Wall clock time and date at job start Tue Mar 31 2020 21:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47731 * 2 1 4 4 C 1.46897 * 110.99474 * 293.95264 * 3 2 1 5 5 C 1.46894 * 111.00402 * 169.99383 * 3 2 1 6 6 H 1.09000 * 110.63750 * 56.85446 * 5 3 2 7 7 C 1.55156 * 110.87291 * 293.61228 * 5 3 2 8 8 C 1.55129 * 101.48254 * 205.89701 * 7 5 3 9 9 N 1.47425 * 104.72540 * 37.29482 * 8 7 5 10 10 S 1.65603 * 125.64757 * 155.81614 * 9 8 7 11 11 O 1.42101 * 106.40015 * 156.15108 * 10 9 8 12 12 O 1.42096 * 106.40327 * 23.23393 * 10 9 8 13 13 C 1.76205 * 107.21613 * 269.69010 * 10 9 8 14 14 C 1.38630 * 119.74374 * 90.00387 * 13 10 9 15 15 C 1.37623 * 120.24117 * 180.22759 * 14 13 10 16 16 C 1.40707 * 119.74849 * 359.52215 * 15 14 13 17 17 C 1.41400 * 120.24843 * 180.22492 * 16 15 14 18 18 H 1.07994 * 120.00480 * 204.52708 * 17 16 15 19 19 C 1.39950 * 119.99509 * 24.53120 * 17 16 15 20 20 N 1.30821 * 119.99991 * 17.72383 * 19 17 16 21 21 Si 1.86800 * 119.99756 * 197.72017 * 19 17 16 22 22 H 1.48499 * 109.47128 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46931 * 119.99981 * 21 19 17 24 24 H 1.48490 * 109.47155 * 239.99623 * 21 19 17 25 25 C 1.40715 * 119.51064 * 0.47652 * 16 15 14 26 26 C 1.37618 * 119.74364 * 359.74989 * 25 16 15 27 27 C 1.47022 * 108.69883 * 335.55479 * 9 8 7 28 28 H 1.09001 * 109.47619 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47096 * 300.00735 * 1 2 3 30 30 H 1.09011 * 109.46522 * 60.00332 * 1 2 3 31 31 H 1.09001 * 109.47486 * 239.98948 * 2 1 3 32 32 H 1.09011 * 109.46522 * 119.99668 * 2 1 3 33 33 H 1.08999 * 109.47264 * 296.04188 * 4 3 2 34 34 H 1.09000 * 109.47834 * 56.04374 * 4 3 2 35 35 H 1.09007 * 109.47082 * 176.04257 * 4 3 2 36 36 H 1.09001 * 111.00358 * 324.13184 * 7 5 3 37 37 H 1.08999 * 111.00505 * 87.95393 * 7 5 3 38 38 H 1.09003 * 110.49994 * 278.44796 * 8 7 5 39 39 H 1.09000 * 110.34135 * 156.06165 * 8 7 5 40 40 H 1.08001 * 119.88189 * 359.95752 * 14 13 10 41 41 H 1.08002 * 120.12205 * 179.72192 * 15 14 13 42 42 H 0.97005 * 119.99803 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.12804 * 179.73261 * 25 16 15 44 44 H 1.08002 * 119.87235 * 180.02562 * 26 25 16 45 45 H 1.08995 * 109.88273 * 120.70619 * 27 9 8 46 46 H 1.09007 * 109.87718 * 241.71384 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6704 2.0668 -1.2533 5 6 3.4686 1.4310 0.2383 6 1 3.9994 0.8371 -0.5058 7 6 3.8087 0.9459 1.6723 8 6 5.1489 1.6808 1.9371 9 7 4.9850 3.0003 1.3004 10 16 5.8064 4.3785 1.7104 11 8 5.7854 5.2149 0.5618 12 8 7.0070 3.9570 2.3429 13 6 4.8571 5.2039 2.9443 14 6 5.0749 4.9203 4.2837 15 6 4.3361 5.5554 5.2557 16 6 3.3638 6.5030 4.8861 17 6 2.6020 7.1653 5.8762 18 1 1.6306 7.5681 5.6306 19 6 3.1071 7.2990 7.1745 20 7 4.3857 7.1369 7.3989 21 14 1.9555 7.7088 8.5871 22 1 0.5685 7.8398 8.0729 23 1 2.0073 6.6231 9.5989 24 1 2.3751 8.9886 9.2124 25 6 3.1514 6.7828 3.5235 26 6 3.8986 6.1321 2.5683 27 6 3.9760 2.8884 0.2369 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.1771 1.5788 -2.0859 34 1 0.5921 2.0178 -1.4053 35 1 1.9826 3.1097 -1.1989 36 1 3.0420 1.2567 2.3820 37 1 3.9458 -0.1352 1.6968 38 1 5.9777 1.1396 1.4807 39 1 5.3134 1.7944 3.0086 40 1 5.8240 4.1951 4.5653 41 1 4.5043 5.3297 6.2984 42 1 4.7357 7.2292 8.2989 43 1 2.4047 7.5051 3.2283 44 1 3.7376 6.3456 1.5219 45 1 3.1488 3.5691 0.4377 46 1 4.4258 3.1259 -0.7272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413489806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:21 Heat of formation + Delta-G solvation = -71.265955 kcal Electronic energy + Delta-G solvation = -27730.502058 eV Core-core repulsion = 23938.680730 eV Total energy + Delta-G solvation = -3791.821327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19642 -39.39037 -38.20735 -37.24443 -36.83802 -35.81503 -32.09317 -32.02924 -31.32079 -31.18281 -28.87834 -27.63041 -26.82396 -23.39249 -23.15338 -22.84932 -22.73608 -21.04186 -19.97707 -19.43996 -18.80816 -18.33088 -17.48228 -17.22015 -16.61200 -15.97446 -15.85608 -15.82514 -15.36641 -15.27424 -14.97394 -14.77232 -14.38626 -14.16245 -14.03503 -13.94220 -13.68862 -13.54743 -13.22915 -13.13727 -13.07306 -12.97586 -12.90004 -12.88728 -12.71440 -12.58964 -12.40505 -12.21966 -11.99410 -11.82382 -11.76630 -11.56643 -11.55231 -11.37165 -11.21972 -9.96637 -9.76504 -9.56507 -9.23903 -8.87781 -6.65786 -0.42268 0.47519 1.04326 1.35732 1.41648 1.53519 2.10809 2.15778 2.52171 2.86184 2.97716 3.29256 3.50460 3.59922 3.78050 4.15412 4.18535 4.27714 4.29022 4.34966 4.37752 4.47479 4.56651 4.61099 4.65065 4.70265 4.82071 4.85171 4.88429 4.91201 4.94672 4.99389 5.07606 5.08570 5.16441 5.19820 5.22865 5.27958 5.42898 5.49143 5.54380 5.58931 5.76435 5.92375 6.14173 6.15505 6.19568 6.47851 6.67324 6.79965 8.07714 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003452 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.897159 B = 8110.165856 C = 9393.763471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 N -0.549 5.549 4 C 0.015 3.985 5 C 0.083 3.917 6 H 0.074 0.926 7 C -0.112 4.112 8 C 0.113 3.887 9 N -1.013 6.013 10 S 2.736 3.264 11 O -0.998 6.998 12 O -0.997 6.997 13 C -0.797 4.797 14 C -0.020 4.020 15 C -0.206 4.206 16 C 0.112 3.888 17 C -0.465 4.465 18 H 0.092 0.908 19 C 0.034 3.966 20 N -0.799 5.799 21 Si 0.994 3.006 22 H -0.252 1.252 23 H -0.260 1.260 24 H -0.263 1.263 25 C -0.256 4.256 26 C -0.002 4.002 27 C 0.122 3.878 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.299 0.701 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.065 0.935 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -14.467 -9.833 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.077 4.077 3 N -0.275 5.275 4 C -0.133 4.133 5 C -0.027 4.027 6 H 0.091 0.909 7 C -0.151 4.151 8 C -0.012 4.012 9 N -0.851 5.851 10 S 2.834 3.166 11 O -0.989 6.989 12 O -0.988 6.988 13 C -0.890 4.890 14 C -0.040 4.040 15 C -0.226 4.226 16 C 0.109 3.891 17 C -0.492 4.492 18 H 0.110 0.890 19 C -0.186 4.186 20 N -0.421 5.421 21 Si 0.812 3.188 22 H -0.176 1.176 23 H -0.184 1.184 24 H -0.187 1.187 25 C -0.276 4.276 26 C -0.021 4.021 27 C -0.003 4.003 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.139 0.861 45 H 0.083 0.917 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.284 -13.875 -9.649 17.707 hybrid contribution -0.291 0.399 0.556 0.743 sum -5.575 -13.476 -9.094 17.186 Atomic orbital electron populations 1.21786 0.94414 1.02196 1.02023 1.22148 0.96441 0.87673 1.01445 1.62040 1.12234 1.17404 1.35809 1.22518 1.02233 0.99159 0.89360 1.22607 0.88172 0.94055 0.97896 0.90865 1.22864 0.95585 1.01042 0.95622 1.22255 0.99167 0.81703 0.98089 1.58488 1.56634 1.23252 1.46774 0.99960 0.72684 0.71467 0.72512 1.93439 1.87519 1.67361 1.50565 1.93450 1.44648 1.82683 1.78040 1.29690 1.24757 1.23436 1.11131 1.20431 0.95533 0.96391 0.91666 1.21351 1.02061 1.00671 0.98517 1.18199 0.89826 0.88395 0.92728 1.20263 1.03923 1.30353 0.94646 0.88952 1.27058 0.96794 0.91906 1.02806 1.69869 1.14927 1.32054 1.25299 0.84980 0.78758 0.79024 0.75989 1.17557 1.18435 1.18710 1.21250 1.06466 1.06673 0.93231 1.20408 0.91527 0.91805 0.98401 1.21835 0.90321 0.98541 0.89622 0.90948 0.93088 0.92511 0.94035 0.90110 0.94610 0.90191 0.91807 0.90673 0.87341 0.89599 0.91003 0.86816 0.87048 0.89013 0.87070 0.86057 0.91651 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.84 71.98 0.71 -1.29 16 2 C 0.05 0.74 5.58 86.30 0.48 1.22 16 3 N -0.55 -10.55 4.60 -890.08 -4.09 -14.65 16 4 C 0.02 0.26 9.05 127.69 1.16 1.41 16 5 C 0.08 1.65 2.63 46.10 0.12 1.77 16 6 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.11 -2.20 5.68 32.06 0.18 -2.01 16 8 C 0.11 2.78 6.99 86.93 0.61 3.39 16 9 N -1.01 -31.32 3.70 -506.02 -1.87 -33.19 16 10 S 2.74 109.22 5.93 -56.49 -0.34 108.89 16 11 O -1.00 -43.09 16.84 -128.00 -2.16 -45.25 16 12 O -1.00 -43.63 16.84 -128.00 -2.16 -45.78 16 13 C -0.80 -36.52 6.00 22.46 0.13 -36.39 16 14 C -0.02 -0.98 9.49 22.22 0.21 -0.77 16 15 C -0.21 -10.82 8.70 22.73 0.20 -10.62 16 16 C 0.11 5.95 5.57 -21.29 -0.12 5.83 16 17 C -0.47 -23.62 9.06 23.46 0.21 -23.41 16 18 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 19 C 0.03 1.58 5.14 85.26 0.44 2.02 16 20 N -0.80 -39.44 10.95 21.83 0.24 -39.20 16 21 Si 0.99 34.87 29.59 68.60 2.03 36.90 16 22 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 24 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 25 C -0.26 -12.63 9.80 22.73 0.22 -12.41 16 26 C 0.00 -0.07 9.49 22.22 0.21 0.14 16 27 C 0.12 3.22 5.51 86.73 0.48 3.70 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.74 6.47 -2.38 -0.02 0.73 16 31 H 0.04 0.53 8.12 -2.39 -0.02 0.51 16 32 H 0.08 1.11 6.94 -2.38 -0.02 1.10 16 33 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 1.22 6.30 -2.39 -0.02 1.20 16 35 H 0.06 1.21 6.64 -2.38 -0.02 1.20 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.11 1.45 7.90 -2.39 -0.02 1.43 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 5.09 7.60 -2.91 -0.02 5.06 16 41 H 0.11 5.96 6.16 -2.91 -0.02 5.94 16 42 H 0.30 13.05 8.30 -92.70 -0.77 12.28 16 43 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 44 H 0.12 5.04 7.60 -2.91 -0.02 5.02 16 45 H 0.07 1.87 7.31 -2.39 -0.02 1.86 16 46 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -65.54 378.74 -2.13 -67.67 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.97 Total: 32.04 kcal Atomic # 6 Polarization: -72.67 SS G_CDS: 5.24 Total: -67.43 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -5.73 Total: -87.04 kcal Atomic # 8 Polarization: -86.72 SS G_CDS: -4.31 Total: -91.03 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 109.22 SS G_CDS: -0.34 Total: 108.89 kcal Total: -65.54 -2.13 -67.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413489806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.600 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds