Wall clock time and date at job start Tue Mar 31 2020 21:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47082 * 2 1 4 4 C 1.46497 * 119.99924 * 274.04680 * 3 2 1 5 5 C 1.50708 * 109.46977 * 280.97354 * 4 3 2 6 6 H 1.07999 * 119.99681 * 3.32314 * 5 4 3 7 7 C 1.37879 * 119.99849 * 183.32893 * 5 4 3 8 8 N 1.31508 * 120.00065 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99788 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46867 * 60.00044 * 9 7 5 11 11 H 1.48495 * 109.47007 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47257 * 299.99924 * 9 7 5 13 13 S 1.65593 * 120.00115 * 94.04281 * 3 2 1 14 14 O 1.42100 * 106.40662 * 336.36236 * 13 3 2 15 15 O 1.42103 * 106.40393 * 203.43866 * 13 3 2 16 16 N 1.65600 * 107.21833 * 89.90010 * 13 3 2 17 17 C 1.46508 * 119.99967 * 65.60049 * 16 13 3 18 18 C 1.52993 * 109.47198 * 164.42549 * 17 16 13 19 19 C 1.53006 * 109.61730 * 300.22240 * 18 17 16 20 20 F 1.39899 * 109.46812 * 299.77832 * 19 18 17 21 21 C 1.53184 * 109.54425 * 60.44537 * 18 17 16 22 22 C 1.53093 * 109.16465 * 176.84998 * 21 18 17 23 23 O 1.42904 * 109.41283 * 302.39111 * 22 21 18 24 24 C 1.42901 * 114.10048 * 61.15470 * 23 22 21 25 25 C 1.53087 * 109.41785 * 298.84592 * 24 23 22 26 26 H 1.08998 * 109.46592 * 185.05286 * 1 2 3 27 27 H 1.09004 * 109.47020 * 305.05402 * 1 2 3 28 28 H 1.08993 * 109.46844 * 65.05533 * 1 2 3 29 29 H 1.08998 * 109.47299 * 240.00138 * 2 1 3 30 30 H 1.08997 * 109.47161 * 119.99336 * 2 1 3 31 31 H 1.09006 * 109.47503 * 40.96458 * 4 3 2 32 32 H 1.08999 * 109.47586 * 160.96930 * 4 3 2 33 33 H 0.97001 * 120.00316 * 180.02562 * 8 7 5 34 34 H 0.97002 * 120.00158 * 245.59880 * 16 13 3 35 35 H 1.08993 * 109.46874 * 44.42399 * 17 16 13 36 36 H 1.08998 * 109.46653 * 284.42219 * 17 16 13 37 37 H 1.08999 * 109.46988 * 59.77590 * 19 18 17 38 38 H 1.08995 * 109.47011 * 179.77667 * 19 18 17 39 39 H 1.09003 * 109.51768 * 296.75051 * 21 18 17 40 40 H 1.08995 * 109.52635 * 56.93987 * 21 18 17 41 41 H 1.08995 * 109.48114 * 182.40613 * 22 21 18 42 42 H 1.09003 * 109.49296 * 62.37533 * 22 21 18 43 43 H 1.09001 * 109.48119 * 178.86177 * 24 23 22 44 44 H 1.08994 * 109.48686 * 58.83457 * 24 23 22 45 45 H 1.09006 * 109.52209 * 297.70644 * 25 24 23 46 46 H 1.08998 * 109.52621 * 177.51361 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1781 2.1017 -1.2655 5 6 3.4577 1.6673 -1.9328 6 1 4.0615 0.8900 -1.4883 7 6 3.8574 2.2622 -3.1107 8 7 3.1218 3.2083 -3.6521 9 14 5.4437 1.7242 -3.9374 10 1 5.3611 0.2803 -4.2747 11 1 5.6466 2.5124 -5.1794 12 1 6.5848 1.9525 -3.0149 13 16 2.3897 2.1282 1.4305 14 8 1.6467 1.4567 2.4386 15 8 2.2892 3.5254 1.1916 16 7 3.9865 1.8211 1.7438 17 6 5.0235 2.3640 0.8627 18 6 6.3823 2.2774 1.5604 19 6 6.3434 3.0807 2.8621 20 9 6.0575 4.4198 2.5752 21 6 6.7062 0.8129 1.8716 22 6 8.1007 0.7286 2.4977 23 8 9.0579 1.3008 1.6042 24 6 8.8329 2.6818 1.3142 25 6 7.4679 2.8446 0.6405 26 1 -0.3632 -1.0237 0.0905 27 1 -0.3633 0.5903 0.8413 28 1 -0.3633 0.4334 -0.9318 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.3343 1.8799 -1.9190 32 1 2.2154 3.1736 -1.0713 33 1 3.4027 3.6266 -4.4810 34 1 4.2353 1.2818 2.5108 35 1 4.7978 3.4056 0.6348 36 1 5.0526 1.7877 -0.0621 37 1 5.5707 2.6761 3.5157 38 1 7.3112 3.0141 3.3591 39 1 5.9688 0.4172 2.5700 40 1 6.6850 0.2313 0.9499 41 1 8.3539 -0.3153 2.6820 42 1 8.1100 1.2767 3.4399 43 1 9.6136 3.0449 0.6458 44 1 8.8517 3.2557 2.2406 45 1 7.4620 2.3040 -0.3060 46 1 7.2751 3.9018 0.4585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365707386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:13 Heat of formation + Delta-G solvation = -209.370799 kcal Electronic energy + Delta-G solvation = -30487.747261 eV Core-core repulsion = 26259.168034 eV Total energy + Delta-G solvation = -4228.579228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.63271 -40.81214 -38.33934 -37.70849 -37.34225 -36.89465 -34.67301 -34.00209 -32.09613 -31.51383 -28.54359 -28.31855 -27.41759 -24.93743 -24.58637 -23.62447 -23.26550 -20.41103 -19.98019 -18.81450 -18.57432 -18.34973 -17.56695 -17.29105 -17.00926 -16.84520 -16.75834 -16.58531 -16.23343 -15.62656 -15.57770 -15.33230 -14.83101 -14.61685 -14.50058 -14.30739 -13.87746 -13.78916 -13.69369 -13.58913 -13.34411 -13.22959 -13.10467 -13.02857 -12.81910 -12.73026 -12.67899 -12.30052 -12.22979 -12.12178 -11.96977 -11.88909 -11.72738 -11.57449 -11.48991 -11.11120 -10.55449 -10.46260 -10.32533 -9.77987 -8.14548 -6.27487 -0.29197 1.45129 1.45260 1.52505 1.99719 2.43274 2.60770 2.98222 3.17695 3.31080 3.46161 3.51039 3.56885 3.88808 3.97605 4.02745 4.10261 4.19392 4.28065 4.34345 4.44250 4.50802 4.54961 4.56436 4.66913 4.69022 4.74475 4.80899 4.87442 4.90913 5.00096 5.05312 5.11786 5.17038 5.26929 5.27525 5.30116 5.41719 5.54233 5.79015 5.90143 6.13046 6.21306 6.27226 6.83952 7.42037 8.93581 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009477 B = 0.006114 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.909614 B = 4578.799051 C = 6245.357196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.259 3.741 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.929 5.929 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.259 1.259 13 S 2.798 3.202 14 O -1.003 7.003 15 O -1.020 7.020 16 N -1.111 6.111 17 C 0.131 3.869 18 C -0.092 4.092 19 C 0.059 3.941 20 F -0.230 7.230 21 C -0.142 4.142 22 C 0.055 3.945 23 O -0.398 6.398 24 C 0.066 3.934 25 C -0.151 4.151 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.015 0.985 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.421 0.579 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.711 -7.564 13.192 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.136 3.864 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.568 5.568 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.219 1.219 12 H -0.184 1.184 13 S 2.806 3.194 14 O -0.987 6.987 15 O -1.004 7.004 16 N -0.875 5.875 17 C 0.005 3.995 18 C -0.094 4.094 19 C 0.004 3.996 20 F -0.211 7.211 21 C -0.179 4.179 22 C -0.021 4.021 23 O -0.317 6.317 24 C -0.011 4.011 25 C -0.189 4.189 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.178 -6.889 13.343 17.599 hybrid contribution 0.290 0.167 -1.007 1.062 sum 9.468 -6.721 12.335 16.941 Atomic orbital electron populations 1.22198 0.96157 1.03157 1.01201 1.21248 0.94430 0.81195 1.03425 1.57602 1.79429 1.24174 1.22362 1.18732 0.96484 0.91011 0.80220 1.21728 1.07269 1.20778 1.07401 0.90426 1.25753 1.00119 0.94791 0.97862 1.70065 1.40083 1.26424 1.20255 0.85731 0.80386 0.78442 0.77956 1.19245 1.21902 1.18396 1.01158 0.73238 0.72693 0.72286 1.93532 1.70369 1.76305 1.58473 1.93539 1.86744 1.34033 1.86056 1.55584 1.24130 1.68291 1.39448 1.21344 0.86354 0.98687 0.93122 1.21381 0.94226 0.97885 0.95936 1.22425 1.03961 0.76324 0.96841 1.92747 1.95605 1.37630 1.95164 1.22233 0.99087 0.93244 1.03370 1.22838 0.86828 1.00491 0.91947 1.87929 1.51663 1.25093 1.67036 1.22627 0.95741 0.82678 1.00050 1.22212 0.95359 1.02120 0.99252 0.89026 0.93718 0.93453 0.89960 0.89387 0.96729 0.96407 0.92722 0.74181 0.93081 0.90124 0.89312 0.87825 0.88319 0.90729 0.86819 0.91156 0.87782 0.91556 0.91505 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.07 10.24 71.98 0.74 -4.33 16 2 C 0.12 3.96 6.01 86.38 0.52 4.48 16 3 N -0.99 -39.71 2.84 -519.82 -1.48 -41.19 16 4 C 0.26 12.84 5.48 85.64 0.47 13.31 16 5 C -0.53 -26.47 7.94 25.60 0.20 -26.27 16 6 H 0.08 3.57 6.74 -2.91 -0.02 3.55 16 7 C 0.01 0.76 5.46 84.66 0.46 1.22 16 8 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 9 Si 0.95 40.80 29.54 68.60 2.03 42.83 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 13 S 2.80 108.06 6.11 -56.49 -0.34 107.72 16 14 O -1.00 -38.39 17.09 -128.00 -2.19 -40.57 16 15 O -1.02 -49.06 16.09 -128.00 -2.06 -51.12 16 16 N -1.11 -33.16 5.38 -187.49 -1.01 -34.16 16 17 C 0.13 4.27 4.94 86.38 0.43 4.70 16 18 C -0.09 -2.21 0.39 -52.06 -0.02 -2.23 16 19 C 0.06 1.25 5.65 71.98 0.41 1.66 16 20 F -0.23 -6.85 16.30 44.97 0.73 -6.12 16 21 C -0.14 -2.57 4.70 30.69 0.14 -2.42 16 22 C 0.06 0.83 6.57 72.01 0.47 1.30 16 23 O -0.40 -8.31 10.77 -148.98 -1.60 -9.92 16 24 C 0.07 1.29 6.57 72.01 0.47 1.76 16 25 C -0.15 -3.79 4.83 30.68 0.15 -3.65 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.04 1.42 8.10 -2.38 -0.02 1.40 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 2.65 8.05 -2.39 -0.02 2.63 16 30 H 0.09 2.38 7.65 -2.39 -0.02 2.36 16 31 H 0.01 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.02 1.01 6.83 -2.39 -0.02 1.00 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.42 9.19 6.56 -96.74 -0.63 8.55 16 35 H 0.05 2.03 7.41 -2.39 -0.02 2.01 16 36 H 0.08 2.91 5.59 -2.39 -0.01 2.90 16 37 H 0.09 1.62 7.20 -2.39 -0.02 1.60 16 38 H 0.10 1.56 5.01 -2.39 -0.01 1.54 16 39 H 0.10 1.33 6.73 -2.39 -0.02 1.32 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 0.78 6.60 -2.39 -0.02 0.76 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 1.08 6.61 -2.39 -0.02 1.07 16 45 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.07 1.99 7.73 -2.39 -0.02 1.97 16 Total: -1.00 -70.08 369.60 -0.84 -70.92 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.36 Total: 25.09 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.44 Total: -10.46 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -2.20 Total: -128.36 kcal Atomic # 8 Polarization: -95.76 SS G_CDS: -5.85 Total: -101.61 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.73 Total: -6.12 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 108.06 SS G_CDS: -0.34 Total: 107.72 kcal Total: -70.08 -0.84 -70.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365707386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.449 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds