Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35793 * 117.00089 * 2 1 4 4 C 1.38022 * 123.46752 * 359.70670 * 3 2 1 5 5 C 1.33614 * 115.08396 * 179.83500 * 4 3 2 6 6 S 1.70577 * 111.14449 * 0.42173 * 5 4 3 7 7 C 1.37261 * 123.47196 * 179.97438 * 3 2 1 8 8 C 1.41724 * 125.48001 * 359.97438 * 7 3 2 9 9 O 1.21775 * 119.99365 * 39.29961 * 8 7 3 10 10 N 1.34769 * 120.00720 * 219.29872 * 8 7 3 11 11 C 1.46926 * 120.62754 * 2.31439 * 10 8 7 12 12 C 1.53621 * 108.54275 * 126.36764 * 11 10 8 13 13 C 1.53042 * 109.24107 * 54.85697 * 12 11 10 14 14 C 1.53036 * 109.53775 * 298.51129 * 13 12 11 15 15 C 1.46923 * 120.63681 * 182.59471 * 10 8 7 16 16 H 1.09000 * 109.58453 * 113.79253 * 15 10 8 17 17 C 1.53008 * 109.58191 * 353.37366 * 15 10 8 18 18 H 1.09003 * 109.47040 * 47.78461 * 17 15 10 19 19 C 1.52998 * 109.46956 * 167.78069 * 17 15 10 20 20 N 1.46496 * 109.46959 * 287.78379 * 17 15 10 21 21 C 1.36946 * 119.99377 * 155.00148 * 20 17 15 22 22 H 1.07996 * 120.00087 * 0.02562 * 21 20 17 23 23 C 1.38815 * 119.99368 * 180.02562 * 21 20 17 24 24 N 1.31622 * 120.00177 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99699 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47596 * 59.99842 * 25 23 21 27 27 H 1.48503 * 109.47095 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47286 * 299.99754 * 25 23 21 29 29 H 1.09003 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47551 * 300.00116 * 1 2 3 31 31 H 1.09003 * 109.47472 * 59.99870 * 1 2 3 32 32 H 1.08009 * 122.45801 * 0.03284 * 4 3 2 33 33 H 1.08005 * 124.42490 * 180.18332 * 5 4 3 34 34 H 1.08998 * 109.59074 * 246.19827 * 11 10 8 35 35 H 1.09002 * 109.59065 * 6.62870 * 11 10 8 36 36 H 1.09003 * 109.63790 * 294.86387 * 12 11 10 37 37 H 1.09002 * 109.46416 * 174.74132 * 12 11 10 38 38 H 1.09010 * 109.46043 * 178.48967 * 13 12 11 39 39 H 1.09003 * 109.45907 * 58.53228 * 13 12 11 40 40 H 1.09001 * 109.49979 * 301.40720 * 14 13 12 41 41 H 1.08999 * 109.52330 * 181.33042 * 14 13 12 42 42 H 1.09010 * 109.46989 * 53.95727 * 19 17 15 43 43 H 1.08994 * 109.47243 * 173.95046 * 19 17 15 44 44 H 1.09001 * 109.47533 * 293.95522 * 19 17 15 45 45 H 0.96989 * 120.00258 * 334.99860 * 20 17 15 46 46 H 0.97000 * 119.99894 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3651 2.4108 -0.0059 5 6 2.1388 3.5002 -0.0014 6 16 3.7922 3.0806 -0.0011 7 6 3.4093 1.3646 0.0005 8 6 4.3567 0.3106 0.0016 9 8 4.1570 -0.6882 -0.6658 10 7 5.4786 0.4135 0.7412 11 6 5.7098 1.5898 1.5908 12 6 6.0031 1.1099 3.0203 13 6 7.1682 0.1180 2.9903 14 6 6.7837 -1.0976 2.1438 15 6 6.4966 -0.6453 0.7087 16 1 7.4107 -0.2597 0.2573 17 6 5.9780 -1.8304 -0.1085 18 1 5.5609 -1.4688 -1.0484 19 6 7.1311 -2.7930 -0.3992 20 7 4.9380 -2.5292 0.6506 21 6 3.9865 -3.2625 -0.0069 22 1 4.0031 -3.3261 -1.0849 23 6 3.0007 -3.9242 0.7123 24 7 2.9808 -3.8472 2.0261 25 14 1.7033 -4.9251 -0.1843 26 1 2.3617 -6.0028 -0.9656 27 1 0.7731 -5.5284 0.8037 28 1 0.9437 -4.0405 -1.1040 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2865 2.4660 -0.0104 33 1 1.7660 4.5138 -0.0021 34 1 6.5611 2.1540 1.2100 35 1 4.8211 2.2209 1.5909 36 1 5.1197 0.6211 3.4312 37 1 6.2687 1.9643 3.6429 38 1 7.3969 -0.2045 4.0061 39 1 8.0444 0.6000 2.5566 40 1 5.8929 -1.5657 2.5629 41 1 7.6047 -1.8146 2.1420 42 1 7.6170 -3.0710 0.5362 43 1 6.7436 -3.6874 -0.8869 44 1 7.8543 -2.3066 -1.0537 45 1 4.9233 -2.4724 1.6187 46 1 2.2917 -4.3092 2.5287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479834068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = 2.846864 kcal Electronic energy + Delta-G solvation = -29733.750641 eV Core-core repulsion = 25945.143086 eV Total energy + Delta-G solvation = -3788.607554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65588 -40.59147 -38.12901 -37.03570 -36.65540 -34.12338 -33.64084 -31.34826 -30.84531 -29.72602 -28.11297 -26.43137 -25.72330 -25.18199 -24.53565 -22.40939 -21.75751 -20.62683 -20.33746 -19.08145 -18.61879 -17.73058 -17.24550 -16.82895 -16.62296 -16.27944 -15.98020 -15.77432 -15.68340 -15.46356 -15.04213 -14.74746 -14.46972 -14.40426 -14.03483 -13.87061 -13.75158 -13.43101 -13.34550 -13.11532 -12.99672 -12.77630 -12.63607 -12.51012 -12.32141 -12.16652 -12.14525 -11.95100 -11.83914 -11.67471 -11.52513 -11.28626 -11.24651 -10.80558 -9.68920 -9.54700 -9.23963 -8.87261 -8.59607 -7.73076 -4.90941 -0.31209 0.48282 0.92288 1.39122 1.43907 1.49665 1.50872 2.12035 2.51329 2.68297 2.75001 3.60604 3.71834 3.85902 3.95706 4.03636 4.11181 4.17166 4.23773 4.29125 4.31681 4.36192 4.41894 4.43774 4.60291 4.63287 4.70298 4.71506 4.86942 4.90820 4.93936 4.97729 5.03278 5.11041 5.16734 5.25080 5.29350 5.32722 5.53242 5.57403 5.62788 5.69956 6.05949 6.40522 6.50721 6.74793 7.54938 7.67817 8.37207 8.60916 9.52103 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009275 B = 0.006918 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.061895 B = 4046.352813 C = 6146.287686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.317 6.317 3 C 0.153 3.847 4 C -0.223 4.223 5 C -0.197 4.197 6 S 0.292 5.708 7 C -0.364 4.364 8 C 0.571 3.429 9 O -0.511 6.511 10 N -0.609 5.609 11 C 0.092 3.908 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.152 3.848 16 H 0.095 0.905 17 C 0.145 3.855 18 H 0.077 0.923 19 C -0.159 4.159 20 N -0.706 5.706 21 C -0.157 4.157 22 H 0.046 0.954 23 C -0.091 4.091 24 N -0.980 5.980 25 Si 0.951 3.049 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.293 1.293 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.214 0.786 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.368 0.632 46 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 23.195 -0.245 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.230 6.230 3 C 0.093 3.907 4 C -0.255 4.255 5 C -0.335 4.335 6 S 0.557 5.443 7 C -0.483 4.483 8 C 0.360 3.640 9 O -0.388 6.388 10 N -0.344 5.344 11 C -0.031 4.031 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.049 3.951 16 H 0.113 0.887 17 C 0.037 3.963 18 H 0.094 0.906 19 C -0.220 4.220 20 N -0.346 5.346 21 C -0.291 4.291 22 H 0.064 0.936 23 C -0.280 4.280 24 N -0.635 5.635 25 Si 0.784 3.216 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.220 1.220 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.184 0.816 33 H 0.231 0.769 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.203 0.797 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.600 23.222 -0.780 23.900 hybrid contribution -2.984 -2.189 0.036 3.701 sum 2.616 21.033 -0.744 21.208 Atomic orbital electron populations 1.23257 0.76966 1.04129 1.02732 1.86389 1.22935 1.26235 1.87400 1.18880 0.91053 0.86137 0.94610 1.20142 1.03122 0.89876 1.12380 1.25638 0.99526 1.04653 1.03642 1.82465 1.03170 0.90993 1.67698 1.23061 0.95657 1.00925 1.28641 1.16131 0.81328 0.85677 0.80860 1.90933 1.74242 1.30140 1.43520 1.47909 1.19555 1.21891 1.45058 1.22391 1.03188 0.86968 0.90511 1.21954 0.98215 1.00296 0.96258 1.21486 0.98370 0.94771 0.99957 1.21907 1.00647 0.98964 0.95266 1.21518 0.90178 0.87202 0.96248 0.88699 1.21205 0.87790 0.90295 0.97053 0.90562 1.22436 0.98956 0.99999 1.00560 1.42491 1.30004 1.57391 1.04732 1.19158 1.03166 1.16628 0.90129 0.93556 1.25113 1.01787 1.04986 0.96108 1.69790 1.37292 1.51133 1.05323 0.85475 0.80284 0.78753 0.77073 1.21355 1.22262 1.22035 0.89711 0.90800 0.90414 0.81590 0.76901 0.88241 0.89272 0.94844 0.87473 0.91214 0.89260 0.94836 0.90625 0.93407 0.95484 0.91497 0.79711 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 9.94 113.37 1.13 1.88 16 2 O -0.32 -14.05 10.00 -88.26 -0.88 -14.93 16 3 C 0.15 5.54 6.68 21.99 0.15 5.69 16 4 C -0.22 -5.39 9.17 21.17 0.19 -5.20 16 5 C -0.20 -3.43 10.90 66.77 0.73 -2.70 16 6 S 0.29 5.93 19.57 -56.49 -1.11 4.83 16 7 C -0.36 -12.94 5.37 22.90 0.12 -12.81 16 8 C 0.57 24.44 7.06 85.10 0.60 25.04 16 9 O -0.51 -27.29 9.95 -1.62 -0.02 -27.31 16 10 N -0.61 -21.26 2.97 -804.58 -2.39 -23.65 16 11 C 0.09 2.23 5.63 86.51 0.49 2.72 16 12 C -0.13 -3.03 6.10 30.82 0.19 -2.84 16 13 C -0.11 -2.56 5.88 30.62 0.18 -2.38 16 14 C -0.13 -4.32 4.90 30.67 0.15 -4.17 16 15 C 0.15 5.36 2.73 44.98 0.12 5.48 16 16 H 0.10 2.73 8.09 -2.39 -0.02 2.71 16 17 C 0.14 6.56 1.88 44.99 0.08 6.65 16 18 H 0.08 3.94 5.27 -56.26 -0.30 3.64 16 19 C -0.16 -6.32 9.42 71.98 0.68 -5.65 16 20 N -0.71 -39.56 4.04 -322.93 -1.30 -40.86 16 21 C -0.16 -9.97 8.39 84.03 0.70 -9.27 16 22 H 0.05 3.03 7.83 -2.91 -0.02 3.01 16 23 C -0.09 -5.86 5.50 84.86 0.47 -5.40 16 24 N -0.98 -65.99 13.06 21.65 0.28 -65.70 16 25 Si 0.95 52.85 29.55 68.60 2.03 54.87 16 26 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 27 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 28 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.07 1.90 7.89 -2.38 -0.02 1.88 16 31 H 0.08 1.93 7.87 -2.39 -0.02 1.91 16 32 H 0.17 3.12 6.99 -2.91 -0.02 3.10 16 33 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.06 4.11 -17.27 -0.07 1.99 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 1.47 5.83 -2.39 -0.01 1.45 16 41 H 0.08 2.39 7.00 -2.39 -0.02 2.37 16 42 H 0.05 1.79 6.81 -2.38 -0.02 1.77 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.37 21.99 5.27 -92.72 -0.49 21.51 16 46 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -88.47 364.46 2.77 -85.71 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.17 Total: 30.01 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.98 Total: -2.96 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -3.41 Total: -130.22 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.90 Total: -42.24 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.03 Total: 54.87 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.11 Total: 4.83 kcal Total: -88.47 2.77 -85.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479834068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.553 kcal (2) G-P(sol) polarization free energy of solvation -88.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds