Wall clock time and date at job start Tue Mar 31 2020 21:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46897 * 109.47205 * 2 1 4 4 C 1.46897 * 111.00357 * 66.04310 * 3 2 1 5 5 C 1.46899 * 110.99713 * 190.00008 * 3 2 1 6 6 H 1.09000 * 110.91824 * 298.15989 * 5 3 2 7 7 C 1.55451 * 111.11390 * 174.16996 * 5 3 2 8 8 C 1.54329 * 102.96759 * 206.46637 * 7 5 3 9 9 N 1.47021 * 107.27041 * 22.18620 * 8 7 5 10 10 S 1.65600 * 125.64728 * 181.07838 * 9 8 7 11 11 O 1.42104 * 106.39857 * 23.52354 * 10 9 8 12 12 O 1.42101 * 106.40202 * 156.44256 * 10 9 8 13 13 C 1.76197 * 107.22283 * 269.98437 * 10 9 8 14 14 C 1.38655 * 119.87700 * 89.99747 * 13 10 9 15 15 C 1.38618 * 120.50099 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24591 * 359.97438 * 15 14 13 17 17 C 1.40697 * 119.74662 * 0.02562 * 16 15 14 18 18 C 1.41395 * 120.24324 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00170 * 155.23707 * 18 17 16 20 20 C 1.39943 * 120.00203 * 335.24801 * 18 17 16 21 21 N 1.30828 * 120.00033 * 342.31888 * 20 18 17 22 22 Si 1.86807 * 120.00249 * 162.32363 * 20 18 17 23 23 H 1.48498 * 109.47123 * 89.99725 * 22 20 18 24 24 H 1.48507 * 109.46712 * 209.99796 * 22 20 18 25 25 H 1.48500 * 109.46806 * 329.99413 * 22 20 18 26 26 C 1.37603 * 119.87377 * 269.72815 * 13 10 9 27 27 C 1.47424 * 108.70429 * 1.06824 * 9 8 7 28 28 H 1.09004 * 109.47267 * 60.00134 * 1 2 3 29 29 H 1.09002 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47260 * 300.00092 * 1 2 3 31 31 H 1.08995 * 109.46935 * 239.99628 * 2 1 3 32 32 H 1.08997 * 109.46601 * 119.99848 * 2 1 3 33 33 H 1.08995 * 109.47526 * 178.29243 * 4 3 2 34 34 H 1.09002 * 109.47393 * 298.29592 * 4 3 2 35 35 H 1.09006 * 109.46781 * 58.28819 * 4 3 2 36 36 H 1.08997 * 110.71040 * 88.09311 * 7 5 3 37 37 H 1.09001 * 110.85899 * 324.90439 * 7 5 3 38 38 H 1.09000 * 109.87638 * 262.77913 * 8 7 5 39 39 H 1.08994 * 109.88358 * 141.60878 * 8 7 5 40 40 H 1.08001 * 119.75045 * 359.97438 * 14 13 10 41 41 H 1.08001 * 119.87437 * 180.02562 * 15 14 13 42 42 H 1.08007 * 120.12287 * 180.02562 * 16 15 14 43 43 H 0.96995 * 120.00368 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.12532 * 359.97438 * 26 13 10 45 45 H 1.08992 * 110.36694 * 94.70459 * 27 9 8 46 46 H 1.09001 * 110.36354 * 216.91994 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 1.2532 5 6 3.4685 1.4310 -0.2382 6 1 4.0096 0.9118 0.5529 7 6 3.9657 2.8966 -0.3842 8 6 5.2258 2.7489 -1.2628 9 7 5.1031 1.4780 -1.9918 10 16 6.2198 0.8585 -3.0461 11 8 7.4675 1.4432 -2.6984 12 8 6.0024 -0.5453 -3.0818 13 6 5.8158 1.4654 -4.6501 14 6 6.3621 2.6599 -5.0945 15 6 6.0535 3.1491 -6.3542 16 6 5.2000 2.4520 -7.1787 17 6 4.6397 1.2388 -6.7384 18 6 3.7620 0.5138 -7.5770 19 1 3.6473 -0.5521 -7.4460 20 6 3.0420 1.1773 -8.5769 21 7 2.9012 2.4771 -8.5286 22 14 2.2818 0.2071 -9.9806 23 1 0.9045 -0.2050 -9.6086 24 1 2.2329 1.0550 -11.1988 25 1 3.1039 -0.9999 -10.2502 26 6 4.9636 0.7495 -5.4593 27 6 3.8215 0.8465 -1.6286 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 2.0707 3.0806 1.2392 34 1 0.5857 2.1062 1.3554 35 1 2.0948 1.5200 2.0951 36 1 4.2210 3.3158 0.5889 37 1 3.2175 3.5123 -0.8836 38 1 6.1160 2.7310 -0.6340 39 1 5.2847 3.5771 -1.9688 40 1 7.0332 3.2132 -4.4543 41 1 6.4852 4.0803 -6.6903 42 1 4.9612 2.8348 -8.1601 43 1 2.4019 2.9369 -9.2214 44 1 4.5430 -0.1829 -5.1130 45 1 3.0517 1.1052 -2.3555 46 1 3.9359 -0.2358 -1.5671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365009562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:15 Heat of formation + Delta-G solvation = -67.389152 kcal Electronic energy + Delta-G solvation = -27803.404750 eV Core-core repulsion = 24011.751533 eV Total energy + Delta-G solvation = -3791.653217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.20233 -39.46323 -38.34356 -37.30307 -36.97692 -35.68294 -32.34211 -31.93550 -31.60732 -30.40527 -29.82132 -27.36201 -26.32429 -23.90560 -23.50170 -22.83761 -22.37292 -21.12219 -20.30813 -19.56809 -18.62461 -17.87158 -17.57063 -16.90392 -16.76375 -16.48536 -16.16712 -15.73188 -15.37693 -15.29606 -15.08716 -14.60744 -14.35081 -14.32388 -14.21833 -13.93868 -13.72680 -13.36243 -13.29801 -13.16939 -13.12539 -13.05263 -13.01716 -12.84095 -12.69167 -12.62941 -12.35205 -12.30539 -12.21550 -11.84298 -11.73178 -11.58851 -11.57387 -11.37595 -11.14971 -10.06020 -9.83703 -9.57893 -9.28455 -8.74359 -6.46723 -0.62269 0.37983 0.82659 1.36734 1.43789 1.51890 2.00717 2.17109 2.54625 2.70168 2.92011 3.19174 3.49227 3.54211 3.76021 4.08950 4.14662 4.27642 4.29836 4.33151 4.40054 4.41720 4.54223 4.62842 4.67167 4.71191 4.80483 4.82297 4.87169 4.88890 4.93293 4.98394 5.02321 5.07124 5.11871 5.16425 5.17850 5.25642 5.37270 5.41457 5.45093 5.54765 5.86248 5.91697 6.08404 6.12510 6.15777 6.50442 6.77971 6.82753 8.23798 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003871 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.336626 B = 7230.996214 C = 8817.088012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.041 3.959 3 N -0.545 5.545 4 C 0.023 3.977 5 C 0.080 3.920 6 H 0.067 0.933 7 C -0.108 4.108 8 C 0.110 3.890 9 N -1.009 6.009 10 S 2.731 3.269 11 O -0.979 6.979 12 O -0.990 6.990 13 C -0.640 4.640 14 C -0.149 4.149 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.064 3.936 18 C -0.499 4.499 19 H 0.078 0.922 20 C 0.039 3.961 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.260 1.260 24 H -0.262 1.262 25 H -0.261 1.261 26 C -0.146 4.146 27 C 0.119 3.881 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.292 0.708 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 1.851 16.329 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 N -0.270 5.270 4 C -0.125 4.125 5 C -0.030 4.030 6 H 0.085 0.915 7 C -0.147 4.147 8 C -0.015 4.015 9 N -0.849 5.849 10 S 2.826 3.174 11 O -0.970 6.970 12 O -0.980 6.980 13 C -0.729 4.729 14 C -0.170 4.170 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.061 3.939 18 C -0.527 4.527 19 H 0.096 0.904 20 C -0.176 4.176 21 N -0.446 5.446 22 Si 0.802 3.198 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.185 1.185 26 C -0.168 4.168 27 C -0.006 4.006 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.084 0.916 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.803 1.717 16.006 16.541 hybrid contribution -0.325 -0.456 -0.969 1.119 sum -4.129 1.261 15.038 15.645 Atomic orbital electron populations 1.21751 0.93842 1.02175 1.02332 1.22214 0.97040 0.88488 1.00922 1.61993 1.11789 1.16683 1.36537 1.22477 1.02253 0.99332 0.88396 1.22760 0.88447 0.97187 0.94655 0.91484 1.22724 0.95609 0.95482 1.00845 1.22005 1.00293 0.84035 0.95138 1.58335 1.34301 1.33912 1.58347 1.00410 0.72098 0.72275 0.72577 1.93481 1.40580 1.79229 1.83663 1.93480 1.86174 1.30877 1.87492 1.30321 1.12079 1.07624 1.22841 1.20452 1.02974 0.95514 0.98075 1.21153 0.98468 0.99748 0.94723 1.21644 0.97376 0.97231 0.99807 1.18034 0.91584 0.92957 0.91334 1.19851 1.22254 0.96226 1.14419 0.90390 1.26735 0.94884 0.95890 1.00132 1.69810 1.31715 1.10600 1.32464 0.85199 0.78908 0.78981 0.76666 1.18482 1.18659 1.18466 1.20826 1.01178 1.00042 0.94714 1.22096 0.83991 0.97282 0.97279 0.92974 0.91438 0.91668 0.91656 0.93974 0.90244 0.90418 0.94980 0.87286 0.89629 0.89776 0.91107 0.85100 0.85374 0.86775 0.89667 0.87480 0.91577 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.84 71.98 0.71 -1.62 16 2 C 0.04 0.77 5.56 86.30 0.48 1.25 16 3 N -0.54 -10.56 4.66 -888.30 -4.14 -14.70 16 4 C 0.02 0.32 9.15 127.69 1.17 1.49 16 5 C 0.08 1.66 2.72 46.41 0.13 1.79 16 6 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 7 C -0.11 -1.96 5.36 31.89 0.17 -1.79 16 8 C 0.11 2.63 6.99 86.73 0.61 3.23 16 9 N -1.01 -31.20 3.70 -506.44 -1.87 -33.08 16 10 S 2.73 106.21 5.93 -56.49 -0.34 105.87 16 11 O -0.98 -39.58 16.85 -128.00 -2.16 -41.74 16 12 O -0.99 -42.98 16.58 -128.00 -2.12 -45.11 16 13 C -0.64 -28.98 5.97 22.22 0.13 -28.84 16 14 C -0.15 -6.54 9.53 22.46 0.21 -6.33 16 15 C -0.12 -5.53 10.02 22.22 0.22 -5.31 16 16 C -0.14 -7.28 8.70 22.73 0.20 -7.08 16 17 C 0.06 3.49 5.57 -21.29 -0.12 3.37 16 18 C -0.50 -26.82 9.05 23.46 0.21 -26.61 16 19 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 20 C 0.04 1.94 5.14 85.26 0.44 2.38 16 21 N -0.82 -41.44 10.97 21.83 0.24 -41.20 16 22 Si 0.98 37.37 29.59 68.60 2.03 39.40 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 26 C -0.15 -7.44 9.26 22.73 0.21 -7.23 16 27 C 0.12 3.36 5.54 86.85 0.48 3.84 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.89 6.59 -2.39 -0.02 0.87 16 31 H 0.06 1.40 6.70 -2.39 -0.02 1.39 16 32 H 0.04 0.71 8.11 -2.39 -0.02 0.69 16 33 H 0.08 0.96 6.94 -2.39 -0.02 0.94 16 34 H 0.08 0.98 6.55 -2.39 -0.02 0.97 16 35 H 0.03 0.40 8.13 -2.38 -0.02 0.38 16 36 H 0.11 1.32 7.98 -2.39 -0.02 1.30 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.13 4.99 7.60 -2.91 -0.02 4.96 16 41 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.11 6.02 6.18 -2.91 -0.02 6.00 16 43 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 44 H 0.11 5.32 7.60 -2.91 -0.02 5.30 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.07 2.14 7.41 -2.39 -0.02 2.13 16 Total: -1.00 -65.94 379.03 -2.14 -68.08 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.97 Total: 29.95 kcal Atomic # 6 Polarization: -72.72 SS G_CDS: 5.25 Total: -67.48 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -5.78 Total: -88.98 kcal Atomic # 8 Polarization: -82.57 SS G_CDS: -4.28 Total: -86.85 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Atomic # 16 Polarization: 106.21 SS G_CDS: -0.34 Total: 105.87 kcal Total: -65.94 -2.14 -68.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365009562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.692 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds