Wall clock time and date at job start Tue Mar 31 2020 21:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46581 * 2 1 4 4 N 1.46502 * 109.47045 * 119.99256 * 2 1 3 5 5 C 1.34768 * 120.00289 * 275.27958 * 4 2 1 6 6 O 1.21288 * 119.99941 * 359.72659 * 5 4 2 7 7 C 1.50697 * 120.00052 * 179.72222 * 5 4 2 8 8 N 1.46499 * 109.47315 * 180.02562 * 7 5 4 9 9 C 1.34598 * 126.44044 * 125.00114 * 8 7 5 10 10 N 1.31074 * 106.67827 * 180.02562 * 9 8 7 11 11 N 1.28834 * 107.99434 * 0.02562 * 10 9 8 12 12 N 1.28744 * 109.39726 * 359.73013 * 11 10 9 13 13 C 1.50699 * 109.47364 * 239.99781 * 2 1 3 14 14 O 1.21274 * 119.99862 * 252.83066 * 13 2 1 15 15 N 1.34772 * 119.99854 * 72.83816 * 13 2 1 16 16 C 1.47430 * 125.64630 * 184.48244 * 15 13 2 17 17 C 1.54913 * 104.82897 * 204.08736 * 16 15 13 18 18 C 1.55158 * 101.58355 * 322.98393 * 17 16 15 19 19 O 1.42899 * 110.72434 * 277.14384 * 18 17 16 20 20 C 1.50695 * 110.71995 * 154.04176 * 18 17 16 21 21 H 1.07996 * 120.00380 * 245.78327 * 20 18 17 22 22 C 1.37884 * 119.99812 * 65.78655 * 20 18 17 23 23 N 1.31509 * 119.99798 * 356.60180 * 22 20 18 24 24 Si 1.86796 * 120.00028 * 176.60880 * 22 20 18 25 25 H 1.48504 * 109.47312 * 94.43144 * 24 22 20 26 26 H 1.48502 * 109.47290 * 214.43259 * 24 22 20 27 27 H 1.48499 * 109.47237 * 334.43244 * 24 22 20 28 28 C 1.47025 * 125.65058 * 4.16255 * 15 13 2 29 29 H 1.08996 * 109.47299 * 305.89949 * 1 2 3 30 30 H 1.09005 * 109.46499 * 65.89889 * 1 2 3 31 31 H 1.09000 * 109.46496 * 185.89109 * 1 2 3 32 32 H 0.97001 * 119.99444 * 95.00449 * 4 2 1 33 33 H 1.08994 * 109.47395 * 300.00167 * 7 5 4 34 34 H 1.09001 * 109.46829 * 60.00731 * 7 5 4 35 35 H 1.07993 * 126.65937 * 359.96708 * 9 8 7 36 36 H 1.09003 * 110.36634 * 322.91999 * 16 15 13 37 37 H 1.08998 * 110.36770 * 85.14016 * 16 15 13 38 38 H 1.08999 * 111.00843 * 81.06087 * 17 16 15 39 39 H 1.09001 * 111.00411 * 204.91271 * 17 16 15 40 40 H 0.96697 * 113.99620 * 298.54669 * 19 18 17 41 41 H 0.97008 * 120.00176 * 179.97438 * 23 22 20 42 42 H 1.08994 * 109.88470 * 298.39769 * 28 15 13 43 43 H 1.08998 * 109.88172 * 59.56889 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1418 -0.0194 2.3585 6 8 1.8532 1.1573 2.4129 7 6 2.6381 -0.7313 3.5905 8 7 2.6817 0.2087 4.7134 9 6 2.0819 0.0549 5.9085 10 7 2.3734 1.1195 6.6154 11 7 3.1132 1.8872 5.8921 12 7 3.3059 1.3375 4.7440 13 6 2.0324 -0.7104 -1.2304 14 8 2.5269 -1.8136 -1.1342 15 7 1.9324 -0.1197 -2.4376 16 6 2.2952 -0.7344 -3.7276 17 6 2.5959 0.4611 -4.6658 18 6 1.5316 1.4926 -4.2069 19 8 0.2744 1.2358 -4.8359 20 6 1.9924 2.8982 -4.4949 21 1 2.1992 3.5763 -3.6801 22 6 2.1500 3.3186 -5.7986 23 7 1.9629 2.4739 -6.7890 24 14 2.6294 5.0878 -6.1579 25 1 4.1037 5.1800 -6.3109 26 1 1.9727 5.5335 -7.4131 27 1 2.1930 5.9567 -5.0355 28 6 1.4371 1.2420 -2.6870 29 1 -0.3634 0.6026 0.8324 30 1 -0.3632 0.4197 -0.9382 31 1 -0.3632 -1.0223 0.1055 32 1 2.2491 -1.6316 1.1527 33 1 1.9643 -1.5534 3.8314 34 1 3.6382 -1.1233 3.4054 35 1 1.4770 -0.7825 6.2234 36 1 3.1809 -1.3596 -3.6142 37 1 1.4634 -1.3227 -4.1148 38 1 3.6043 0.8415 -4.5031 39 1 2.4479 0.1853 -5.7099 40 1 0.2962 1.3028 -5.8003 41 1 2.0734 2.7697 -7.7062 42 1 0.4010 1.3254 -2.3593 43 1 2.0558 1.9646 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469406774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:04 Heat of formation + Delta-G solvation = 14.587147 kcal Electronic energy + Delta-G solvation = -29432.224511 eV Core-core repulsion = 25130.125590 eV Total energy + Delta-G solvation = -4302.098921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.42706 -40.64359 -39.50996 -37.59572 -35.88650 -35.14843 -34.49121 -32.72951 -32.28626 -31.80312 -29.88351 -28.97520 -28.37502 -25.45530 -24.75703 -24.10778 -23.66123 -22.09637 -20.88046 -20.03892 -19.48846 -18.30948 -18.13586 -17.39385 -16.95563 -16.62614 -16.23293 -15.98045 -15.88837 -15.43742 -15.05658 -14.81686 -14.31238 -14.18274 -14.01619 -13.75563 -13.23402 -13.07589 -12.78498 -12.63688 -12.38953 -12.25496 -12.05220 -11.94789 -11.69139 -11.48592 -11.43479 -11.39309 -11.37544 -10.94095 -10.71211 -10.67736 -10.55596 -10.31095 -10.24909 -9.91645 -9.52836 -9.42508 -8.78667 -8.34591 -8.26610 -6.38852 -4.46489 0.93955 1.45697 2.00066 2.03621 2.49732 2.67510 3.14396 3.23095 3.26238 3.31987 3.73129 3.87842 4.04226 4.18332 4.25133 4.47165 4.51937 4.87040 4.93575 5.00288 5.11351 5.38476 5.40090 5.44982 5.58399 5.68469 5.71948 5.79097 5.85450 5.91074 5.95230 6.09624 6.26620 6.40985 6.72079 6.79347 6.99113 7.16044 7.22304 7.63276 7.64331 7.79713 7.88922 8.22053 8.36218 8.55036 9.19676 9.28139 10.68930 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.002517 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.583485 B =11121.215777 C =12242.666177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 H 0.115 0.885 4 N -0.703 5.703 5 C 0.503 3.497 6 O -0.507 6.507 7 C 0.098 3.902 8 N -0.301 5.301 9 C 0.159 3.841 10 N -0.307 5.307 11 N -0.078 5.078 12 N -0.060 5.060 13 C 0.523 3.477 14 O -0.559 6.559 15 N -0.598 5.598 16 C 0.103 3.897 17 C -0.137 4.137 18 C 0.250 3.750 19 O -0.586 6.586 20 C -0.538 4.538 21 H 0.065 0.935 22 C 0.074 3.926 23 N -0.895 5.895 24 Si 0.903 3.097 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.271 1.271 28 C 0.105 3.895 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.235 0.765 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.385 0.615 41 H 0.269 0.731 42 H 0.069 0.931 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -11.879 15.211 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.022 3.978 3 H 0.133 0.867 4 N -0.358 5.358 5 C 0.285 3.715 6 O -0.381 6.381 7 C -0.028 4.028 8 N -0.103 5.103 9 C -0.139 4.139 10 N -0.154 5.154 11 N -0.072 5.072 12 N -0.047 5.047 13 C 0.310 3.690 14 O -0.439 6.439 15 N -0.329 5.329 16 C -0.018 4.018 17 C -0.176 4.176 18 C 0.209 3.791 19 O -0.395 6.395 20 C -0.576 4.576 21 H 0.083 0.917 22 C -0.129 4.129 23 N -0.534 5.534 24 Si 0.730 3.270 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.017 4.017 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.250 0.750 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.252 0.748 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.237 0.763 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.930 -10.444 16.002 19.131 hybrid contribution 0.122 -0.453 -1.323 1.404 sum -0.808 -10.897 14.678 18.299 Atomic orbital electron populations 1.22134 0.92261 1.03106 1.04317 1.20789 0.96068 0.98135 0.82803 0.86701 1.45590 1.67013 1.14998 1.08188 1.20089 0.79249 0.87751 0.84397 1.90884 1.48022 1.14874 1.84306 1.21963 1.07435 0.90137 0.83272 1.48164 1.33637 1.15491 1.13028 1.27741 1.01159 1.02004 0.83044 1.74994 1.13011 1.01359 1.26083 1.78702 1.12094 1.20604 0.95804 1.79070 1.14683 0.93803 1.17117 1.19935 0.79311 0.85922 0.83822 1.90632 1.46713 1.20698 1.85887 1.48571 1.61871 1.16690 1.05808 1.22447 0.99494 0.97301 0.82585 1.23366 1.01082 0.94194 0.98950 1.19407 0.81444 0.92822 0.85383 1.86095 1.33676 1.93648 1.26117 1.21487 1.46209 0.97100 0.92807 0.91658 1.24975 0.93733 0.98212 0.95979 1.69646 1.49341 1.34763 0.99673 0.86396 0.78560 0.83945 0.78071 1.20518 1.20915 1.19560 1.22405 0.98720 0.80970 0.99599 0.90920 0.89873 0.91713 0.75018 0.83661 0.84363 0.74841 0.91674 0.91831 0.91369 0.89300 0.76335 0.92075 0.91263 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.41 37.16 0.35 -1.49 16 2 C 0.13 1.66 2.37 -69.08 -0.16 1.50 16 3 H 0.12 1.64 7.22 -51.93 -0.37 1.26 16 4 N -0.70 -6.76 5.02 -54.93 -0.28 -7.04 16 5 C 0.50 4.88 7.81 -10.99 -0.09 4.79 16 6 O -0.51 -7.48 15.37 5.55 0.09 -7.39 16 7 C 0.10 0.47 6.97 -5.20 -0.04 0.43 16 8 N -0.30 -2.65 3.19 -63.74 -0.20 -2.86 16 9 C 0.16 1.16 12.79 -90.39 -1.16 0.00 16 10 N -0.31 -3.70 12.36 29.59 0.37 -3.33 16 11 N -0.08 -1.14 13.43 60.35 0.81 -0.33 16 12 N -0.06 -0.82 12.30 60.35 0.74 -0.08 16 13 C 0.52 8.23 7.14 -10.99 -0.08 8.16 16 14 O -0.56 -9.58 16.08 5.56 0.09 -9.49 16 15 N -0.60 -10.44 3.33 -170.51 -0.57 -11.01 16 16 C 0.10 1.87 6.92 -2.52 -0.02 1.86 16 17 C -0.14 -2.82 5.60 -24.58 -0.14 -2.95 16 18 C 0.25 5.50 0.84 -89.93 -0.08 5.43 16 19 O -0.59 -13.53 13.04 -35.23 -0.46 -13.99 16 20 C -0.54 -13.14 8.22 -34.44 -0.28 -13.43 16 21 H 0.07 1.59 7.55 -52.49 -0.40 1.20 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 23 N -0.90 -22.02 10.70 55.43 0.59 -21.43 16 24 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 C 0.10 1.97 5.49 -3.05 -0.02 1.95 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.04 5.99 -51.93 -0.31 0.73 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.41 3.17 7.71 -40.82 -0.31 2.86 16 33 H 0.15 -0.06 8.08 -51.93 -0.42 -0.48 16 34 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.24 0.25 8.06 -52.49 -0.42 -0.17 16 36 H 0.06 1.14 8.00 -51.93 -0.42 0.72 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 39 H 0.09 1.91 7.66 -51.93 -0.40 1.51 16 40 H 0.39 9.09 7.25 45.56 0.33 9.42 16 41 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 42 H 0.07 1.24 6.15 -51.93 -0.32 0.92 16 43 H 0.08 1.40 7.54 -51.93 -0.39 1.01 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -33.68 364.63 -4.82 -38.50 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.68 Total: 10.43 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.80 Total: 7.97 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 1.47 Total: -46.06 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.28 Total: -30.87 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.68 -4.82 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.087 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds