Wall clock time and date at job start Tue Mar 31 2020 20:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35779 * 117.00177 * 2 1 4 4 C 1.38014 * 123.47329 * 0.02562 * 3 2 1 5 5 C 1.33614 * 115.08848 * 179.97438 * 4 3 2 6 6 S 1.70586 * 111.14375 * 359.97438 * 5 4 3 7 7 C 1.37270 * 123.46899 * 179.72730 * 3 2 1 8 8 C 1.41723 * 125.47762 * 0.02562 * 7 3 2 9 9 O 1.21776 * 119.99860 * 304.15841 * 8 7 3 10 10 N 1.34782 * 120.00228 * 124.16029 * 8 7 3 11 11 C 1.46923 * 120.62822 * 3.30292 * 10 8 7 12 12 C 1.53197 * 108.77336 * 233.58825 * 11 10 8 13 13 C 1.53046 * 109.31135 * 305.36131 * 12 11 10 14 14 C 1.53042 * 109.53332 * 61.36830 * 13 12 11 15 15 C 1.46923 * 120.62897 * 183.02603 * 10 8 7 16 16 H 1.09006 * 109.58370 * 246.20030 * 15 10 8 17 17 C 1.53001 * 109.58937 * 6.62303 * 15 10 8 18 18 H 1.08999 * 109.46926 * 44.82928 * 17 15 10 19 19 C 1.52995 * 109.46915 * 164.82678 * 17 15 10 20 20 N 1.46498 * 109.47143 * 284.82264 * 17 15 10 21 21 C 1.36930 * 120.00086 * 167.75671 * 20 17 15 22 22 H 1.08010 * 119.99833 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00560 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99343 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00425 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46897 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46905 * 120.00173 * 25 23 21 28 28 H 1.48493 * 109.47511 * 239.99998 * 25 23 21 29 29 H 1.09002 * 109.47283 * 59.99667 * 1 2 3 30 30 H 1.08999 * 109.47933 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46946 * 300.00043 * 1 2 3 32 32 H 1.08000 * 122.45969 * 359.94282 * 4 3 2 33 33 H 1.07999 * 124.42772 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.58753 * 353.37308 * 11 10 8 35 35 H 1.08994 * 109.58904 * 113.66043 * 11 10 8 36 36 H 1.09003 * 109.49791 * 65.31519 * 12 11 10 37 37 H 1.08998 * 109.49681 * 185.41360 * 12 11 10 38 38 H 1.09004 * 109.45789 * 181.38502 * 13 12 11 39 39 H 1.09000 * 109.45998 * 301.35127 * 13 12 11 40 40 H 1.09006 * 109.50096 * 58.58860 * 14 13 12 41 41 H 1.09002 * 109.49544 * 178.67922 * 14 13 12 42 42 H 1.09004 * 109.47493 * 60.00085 * 19 17 15 43 43 H 1.09007 * 109.47406 * 180.02562 * 19 17 15 44 44 H 1.09001 * 109.47357 * 299.99690 * 19 17 15 45 45 H 0.97000 * 120.00224 * 347.76102 * 20 17 15 46 46 H 0.97003 * 119.99694 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3653 2.4107 0.0005 5 6 2.1390 3.5000 0.0010 6 16 3.7924 3.0803 0.0015 7 6 3.4093 1.3644 0.0055 8 6 4.3566 0.3103 0.0112 9 8 4.3195 -0.5369 0.8852 10 7 5.2986 0.2454 -0.9506 11 6 5.4016 1.2987 -1.9697 12 6 5.3605 0.6488 -3.3563 13 6 6.4508 -0.4215 -3.4462 14 6 6.1918 -1.5051 -2.3970 15 6 6.2458 -0.8768 -0.9962 16 1 7.2534 -0.5129 -0.7945 17 6 5.8551 -1.9208 0.0518 18 1 4.7787 -2.0883 0.0141 19 6 6.5859 -3.2332 -0.2386 20 7 6.2280 -1.4387 1.3840 21 6 5.7584 -2.0785 2.4999 22 1 5.1134 -2.9388 2.3979 23 6 6.1113 -1.6215 3.7622 24 7 6.8968 -0.5728 3.8865 25 14 5.4701 -2.4939 5.2845 26 1 4.6122 -3.6353 4.8764 27 1 6.6148 -2.9971 6.0856 28 1 4.6741 -1.5432 6.1016 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2867 2.4660 0.0000 33 1 1.7663 4.5137 0.0018 34 1 4.5660 1.9908 -1.8656 35 1 6.3405 1.8380 -1.8443 36 1 4.3850 0.1886 -3.5136 37 1 5.5324 1.4081 -4.1192 38 1 6.4397 -0.8685 -4.4403 39 1 7.4237 0.0351 -3.2642 40 1 5.2085 -1.9451 -2.5634 41 1 6.9553 -2.2789 -2.4771 42 1 7.6623 -3.0658 -0.2008 43 1 6.3072 -3.9772 0.5078 44 1 6.3085 -3.5919 -1.2297 45 1 6.8075 -0.6663 1.4757 46 1 7.1431 -0.2531 4.7686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479834071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:09 Heat of formation + Delta-G solvation = 23.489368 kcal Electronic energy + Delta-G solvation = -29288.968347 eV Core-core repulsion = 25501.255919 eV Total energy + Delta-G solvation = -3787.712428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.32253 -39.39386 -36.77155 -35.85132 -35.07202 -32.52918 -32.08999 -29.94757 -29.72925 -27.66622 -27.08090 -25.24544 -24.16411 -24.05666 -22.62335 -21.20425 -20.01630 -19.71807 -19.28746 -17.70781 -16.70464 -16.51270 -15.96302 -15.67817 -15.27401 -14.87409 -14.72097 -14.38504 -14.25905 -13.82839 -13.67638 -13.40706 -13.21096 -13.03805 -12.77330 -12.61272 -12.52141 -12.07961 -11.99066 -11.79477 -11.44870 -11.27373 -11.14414 -11.01695 -10.91330 -10.74014 -10.72738 -10.59104 -10.48519 -10.29378 -10.02408 -9.58908 -9.32643 -8.68748 -8.55524 -8.16942 -7.87477 -7.85129 -6.42184 -5.40113 -2.59649 0.81505 1.51887 1.93021 2.58877 3.44885 3.60348 3.63535 3.68675 3.70949 3.94940 4.70403 4.86846 4.89217 4.99700 5.02503 5.07818 5.13760 5.15510 5.29890 5.42431 5.48926 5.52660 5.58488 5.67208 5.73543 5.85947 5.88551 5.92108 5.96721 6.00631 6.12776 6.18102 6.22038 6.24917 6.27773 6.48035 6.58365 6.58918 6.92955 7.05613 7.17871 7.37194 7.54059 8.05062 8.08683 8.77778 9.09900 9.89344 10.47851 10.83174 11.84660 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.005800 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.023745 B = 4826.316616 C = 6407.995756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.286 6.286 3 C 0.150 3.850 4 C -0.200 4.200 5 C -0.230 4.230 6 S 0.232 5.768 7 C -0.280 4.280 8 C 0.555 3.445 9 O -0.418 6.418 10 N -0.611 5.611 11 C 0.103 3.897 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.127 4.127 15 C 0.150 3.850 16 H 0.066 0.934 17 C 0.178 3.822 18 H 0.064 0.936 19 C -0.168 4.168 20 N -0.693 5.693 21 C -0.179 4.179 22 H 0.063 0.937 23 C -0.028 4.028 24 N -0.944 5.944 25 Si 0.897 3.103 26 H -0.284 1.284 27 H -0.298 1.298 28 H -0.298 1.298 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.143 0.857 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.377 0.623 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 8.631 -17.950 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.198 6.198 3 C 0.092 3.908 4 C -0.234 4.234 5 C -0.368 4.368 6 S 0.498 5.502 7 C -0.401 4.401 8 C 0.340 3.660 9 O -0.286 6.286 10 N -0.349 5.349 11 C -0.021 4.021 12 C -0.170 4.170 13 C -0.156 4.156 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.084 0.916 17 C 0.068 3.932 18 H 0.081 0.919 19 C -0.229 4.229 20 N -0.333 5.333 21 C -0.312 4.312 22 H 0.081 0.919 23 C -0.222 4.222 24 N -0.596 5.596 25 Si 0.730 3.270 26 H -0.210 1.210 27 H -0.226 1.226 28 H -0.226 1.226 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.210 0.790 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.877 8.655 -17.286 20.875 hybrid contribution -1.937 -0.515 0.997 2.238 sum -9.813 8.141 -16.289 20.686 Atomic orbital electron populations 1.23065 0.78658 1.04009 1.00893 1.86203 1.20726 1.24609 1.88288 1.18066 0.90062 0.85240 0.97458 1.19940 1.01564 0.91096 1.10823 1.24946 0.99818 1.03335 1.08656 1.83193 1.02928 0.95984 1.68141 1.22947 0.95715 0.98516 1.22899 1.15725 0.81469 0.86082 0.82731 1.91332 1.67740 1.36918 1.32626 1.47819 1.33695 1.24177 1.29174 1.21791 1.02136 0.90461 0.87742 1.21887 0.99791 0.98618 0.96662 1.21527 0.98654 0.96604 0.98823 1.22098 1.02432 0.97804 0.94296 1.21564 0.91959 0.86804 0.95003 0.91615 1.20491 0.98101 0.89605 0.84981 0.91867 1.22581 1.00599 1.00624 0.99048 1.42240 1.56873 1.35081 0.99110 1.19094 1.20541 1.06833 0.84688 0.91879 1.24544 1.01908 0.98846 0.96865 1.69657 1.41717 1.26990 1.21276 0.86207 0.77756 0.78536 0.84459 1.20993 1.22611 1.22572 0.93048 0.88204 0.92768 0.83921 0.81488 0.90108 0.91876 0.91741 0.91379 0.92182 0.91932 0.91662 0.90595 0.93748 0.92784 0.94449 0.79008 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.94 101.05 1.00 1.33 16 2 O -0.29 -4.81 10.35 -19.05 -0.20 -5.01 16 3 C 0.15 2.44 6.72 -40.02 -0.27 2.17 16 4 C -0.20 -2.50 9.17 -41.28 -0.38 -2.88 16 5 C -0.23 -2.58 10.90 29.11 0.32 -2.26 16 6 S 0.23 3.10 20.61 -107.50 -2.22 0.88 16 7 C -0.28 -4.96 4.91 -38.60 -0.19 -5.15 16 8 C 0.56 11.53 6.90 -14.93 -0.10 11.43 16 9 O -0.42 -10.79 10.32 5.12 0.05 -10.74 16 10 N -0.61 -10.64 2.97 -168.31 -0.50 -11.13 16 11 C 0.10 1.35 5.93 -3.71 -0.02 1.33 16 12 C -0.13 -1.43 6.08 -26.61 -0.16 -1.59 16 13 C -0.12 -1.31 5.88 -26.69 -0.16 -1.47 16 14 C -0.13 -1.76 4.35 -26.39 -0.11 -1.87 16 15 C 0.15 2.66 2.66 -67.38 -0.18 2.48 16 16 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 17 C 0.18 3.89 1.86 -67.93 -0.13 3.76 16 18 H 0.06 1.55 6.12 -51.93 -0.32 1.24 16 19 C -0.17 -3.28 8.54 37.16 0.32 -2.96 16 20 N -0.69 -18.66 3.37 -53.43 -0.18 -18.84 16 21 C -0.18 -5.40 8.41 -15.06 -0.13 -5.52 16 22 H 0.06 1.92 7.83 -52.48 -0.41 1.50 16 23 C -0.03 -0.89 5.50 -17.43 -0.10 -0.98 16 24 N -0.94 -30.64 13.06 55.49 0.72 -29.92 16 25 Si 0.90 24.64 29.55 -169.99 -5.02 19.61 16 26 H -0.28 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 28 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 29 H 0.05 0.44 7.88 -51.93 -0.41 0.03 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 32 H 0.14 1.37 6.99 -52.49 -0.37 1.01 16 33 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.08 1.00 4.65 -45.20 -0.21 0.79 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.99 6.73 -51.93 -0.35 0.64 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 1.15 7.96 -51.92 -0.41 0.74 16 44 H 0.04 0.60 6.45 -51.93 -0.34 0.27 16 45 H 0.38 10.90 7.65 -40.82 -0.31 10.59 16 46 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -36.90 369.04 -8.95 -45.86 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.89 Total: 5.92 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.28 Total: -2.20 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.05 Total: -59.89 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.14 Total: -15.75 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.02 Total: 19.61 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.22 Total: 0.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.90 -8.95 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479834071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.346 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds