Wall clock time and date at job start Tue Mar 31 2020 21:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46581 * 2 1 4 4 N 1.46502 * 109.47045 * 119.99256 * 2 1 3 5 5 C 1.34768 * 120.00289 * 275.27958 * 4 2 1 6 6 O 1.21288 * 119.99941 * 359.72659 * 5 4 2 7 7 C 1.50697 * 120.00052 * 179.72222 * 5 4 2 8 8 N 1.46499 * 109.47315 * 180.02562 * 7 5 4 9 9 C 1.34598 * 126.44044 * 125.00114 * 8 7 5 10 10 N 1.31074 * 106.67827 * 180.02562 * 9 8 7 11 11 N 1.28834 * 107.99434 * 0.02562 * 10 9 8 12 12 N 1.28744 * 109.39726 * 359.73013 * 11 10 9 13 13 C 1.50699 * 109.47364 * 239.99781 * 2 1 3 14 14 O 1.21274 * 119.99862 * 252.83066 * 13 2 1 15 15 N 1.34772 * 119.99854 * 72.83816 * 13 2 1 16 16 C 1.47430 * 125.64630 * 184.48244 * 15 13 2 17 17 C 1.54913 * 104.82897 * 204.08736 * 16 15 13 18 18 C 1.55158 * 101.58355 * 322.98393 * 17 16 15 19 19 O 1.42899 * 110.72434 * 277.14384 * 18 17 16 20 20 C 1.50695 * 110.71995 * 154.04176 * 18 17 16 21 21 H 1.07996 * 120.00380 * 245.78327 * 20 18 17 22 22 C 1.37884 * 119.99812 * 65.78655 * 20 18 17 23 23 N 1.31509 * 119.99798 * 356.60180 * 22 20 18 24 24 Si 1.86796 * 120.00028 * 176.60880 * 22 20 18 25 25 H 1.48504 * 109.47312 * 94.43144 * 24 22 20 26 26 H 1.48502 * 109.47290 * 214.43259 * 24 22 20 27 27 H 1.48499 * 109.47237 * 334.43244 * 24 22 20 28 28 C 1.47025 * 125.65058 * 4.16255 * 15 13 2 29 29 H 1.08996 * 109.47299 * 305.89949 * 1 2 3 30 30 H 1.09005 * 109.46499 * 65.89889 * 1 2 3 31 31 H 1.09000 * 109.46496 * 185.89109 * 1 2 3 32 32 H 0.97001 * 119.99444 * 95.00449 * 4 2 1 33 33 H 1.08994 * 109.47395 * 300.00167 * 7 5 4 34 34 H 1.09001 * 109.46829 * 60.00731 * 7 5 4 35 35 H 1.07993 * 126.65937 * 359.96708 * 9 8 7 36 36 H 1.09003 * 110.36634 * 322.91999 * 16 15 13 37 37 H 1.08998 * 110.36770 * 85.14016 * 16 15 13 38 38 H 1.08999 * 111.00843 * 81.06087 * 17 16 15 39 39 H 1.09001 * 111.00411 * 204.91271 * 17 16 15 40 40 H 0.96697 * 113.99620 * 298.54669 * 19 18 17 41 41 H 0.97008 * 120.00176 * 179.97438 * 23 22 20 42 42 H 1.08994 * 109.88470 * 298.39769 * 28 15 13 43 43 H 1.08998 * 109.88172 * 59.56889 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1418 -0.0194 2.3585 6 8 1.8532 1.1573 2.4129 7 6 2.6381 -0.7313 3.5905 8 7 2.6817 0.2087 4.7134 9 6 2.0819 0.0549 5.9085 10 7 2.3734 1.1195 6.6154 11 7 3.1132 1.8872 5.8921 12 7 3.3059 1.3375 4.7440 13 6 2.0324 -0.7104 -1.2304 14 8 2.5269 -1.8136 -1.1342 15 7 1.9324 -0.1197 -2.4376 16 6 2.2952 -0.7344 -3.7276 17 6 2.5959 0.4611 -4.6658 18 6 1.5316 1.4926 -4.2069 19 8 0.2744 1.2358 -4.8359 20 6 1.9924 2.8982 -4.4949 21 1 2.1992 3.5763 -3.6801 22 6 2.1500 3.3186 -5.7986 23 7 1.9629 2.4739 -6.7890 24 14 2.6294 5.0878 -6.1579 25 1 4.1037 5.1800 -6.3109 26 1 1.9727 5.5335 -7.4131 27 1 2.1930 5.9567 -5.0355 28 6 1.4371 1.2420 -2.6870 29 1 -0.3634 0.6026 0.8324 30 1 -0.3632 0.4197 -0.9382 31 1 -0.3632 -1.0223 0.1055 32 1 2.2491 -1.6316 1.1527 33 1 1.9643 -1.5534 3.8314 34 1 3.6382 -1.1233 3.4054 35 1 1.4770 -0.7825 6.2234 36 1 3.1809 -1.3596 -3.6142 37 1 1.4634 -1.3227 -4.1148 38 1 3.6043 0.8415 -4.5031 39 1 2.4479 0.1853 -5.7099 40 1 0.2962 1.3028 -5.8003 41 1 2.0734 2.7697 -7.7062 42 1 0.4010 1.3254 -2.3593 43 1 2.0558 1.9646 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469406774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:03 Heat of formation + Delta-G solvation = -13.313463 kcal Electronic energy + Delta-G solvation = -29433.434372 eV Core-core repulsion = 25130.125590 eV Total energy + Delta-G solvation = -4303.308782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.15557 -41.71168 -40.64876 -39.09730 -36.65101 -36.14483 -36.05432 -34.16502 -33.48759 -32.82906 -31.21981 -30.11484 -29.57825 -27.08070 -25.94226 -24.86434 -24.53481 -23.33333 -21.82071 -21.64740 -20.64535 -19.40740 -18.99345 -18.76290 -17.97623 -17.64783 -17.13374 -17.02841 -16.90519 -16.75294 -16.41276 -16.12611 -15.71824 -15.51938 -14.97341 -14.81307 -14.50587 -14.18522 -14.00999 -13.73092 -13.56619 -13.48263 -13.28430 -13.14382 -13.13387 -13.02344 -12.76338 -12.64941 -12.41256 -12.26735 -12.20994 -12.12996 -12.01290 -11.49979 -11.33894 -11.11661 -11.01343 -10.64908 -10.41074 -10.13281 -9.71111 -8.25621 -6.38531 0.27220 0.93734 1.27323 1.27554 1.40495 1.40914 1.45562 1.53471 1.64896 2.16365 2.38812 3.00211 3.19874 3.25154 3.49789 3.56050 3.78229 3.93721 3.96965 4.03274 4.03816 4.07237 4.15970 4.34148 4.40004 4.44522 4.60321 4.66115 4.69198 4.72823 4.84380 5.05547 5.10300 5.15865 5.19055 5.22909 5.42235 5.49661 5.76339 6.04008 6.27354 6.41831 6.65781 6.88094 6.97931 7.31903 7.39670 7.59326 8.80503 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.002517 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.583485 B =11121.215777 C =12242.666177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.097 0.903 4 N -0.693 5.693 5 C 0.502 3.498 6 O -0.563 6.563 7 C 0.100 3.900 8 N -0.300 5.300 9 C 0.187 3.813 10 N -0.348 5.348 11 N -0.120 5.120 12 N -0.100 5.100 13 C 0.526 3.474 14 O -0.568 6.568 15 N -0.604 5.604 16 C 0.112 3.888 17 C -0.128 4.128 18 C 0.235 3.765 19 O -0.590 6.590 20 C -0.558 4.558 21 H 0.058 0.942 22 C 0.037 3.963 23 N -0.908 5.908 24 Si 0.955 3.045 25 H -0.278 1.278 26 H -0.281 1.281 27 H -0.274 1.274 28 C 0.117 3.883 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.425 0.575 33 H 0.211 0.789 34 H 0.168 0.832 35 H 0.299 0.701 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.380 0.620 41 H 0.271 0.729 42 H 0.077 0.923 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -14.241 16.653 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 H 0.115 0.885 4 N -0.349 5.349 5 C 0.287 3.713 6 O -0.441 6.441 7 C -0.023 4.023 8 N -0.102 5.102 9 C -0.110 4.110 10 N -0.196 5.196 11 N -0.114 5.114 12 N -0.087 5.087 13 C 0.315 3.685 14 O -0.449 6.449 15 N -0.335 5.335 16 C -0.010 4.010 17 C -0.167 4.167 18 C 0.195 3.805 19 O -0.399 6.399 20 C -0.596 4.596 21 H 0.076 0.924 22 C -0.165 4.165 23 N -0.547 5.547 24 Si 0.781 3.219 25 H -0.204 1.204 26 H -0.206 1.206 27 H -0.199 1.199 28 C -0.006 4.006 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.228 0.772 34 H 0.185 0.815 35 H 0.314 0.686 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.415 -12.856 17.453 21.723 hybrid contribution 0.252 0.177 -1.793 1.820 sum -1.163 -12.678 15.660 20.182 Atomic orbital electron populations 1.22058 0.91072 1.04095 1.03703 1.20576 0.96865 0.97100 0.82722 0.88471 1.45487 1.66712 1.15393 1.07283 1.20928 0.77802 0.87181 0.85402 1.90880 1.50452 1.17516 1.85215 1.22492 1.10507 0.89575 0.79771 1.48423 1.32747 1.14699 1.14359 1.28838 0.98968 1.01682 0.81549 1.74879 1.14121 1.03095 1.27461 1.78662 1.13796 1.22283 0.96652 1.78974 1.16477 0.96021 1.17209 1.20385 0.78489 0.85752 0.83886 1.90624 1.46998 1.21199 1.86044 1.48552 1.62520 1.16168 1.06290 1.22289 1.00004 0.96220 0.82510 1.23137 0.99845 0.94901 0.98800 1.19581 0.81362 0.92278 0.87318 1.86087 1.34404 1.93628 1.25750 1.21762 1.46607 0.98390 0.92882 0.92362 1.25560 0.93904 1.01005 0.96008 1.69711 1.49525 1.35681 0.99764 0.85597 0.78125 0.80539 0.77651 1.20431 1.20633 1.19856 1.22156 0.99317 0.81776 0.97305 0.90650 0.91177 0.90019 0.73507 0.77189 0.81475 0.68640 0.90780 0.91462 0.92662 0.90661 0.76928 0.91987 0.90485 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.41 71.98 0.68 -2.54 16 2 C 0.14 3.29 2.37 44.25 0.10 3.39 16 3 H 0.10 2.76 7.22 -2.39 -0.02 2.74 16 4 N -0.69 -11.46 5.02 -446.09 -2.24 -13.70 16 5 C 0.50 8.45 7.81 87.66 0.68 9.14 16 6 O -0.56 -16.23 15.37 -3.05 -0.05 -16.28 16 7 C 0.10 0.50 6.97 85.63 0.60 1.09 16 8 N -0.30 -4.42 3.19 -355.58 -1.13 -5.56 16 9 C 0.19 2.06 12.79 180.27 2.31 4.37 16 10 N -0.35 -8.00 12.36 -60.30 -0.75 -8.74 16 11 N -0.12 -3.55 13.43 37.01 0.50 -3.05 16 12 N -0.10 -2.66 12.30 37.02 0.46 -2.20 16 13 C 0.53 15.74 7.14 87.66 0.63 16.37 16 14 O -0.57 -18.15 16.08 -3.01 -0.05 -18.20 16 15 N -0.60 -20.57 3.33 -811.76 -2.70 -23.27 16 16 C 0.11 3.97 6.92 86.86 0.60 4.57 16 17 C -0.13 -5.31 5.60 31.99 0.18 -5.13 16 18 C 0.23 10.44 0.84 -10.35 -0.01 10.44 16 19 O -0.59 -27.47 13.04 -148.98 -1.94 -29.42 16 20 C -0.56 -27.64 8.22 25.60 0.21 -27.43 16 21 H 0.06 2.89 7.55 -2.91 -0.02 2.87 16 22 C 0.04 1.80 5.29 84.66 0.45 2.25 16 23 N -0.91 -45.01 10.70 21.45 0.23 -44.78 16 24 Si 0.95 40.30 29.54 68.60 2.03 42.32 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 C 0.12 4.38 5.49 86.73 0.48 4.85 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.68 5.99 -2.38 -0.01 1.67 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.43 4.95 7.71 -92.71 -0.72 4.23 16 33 H 0.21 -1.71 8.08 -2.39 -0.02 -1.73 16 34 H 0.17 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.30 -1.27 8.06 -2.91 -0.02 -1.29 16 36 H 0.07 2.50 8.00 -2.39 -0.02 2.48 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 2.39 8.04 -2.39 -0.02 2.37 16 39 H 0.07 3.30 7.66 -2.39 -0.02 3.28 16 40 H 0.38 18.25 7.25 -74.06 -0.54 17.71 16 41 H 0.27 12.87 8.31 -92.70 -0.77 12.10 16 42 H 0.08 2.75 6.15 -2.39 -0.01 2.73 16 43 H 0.08 2.81 7.54 -2.39 -0.02 2.79 16 Total: -1.00 -78.10 364.63 1.09 -77.01 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.17 Total: 24.49 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.90 Total: 21.38 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -5.63 Total: -101.31 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -2.04 Total: -63.90 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -78.10 1.09 -77.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469406774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.699 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds