 6.99 -3.06 -0.02 1.59 16 9 N -1.01 -16.06 3.70 -111.43 -0.41 -16.47 16 10 S 2.70 52.91 5.93 -107.50 -0.64 52.27 16 11 O -0.97 -20.24 16.85 -57.17 -0.96 -21.21 16 12 O -0.97 -20.77 16.58 -57.17 -0.95 -21.72 16 13 C -0.63 -14.13 5.97 -39.66 -0.24 -14.37 16 14 C -0.15 -3.27 9.53 -39.29 -0.37 -3.65 16 15 C -0.12 -2.75 10.02 -39.66 -0.40 -3.15 16 16 C -0.12 -2.97 8.70 -38.87 -0.34 -3.31 16 17 C 0.09 2.41 5.57 -106.83 -0.60 1.82 16 18 C -0.46 -11.88 9.05 -37.74 -0.34 -12.22 16 19 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.75 16 21 N -0.79 -19.68 10.97 55.55 0.61 -19.07 16 22 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 26 C -0.12 -3.03 9.26 -38.87 -0.36 -3.39 16 27 C 0.13 1.79 5.54 -2.53 -0.01 1.78 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.41 6.59 -51.93 -0.34 0.07 16 31 H 0.08 0.86 6.70 -51.93 -0.35 0.51 16 32 H 0.03 0.30 8.11 -51.93 -0.42 -0.12 16 33 H 0.07 0.54 6.94 -51.93 -0.36 0.18 16 34 H 0.07 0.54 6.55 -51.93 -0.34 0.20 16 35 H 0.02 0.19 8.13 -51.93 -0.42 -0.24 16 36 H 0.08 0.63 7.98 -51.93 -0.41 0.21 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 41 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.12 3.16 6.18 -52.48 -0.32 2.84 16 43 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 44 H 0.11 2.59 7.60 -52.49 -0.40 2.19 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.11 7.41 -51.93 -0.39 0.72 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -30.12 379.03 -12.02 -42.15 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.09 Total: 5.64 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -2.18 Total: -33.66 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.89 Total: -42.23 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.91 Total: -42.92 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 52.91 SS G_CDS: -0.64 Total: 52.27 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.12 -12.02 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365009562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.768 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds