Wall clock time and date at job start Tue Mar 31 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35793 * 117.00089 * 2 1 4 4 C 1.38022 * 123.46752 * 359.70670 * 3 2 1 5 5 C 1.33614 * 115.08396 * 179.83500 * 4 3 2 6 6 S 1.70577 * 111.14449 * 0.42173 * 5 4 3 7 7 C 1.37261 * 123.47196 * 179.97438 * 3 2 1 8 8 C 1.41724 * 125.48001 * 359.97438 * 7 3 2 9 9 O 1.21775 * 119.99365 * 39.29961 * 8 7 3 10 10 N 1.34769 * 120.00720 * 219.29872 * 8 7 3 11 11 C 1.46926 * 120.62754 * 2.31439 * 10 8 7 12 12 C 1.53621 * 108.54275 * 126.36764 * 11 10 8 13 13 C 1.53042 * 109.24107 * 54.85697 * 12 11 10 14 14 C 1.53036 * 109.53775 * 298.51129 * 13 12 11 15 15 C 1.46923 * 120.63681 * 182.59471 * 10 8 7 16 16 H 1.09000 * 109.58453 * 113.79253 * 15 10 8 17 17 C 1.53008 * 109.58191 * 353.37366 * 15 10 8 18 18 H 1.09003 * 109.47040 * 47.78461 * 17 15 10 19 19 C 1.52998 * 109.46956 * 167.78069 * 17 15 10 20 20 N 1.46496 * 109.46959 * 287.78379 * 17 15 10 21 21 C 1.36946 * 119.99377 * 155.00148 * 20 17 15 22 22 H 1.07996 * 120.00087 * 0.02562 * 21 20 17 23 23 C 1.38815 * 119.99368 * 180.02562 * 21 20 17 24 24 N 1.31622 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99699 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47596 * 59.99842 * 25 23 21 27 27 H 1.48503 * 109.47095 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47286 * 299.99754 * 25 23 21 29 29 H 1.09003 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47551 * 300.00116 * 1 2 3 31 31 H 1.09003 * 109.47472 * 59.99870 * 1 2 3 32 32 H 1.08009 * 122.45801 * 0.03284 * 4 3 2 33 33 H 1.08005 * 124.42490 * 180.18332 * 5 4 3 34 34 H 1.08998 * 109.59074 * 246.19827 * 11 10 8 35 35 H 1.09002 * 109.59065 * 6.62870 * 11 10 8 36 36 H 1.09003 * 109.63790 * 294.86387 * 12 11 10 37 37 H 1.09002 * 109.46416 * 174.74132 * 12 11 10 38 38 H 1.09010 * 109.46043 * 178.48967 * 13 12 11 39 39 H 1.09003 * 109.45907 * 58.53228 * 13 12 11 40 40 H 1.09001 * 109.49979 * 301.40720 * 14 13 12 41 41 H 1.08999 * 109.52330 * 181.33042 * 14 13 12 42 42 H 1.09010 * 109.46989 * 53.95727 * 19 17 15 43 43 H 1.08994 * 109.47243 * 173.95046 * 19 17 15 44 44 H 1.09001 * 109.47533 * 293.95522 * 19 17 15 45 45 H 0.96989 * 120.00258 * 334.99860 * 20 17 15 46 46 H 0.97000 * 119.99894 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0059 5 6 2.1388 3.5002 -0.0014 6 16 3.7922 3.0806 -0.0011 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0016 9 8 4.1570 -0.6882 -0.6658 10 7 5.4786 0.4135 0.7412 11 6 5.7098 1.5898 1.5908 12 6 6.0031 1.1099 3.0203 13 6 7.1682 0.1180 2.9903 14 6 6.7837 -1.0976 2.1438 15 6 6.4966 -0.6453 0.7087 16 1 7.4107 -0.2597 0.2573 17 6 5.9780 -1.8304 -0.1085 18 1 5.5609 -1.4688 -1.0484 19 6 7.1311 -2.7930 -0.3992 20 7 4.9380 -2.5292 0.6506 21 6 3.9865 -3.2625 -0.0069 22 1 4.0031 -3.3261 -1.0849 23 6 3.0007 -3.9242 0.7123 24 7 2.9808 -3.8472 2.0261 25 14 1.7033 -4.9251 -0.1843 26 1 2.3617 -6.0028 -0.9656 27 1 0.7731 -5.5284 0.8037 28 1 0.9437 -4.0405 -1.1040 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2865 2.4660 -0.0104 33 1 1.7660 4.5138 -0.0021 34 1 6.5611 2.1540 1.2100 35 1 4.8211 2.2209 1.5909 36 1 5.1197 0.6211 3.4312 37 1 6.2687 1.9643 3.6429 38 1 7.3969 -0.2045 4.0061 39 1 8.0444 0.6000 2.5566 40 1 5.8929 -1.5657 2.5629 41 1 7.6047 -1.8146 2.1420 42 1 7.6170 -3.0710 0.5362 43 1 6.7436 -3.6874 -0.8869 44 1 7.8543 -2.3066 -1.0537 45 1 4.9233 -2.4724 1.6187 46 1 2.2917 -4.3092 2.5287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479834068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:00 Heat of formation + Delta-G solvation = 28.363196 kcal Electronic energy + Delta-G solvation = -29732.644170 eV Core-core repulsion = 25945.143086 eV Total energy + Delta-G solvation = -3787.501083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.28213 -39.31194 -36.71293 -35.73230 -35.04949 -32.39272 -32.00635 -29.89238 -29.42586 -27.93266 -26.87824 -25.17716 -24.07917 -23.71438 -22.99404 -21.14064 -20.33995 -19.23044 -19.15472 -17.41521 -16.84691 -16.48044 -15.87620 -15.54419 -15.20068 -14.72867 -14.58032 -14.42032 -14.11025 -13.82545 -13.70454 -13.42177 -13.13421 -13.03899 -12.73904 -12.42934 -12.26368 -11.98545 -11.88776 -11.71363 -11.39591 -11.25587 -11.00214 -10.95010 -10.86876 -10.62667 -10.55385 -10.50480 -10.43235 -10.22190 -10.00499 -9.68815 -9.19127 -8.66558 -8.46289 -8.05804 -7.82561 -7.68708 -6.45359 -5.36305 -2.56976 0.76309 1.54496 1.89614 2.62614 3.46667 3.65021 3.66980 3.70922 3.76790 4.06202 4.71969 4.93454 4.99637 5.08423 5.16013 5.22616 5.27260 5.38717 5.41941 5.51302 5.60679 5.63085 5.74149 5.79760 5.83091 5.88133 5.90674 5.96637 6.02246 6.13177 6.23397 6.29462 6.33455 6.41081 6.42899 6.59467 6.66317 6.75815 7.02532 7.18083 7.23707 7.59307 7.64905 8.11622 8.14029 8.83168 9.11306 9.94436 10.52940 10.88760 11.88562 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009275 B = 0.006918 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.061895 B = 4046.352813 C = 6146.287686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.258 6.258 3 C 0.174 3.826 4 C -0.204 4.204 5 C -0.224 4.224 6 S 0.212 5.788 7 C -0.303 4.303 8 C 0.581 3.419 9 O -0.445 6.445 10 N -0.608 5.608 11 C 0.099 3.901 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.135 4.135 15 C 0.150 3.850 16 H 0.061 0.939 17 C 0.152 3.848 18 H 0.102 0.898 19 C -0.170 4.170 20 N -0.704 5.704 21 C -0.172 4.172 22 H 0.063 0.937 23 C -0.028 4.028 24 N -0.949 5.949 25 Si 0.895 3.105 26 H -0.293 1.293 27 H -0.298 1.298 28 H -0.291 1.291 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.030 0.970 45 H 0.378 0.622 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 18.953 -0.427 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.169 6.169 3 C 0.115 3.885 4 C -0.238 4.238 5 C -0.361 4.361 6 S 0.477 5.523 7 C -0.423 4.423 8 C 0.368 3.632 9 O -0.317 6.317 10 N -0.345 5.345 11 C -0.026 4.026 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.174 4.174 15 C 0.046 3.954 16 H 0.079 0.921 17 C 0.042 3.958 18 H 0.119 0.881 19 C -0.231 4.231 20 N -0.346 5.346 21 C -0.304 4.304 22 H 0.081 0.919 23 C -0.221 4.221 24 N -0.601 5.601 25 Si 0.729 3.271 26 H -0.221 1.221 27 H -0.225 1.225 28 H -0.219 1.219 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.214 0.786 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.099 18.932 -0.957 19.395 hybrid contribution -2.608 -1.046 0.144 2.813 sum 1.492 17.886 -0.813 17.967 Atomic orbital electron populations 1.23107 0.78861 1.04444 1.00325 1.86503 1.20404 1.23238 1.86736 1.18298 0.90457 0.85662 0.94127 1.20064 1.01802 0.91200 1.10744 1.25035 1.00109 1.03233 1.07772 1.82964 1.03202 0.96667 1.69473 1.22929 0.95915 0.97530 1.25944 1.15591 0.80588 0.85520 0.81513 1.90983 1.72520 1.27418 1.40776 1.47774 1.20432 1.20935 1.45334 1.22035 1.01447 0.88202 0.90871 1.21949 0.99748 0.99200 0.96116 1.21501 0.97318 0.96475 1.00039 1.21999 1.02753 0.97143 0.95457 1.21578 0.89243 0.88352 0.96204 0.92094 1.21123 0.88408 0.88598 0.97656 0.88089 1.22615 0.99197 1.01499 0.99747 1.42420 1.29548 1.57451 1.05145 1.19066 1.02818 1.17656 0.90857 0.91896 1.24498 0.99524 1.02748 0.95313 1.69635 1.36630 1.49601 1.04264 0.86393 0.82489 0.80087 0.78146 1.22104 1.22453 1.21893 0.87939 0.93049 0.93123 0.83807 0.81576 0.91987 0.89764 0.91160 0.91529 0.92172 0.92498 0.89839 0.91194 0.94198 0.92606 0.95071 0.78570 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.94 101.05 1.00 1.43 16 2 O -0.26 -5.36 10.00 -22.19 -0.22 -5.58 16 3 C 0.17 3.09 6.68 -40.02 -0.27 2.82 16 4 C -0.20 -2.68 9.17 -41.28 -0.38 -3.06 16 5 C -0.22 -2.43 10.90 29.11 0.32 -2.12 16 6 S 0.21 2.51 19.57 -107.50 -2.10 0.41 16 7 C -0.30 -5.36 5.37 -38.61 -0.21 -5.57 16 8 C 0.58 11.98 7.06 -14.93 -0.11 11.88 16 9 O -0.44 -11.08 9.95 2.02 0.02 -11.06 16 10 N -0.61 -10.71 2.97 -168.30 -0.50 -11.21 16 11 C 0.10 1.34 5.63 -3.49 -0.02 1.32 16 12 C -0.13 -1.71 6.10 -26.39 -0.16 -1.88 16 13 C -0.12 -1.53 5.88 -26.69 -0.16 -1.69 16 14 C -0.13 -2.28 4.90 -26.62 -0.13 -2.41 16 15 C 0.15 2.68 2.73 -67.60 -0.18 2.49 16 16 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 17 C 0.15 3.32 1.88 -67.93 -0.13 3.19 16 18 H 0.10 2.45 5.27 -55.33 -0.29 2.16 16 19 C -0.17 -3.34 9.42 37.16 0.35 -2.99 16 20 N -0.70 -18.56 4.04 -53.42 -0.22 -18.78 16 21 C -0.17 -5.12 8.39 -15.05 -0.13 -5.24 16 22 H 0.06 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.03 -0.87 5.50 -17.43 -0.10 -0.96 16 24 N -0.95 -30.26 13.06 55.49 0.72 -29.54 16 25 Si 0.90 24.36 29.55 -169.99 -5.02 19.34 16 26 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 28 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 29 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.05 0.65 7.89 -51.93 -0.41 0.24 16 31 H 0.05 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.14 1.54 6.99 -52.48 -0.37 1.17 16 33 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.09 4.11 -28.51 -0.12 0.97 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.75 5.83 -51.93 -0.30 1.44 16 41 H 0.07 1.13 7.00 -51.93 -0.36 0.77 16 42 H 0.04 0.75 6.81 -51.92 -0.35 0.39 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.38 10.56 5.27 -40.82 -0.22 10.35 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.36 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -35.96 364.46 -8.72 -44.68 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.60 Total: 9.05 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.29 Total: -2.79 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.01 Total: -59.53 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.20 Total: -16.64 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.02 Total: 19.34 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.10 Total: 0.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.96 -8.72 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479834068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.041 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds