Wall clock time and date at job start Tue Mar 31 2020 21:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47731 * 2 1 4 4 C 1.46897 * 110.99474 * 293.95264 * 3 2 1 5 5 C 1.46894 * 111.00402 * 169.99383 * 3 2 1 6 6 H 1.09000 * 110.63750 * 56.85446 * 5 3 2 7 7 C 1.55156 * 110.87291 * 293.61228 * 5 3 2 8 8 C 1.55129 * 101.48254 * 205.89701 * 7 5 3 9 9 N 1.47425 * 104.72540 * 37.29482 * 8 7 5 10 10 S 1.65603 * 125.64757 * 155.81614 * 9 8 7 11 11 O 1.42101 * 106.40015 * 156.15108 * 10 9 8 12 12 O 1.42096 * 106.40327 * 23.23393 * 10 9 8 13 13 C 1.76205 * 107.21613 * 269.69010 * 10 9 8 14 14 C 1.38630 * 119.74374 * 90.00387 * 13 10 9 15 15 C 1.37623 * 120.24117 * 180.22759 * 14 13 10 16 16 C 1.40707 * 119.74849 * 359.52215 * 15 14 13 17 17 C 1.41400 * 120.24843 * 180.22492 * 16 15 14 18 18 H 1.07994 * 120.00480 * 204.52708 * 17 16 15 19 19 C 1.39950 * 119.99509 * 24.53120 * 17 16 15 20 20 N 1.30821 * 119.99991 * 17.72383 * 19 17 16 21 21 Si 1.86800 * 119.99756 * 197.72017 * 19 17 16 22 22 H 1.48499 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46931 * 119.99981 * 21 19 17 24 24 H 1.48490 * 109.47155 * 239.99623 * 21 19 17 25 25 C 1.40715 * 119.51064 * 0.47652 * 16 15 14 26 26 C 1.37618 * 119.74364 * 359.74989 * 25 16 15 27 27 C 1.47022 * 108.69883 * 335.55479 * 9 8 7 28 28 H 1.09001 * 109.47619 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47096 * 300.00735 * 1 2 3 30 30 H 1.09011 * 109.46522 * 60.00332 * 1 2 3 31 31 H 1.09001 * 109.47486 * 239.98948 * 2 1 3 32 32 H 1.09011 * 109.46522 * 119.99668 * 2 1 3 33 33 H 1.08999 * 109.47264 * 296.04188 * 4 3 2 34 34 H 1.09000 * 109.47834 * 56.04374 * 4 3 2 35 35 H 1.09007 * 109.47082 * 176.04257 * 4 3 2 36 36 H 1.09001 * 111.00358 * 324.13184 * 7 5 3 37 37 H 1.08999 * 111.00505 * 87.95393 * 7 5 3 38 38 H 1.09003 * 110.49994 * 278.44796 * 8 7 5 39 39 H 1.09000 * 110.34135 * 156.06165 * 8 7 5 40 40 H 1.08001 * 119.88189 * 359.95752 * 14 13 10 41 41 H 1.08002 * 120.12205 * 179.72192 * 15 14 13 42 42 H 0.97005 * 119.99803 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.12804 * 179.73261 * 25 16 15 44 44 H 1.08002 * 119.87235 * 180.02562 * 26 25 16 45 45 H 1.08995 * 109.88273 * 120.70619 * 27 9 8 46 46 H 1.09007 * 109.87718 * 241.71384 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6704 2.0668 -1.2533 5 6 3.4686 1.4310 0.2383 6 1 3.9994 0.8371 -0.5058 7 6 3.8087 0.9459 1.6723 8 6 5.1489 1.6808 1.9371 9 7 4.9850 3.0003 1.3004 10 16 5.8064 4.3785 1.7104 11 8 5.7854 5.2149 0.5618 12 8 7.0070 3.9570 2.3429 13 6 4.8571 5.2039 2.9443 14 6 5.0749 4.9203 4.2837 15 6 4.3361 5.5554 5.2557 16 6 3.3638 6.5030 4.8861 17 6 2.6020 7.1653 5.8762 18 1 1.6306 7.5681 5.6306 19 6 3.1071 7.2990 7.1745 20 7 4.3857 7.1369 7.3989 21 14 1.9555 7.7088 8.5871 22 1 0.5685 7.8398 8.0729 23 1 2.0073 6.6231 9.5989 24 1 2.3751 8.9886 9.2124 25 6 3.1514 6.7828 3.5235 26 6 3.8986 6.1321 2.5683 27 6 3.9760 2.8884 0.2369 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.1771 1.5788 -2.0859 34 1 0.5921 2.0178 -1.4053 35 1 1.9826 3.1097 -1.1989 36 1 3.0420 1.2567 2.3820 37 1 3.9458 -0.1352 1.6968 38 1 5.9777 1.1396 1.4807 39 1 5.3134 1.7944 3.0086 40 1 5.8240 4.1951 4.5653 41 1 4.5043 5.3297 6.2984 42 1 4.7357 7.2292 8.2989 43 1 2.4047 7.5051 3.2283 44 1 3.7376 6.3456 1.5219 45 1 3.1488 3.5691 0.4377 46 1 4.4258 3.1259 -0.7272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413489806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:22 Heat of formation + Delta-G solvation = -51.842386 kcal Electronic energy + Delta-G solvation = -27729.659789 eV Core-core repulsion = 23938.680730 eV Total energy + Delta-G solvation = -3790.979058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.26257 -37.54016 -36.50300 -36.31139 -35.11793 -34.01335 -31.23148 -30.23874 -30.20335 -29.43807 -27.93083 -26.02194 -25.77887 -22.09477 -21.99223 -21.41094 -21.08486 -20.17988 -18.52585 -17.60505 -17.28328 -16.92433 -16.25366 -15.51489 -15.23297 -15.20510 -14.68799 -14.51100 -14.12028 -13.78064 -13.55089 -13.32435 -13.19937 -12.93530 -12.68830 -12.39764 -12.33702 -12.16536 -12.15163 -12.00026 -11.71760 -11.46650 -11.44772 -11.40132 -11.30009 -11.19239 -11.13452 -10.95417 -10.86715 -10.84692 -10.82647 -10.39852 -9.73906 -9.59612 -9.46937 -8.64747 -8.48540 -7.92342 -7.67236 -7.11666 -4.77318 1.17550 2.28520 2.88956 2.91382 2.95618 2.96861 3.54801 3.68225 3.81168 4.27013 4.36807 4.56676 4.65039 4.83146 4.99552 5.04571 5.10281 5.28822 5.30267 5.34903 5.37397 5.41073 5.48183 5.58339 5.66407 5.77093 5.77731 5.82066 5.87209 5.88710 6.06699 6.09221 6.13169 6.20477 6.35441 6.60433 6.70735 6.78018 6.89539 6.95795 7.00058 7.08188 7.36861 7.45568 7.66138 7.79780 7.99600 8.34613 8.54062 8.67967 9.79829 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003452 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.897159 B = 8110.165856 C = 9393.763471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.016 3.984 5 C 0.074 3.926 6 H 0.055 0.945 7 C -0.121 4.121 8 C 0.125 3.875 9 N -1.015 6.015 10 S 2.706 3.294 11 O -0.981 6.981 12 O -0.978 6.978 13 C -0.785 4.785 14 C -0.015 4.015 15 C -0.183 4.183 16 C 0.140 3.860 17 C -0.436 4.436 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.765 5.765 21 Si 0.916 3.084 22 H -0.256 1.256 23 H -0.268 1.268 24 H -0.270 1.270 25 C -0.238 4.238 26 C 0.003 3.997 27 C 0.131 3.869 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.122 0.878 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 -12.801 -9.245 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.257 5.257 4 C -0.132 4.132 5 C -0.036 4.036 6 H 0.073 0.927 7 C -0.161 4.161 8 C -0.001 4.001 9 N -0.851 5.851 10 S 2.807 3.193 11 O -0.972 6.972 12 O -0.969 6.969 13 C -0.881 4.881 14 C -0.035 4.035 15 C -0.203 4.203 16 C 0.137 3.863 17 C -0.463 4.463 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.388 5.388 21 Si 0.740 3.260 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.258 4.258 26 C -0.017 4.017 27 C 0.005 3.995 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.450 -12.228 -9.072 15.863 hybrid contribution -0.587 -0.038 0.492 0.767 sum -5.038 -12.267 -8.580 15.794 Atomic orbital electron populations 1.21808 0.94821 1.01395 1.02682 1.22088 0.96125 0.88757 1.00751 1.62055 1.12687 1.15966 1.34988 1.22507 1.01562 0.99746 0.89392 1.22676 0.87469 0.96051 0.97374 0.92737 1.22897 0.97553 0.99442 0.96159 1.21904 0.96917 0.82877 0.98357 1.58870 1.56402 1.23587 1.46209 1.00912 0.73363 0.71334 0.73670 1.93469 1.87300 1.65939 1.50492 1.93482 1.43502 1.82295 1.77624 1.29189 1.25200 1.23168 1.10560 1.20237 0.95610 0.96434 0.91258 1.21330 1.00780 0.99599 0.98599 1.17848 0.89136 0.87705 0.91648 1.19967 1.03540 1.29367 0.93439 0.89422 1.26144 0.95394 0.92728 1.00741 1.69836 1.13189 1.31711 1.24022 0.86113 0.81174 0.79004 0.79754 1.17979 1.19250 1.19538 1.21016 1.05563 1.05920 0.93346 1.20137 0.91820 0.92157 0.97606 1.21604 0.91181 0.96504 0.90253 0.92458 0.91608 0.92696 0.95145 0.90523 0.95696 0.90982 0.90733 0.89140 0.90626 0.91774 0.90302 0.88000 0.86022 0.90021 0.88218 0.87947 0.90458 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.84 37.16 0.37 -0.81 16 2 C 0.05 0.44 5.58 -3.82 -0.02 0.42 16 3 N -0.53 -5.66 4.60 -232.68 -1.07 -6.73 16 4 C 0.02 0.15 9.05 60.06 0.54 0.69 16 5 C 0.07 0.83 2.63 -65.89 -0.17 0.66 16 6 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 7 C -0.12 -1.34 5.68 -24.46 -0.14 -1.47 16 8 C 0.13 1.66 6.99 -2.41 -0.02 1.65 16 9 N -1.01 -16.26 3.70 -111.29 -0.41 -16.67 16 10 S 2.71 54.52 5.93 -107.50 -0.64 53.88 16 11 O -0.98 -21.45 16.84 -57.17 -0.96 -22.41 16 12 O -0.98 -21.60 16.84 -57.17 -0.96 -22.56 16 13 C -0.78 -17.75 6.00 -39.29 -0.24 -17.99 16 14 C -0.02 -0.35 9.49 -39.66 -0.38 -0.73 16 15 C -0.18 -4.62 8.70 -38.87 -0.34 -4.96 16 16 C 0.14 3.60 5.57 -106.83 -0.60 3.00 16 17 C -0.44 -10.79 9.06 -37.74 -0.34 -11.13 16 18 H 0.09 2.05 7.91 -52.49 -0.41 1.64 16 19 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 20 N -0.77 -18.51 10.95 55.55 0.61 -17.90 16 21 Si 0.92 17.11 29.59 -169.99 -5.03 12.08 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 24 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 25 C -0.24 -5.72 9.80 -38.87 -0.38 -6.10 16 26 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 27 C 0.13 1.81 5.51 -3.07 -0.02 1.79 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.41 6.47 -51.92 -0.34 0.08 16 31 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.08 0.64 6.94 -51.92 -0.36 0.28 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16 35 H 0.07 0.74 6.64 -51.93 -0.34 0.40 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 2.23 7.60 -52.49 -0.40 1.83 16 41 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 42 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 43 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 44 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 45 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -30.11 378.74 -12.01 -42.11 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.05 Total: 6.19 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -2.19 Total: -33.70 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.87 Total: -41.31 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.93 Total: -44.97 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: 54.52 SS G_CDS: -0.64 Total: 53.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.11 -12.01 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413489806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.729 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds