Wall clock time and date at job start Tue Mar 31 2020 20:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35779 * 117.00177 * 2 1 4 4 C 1.38014 * 123.47329 * 0.02562 * 3 2 1 5 5 C 1.33614 * 115.08848 * 179.97438 * 4 3 2 6 6 S 1.70586 * 111.14375 * 359.97438 * 5 4 3 7 7 C 1.37270 * 123.46899 * 179.72730 * 3 2 1 8 8 C 1.41723 * 125.47762 * 0.02562 * 7 3 2 9 9 O 1.21776 * 119.99860 * 304.15841 * 8 7 3 10 10 N 1.34782 * 120.00228 * 124.16029 * 8 7 3 11 11 C 1.46923 * 120.62822 * 3.30292 * 10 8 7 12 12 C 1.53197 * 108.77336 * 233.58825 * 11 10 8 13 13 C 1.53046 * 109.31135 * 305.36131 * 12 11 10 14 14 C 1.53042 * 109.53332 * 61.36830 * 13 12 11 15 15 C 1.46923 * 120.62897 * 183.02603 * 10 8 7 16 16 H 1.09006 * 109.58370 * 246.20030 * 15 10 8 17 17 C 1.53001 * 109.58937 * 6.62303 * 15 10 8 18 18 H 1.08999 * 109.46926 * 44.82928 * 17 15 10 19 19 C 1.52995 * 109.46915 * 164.82678 * 17 15 10 20 20 N 1.46498 * 109.47143 * 284.82264 * 17 15 10 21 21 C 1.36930 * 120.00086 * 167.75671 * 20 17 15 22 22 H 1.08010 * 119.99833 * 0.02562 * 21 20 17 23 23 C 1.38811 * 120.00560 * 180.02562 * 21 20 17 24 24 N 1.31618 * 119.99343 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00425 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46897 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46905 * 120.00173 * 25 23 21 28 28 H 1.48493 * 109.47511 * 239.99998 * 25 23 21 29 29 H 1.09002 * 109.47283 * 59.99667 * 1 2 3 30 30 H 1.08999 * 109.47933 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46946 * 300.00043 * 1 2 3 32 32 H 1.08000 * 122.45969 * 359.94282 * 4 3 2 33 33 H 1.07999 * 124.42772 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.58753 * 353.37308 * 11 10 8 35 35 H 1.08994 * 109.58904 * 113.66043 * 11 10 8 36 36 H 1.09003 * 109.49791 * 65.31519 * 12 11 10 37 37 H 1.08998 * 109.49681 * 185.41360 * 12 11 10 38 38 H 1.09004 * 109.45789 * 181.38502 * 13 12 11 39 39 H 1.09000 * 109.45998 * 301.35127 * 13 12 11 40 40 H 1.09006 * 109.50096 * 58.58860 * 14 13 12 41 41 H 1.09002 * 109.49544 * 178.67922 * 14 13 12 42 42 H 1.09004 * 109.47493 * 60.00085 * 19 17 15 43 43 H 1.09007 * 109.47406 * 180.02562 * 19 17 15 44 44 H 1.09001 * 109.47357 * 299.99690 * 19 17 15 45 45 H 0.97000 * 120.00224 * 347.76102 * 20 17 15 46 46 H 0.97003 * 119.99694 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3653 2.4107 0.0005 5 6 2.1390 3.5000 0.0010 6 16 3.7924 3.0803 0.0015 7 6 3.4093 1.3644 0.0055 8 6 4.3566 0.3103 0.0112 9 8 4.3195 -0.5369 0.8852 10 7 5.2986 0.2454 -0.9506 11 6 5.4016 1.2987 -1.9697 12 6 5.3605 0.6488 -3.3563 13 6 6.4508 -0.4215 -3.4462 14 6 6.1918 -1.5051 -2.3970 15 6 6.2458 -0.8768 -0.9962 16 1 7.2534 -0.5129 -0.7945 17 6 5.8551 -1.9208 0.0518 18 1 4.7787 -2.0883 0.0141 19 6 6.5859 -3.2332 -0.2386 20 7 6.2280 -1.4387 1.3840 21 6 5.7584 -2.0785 2.4999 22 1 5.1134 -2.9388 2.3979 23 6 6.1113 -1.6215 3.7622 24 7 6.8968 -0.5728 3.8865 25 14 5.4701 -2.4939 5.2845 26 1 4.6122 -3.6353 4.8764 27 1 6.6148 -2.9971 6.0856 28 1 4.6741 -1.5432 6.1016 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2867 2.4660 0.0000 33 1 1.7663 4.5137 0.0018 34 1 4.5660 1.9908 -1.8656 35 1 6.3405 1.8380 -1.8443 36 1 4.3850 0.1886 -3.5136 37 1 5.5324 1.4081 -4.1192 38 1 6.4397 -0.8685 -4.4403 39 1 7.4237 0.0351 -3.2642 40 1 5.2085 -1.9451 -2.5634 41 1 6.9553 -2.2789 -2.4771 42 1 7.6623 -3.0658 -0.2008 43 1 6.3072 -3.9772 0.5078 44 1 6.3085 -3.5919 -1.2297 45 1 6.8075 -0.6663 1.4757 46 1 7.1431 -0.2531 4.7686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479834071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:08 Heat of formation + Delta-G solvation = -2.251475 kcal Electronic energy + Delta-G solvation = -29290.084554 eV Core-core repulsion = 25501.255919 eV Total energy + Delta-G solvation = -3788.828635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65698 -40.58432 -38.11884 -37.11611 -36.66739 -34.24337 -33.62477 -31.51959 -31.01966 -29.35486 -28.08635 -26.53976 -25.94152 -25.17193 -24.19546 -22.42051 -21.47056 -21.02005 -20.39446 -19.28860 -18.46766 -17.75676 -17.22334 -16.79753 -16.74100 -16.54932 -15.89371 -15.78011 -15.48236 -15.38766 -14.90278 -14.81429 -14.54766 -14.41172 -14.18565 -13.88893 -13.75062 -13.51943 -13.45948 -13.14861 -12.96457 -12.83516 -12.58641 -12.49425 -12.38302 -12.12322 -12.07695 -11.90718 -11.83857 -11.67461 -11.58331 -11.37703 -11.18894 -10.80020 -10.03649 -9.49149 -9.33815 -8.98786 -8.59837 -7.77050 -4.94479 -0.25895 0.40946 0.93135 1.40225 1.43067 1.51519 1.51823 2.17259 2.37035 2.64827 2.70412 3.55872 3.69467 3.84284 3.87072 3.99312 4.13495 4.17699 4.29604 4.32522 4.32978 4.36152 4.36990 4.46151 4.62735 4.65356 4.70794 4.74446 4.78826 4.89508 4.91302 4.95540 5.07337 5.08752 5.13867 5.19063 5.23440 5.28432 5.44446 5.49488 5.57973 5.62713 5.98264 6.32659 6.45099 6.70640 7.49683 7.64087 8.30049 8.53326 9.48696 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.005800 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3095.023745 B = 4826.316616 C = 6407.995756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.326 6.326 3 C 0.149 3.851 4 C -0.211 4.211 5 C -0.199 4.199 6 S 0.249 5.751 7 C -0.344 4.344 8 C 0.554 3.446 9 O -0.494 6.494 10 N -0.609 5.609 11 C 0.095 3.905 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.119 4.119 15 C 0.151 3.849 16 H 0.057 0.943 17 C 0.177 3.823 18 H 0.033 0.967 19 C -0.157 4.157 20 N -0.697 5.697 21 C -0.166 4.166 22 H 0.051 0.949 23 C -0.094 4.094 24 N -0.979 5.979 25 Si 0.956 3.044 26 H -0.276 1.276 27 H -0.293 1.293 28 H -0.303 1.303 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.176 0.824 33 H 0.212 0.788 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.362 0.638 46 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 10.344 -20.669 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.090 3.910 4 C -0.244 4.244 5 C -0.336 4.336 6 S 0.514 5.486 7 C -0.464 4.464 8 C 0.341 3.659 9 O -0.368 6.368 10 N -0.345 5.345 11 C -0.028 4.028 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.158 4.158 15 C 0.047 3.953 16 H 0.075 0.925 17 C 0.069 3.931 18 H 0.051 0.949 19 C -0.217 4.217 20 N -0.335 5.335 21 C -0.300 4.300 22 H 0.069 0.931 23 C -0.284 4.284 24 N -0.634 5.634 25 Si 0.789 3.211 26 H -0.201 1.201 27 H -0.220 1.220 28 H -0.231 1.231 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.193 0.807 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.193 0.807 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.093 10.357 -20.099 24.370 hybrid contribution -1.713 -0.967 1.704 2.603 sum -10.806 9.390 -18.395 23.309 Atomic orbital electron populations 1.23377 0.75972 1.05317 1.02701 1.86148 1.23765 1.25932 1.88150 1.18536 0.90040 0.86297 0.96096 1.20159 1.03197 0.89679 1.11319 1.25479 0.98210 1.05004 1.04906 1.82996 1.04667 0.92697 1.68205 1.22898 0.96011 1.00293 1.27180 1.16248 0.81698 0.85901 0.82046 1.91269 1.70335 1.39853 1.35337 1.47968 1.32537 1.24790 1.29251 1.22117 1.02981 0.89787 0.87914 1.21872 0.99383 0.99291 0.95694 1.21529 0.98978 0.95699 0.98895 1.22044 1.02468 0.98955 0.92333 1.21486 0.91357 0.86277 0.96135 0.92469 1.20546 0.96538 0.91906 0.84124 0.94942 1.22419 1.00326 0.98562 1.00360 1.42287 1.56399 1.34380 1.00402 1.19248 1.18781 1.05876 0.86073 0.93056 1.25218 1.03420 1.00271 0.99478 1.69808 1.43648 1.28738 1.21206 0.85249 0.77233 0.77539 0.81101 1.20135 1.22018 1.23136 0.90199 0.87370 0.91805 0.80718 0.77108 0.89323 0.90877 0.92541 0.87945 0.89499 0.91177 0.92399 0.89376 0.93435 0.95301 0.90631 0.80686 0.95058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.94 113.37 1.13 1.56 16 2 O -0.33 -11.27 10.35 -91.07 -0.94 -12.21 16 3 C 0.15 4.85 6.72 21.99 0.15 5.00 16 4 C -0.21 -4.72 9.17 21.17 0.19 -4.52 16 5 C -0.20 -3.76 10.90 66.77 0.73 -3.03 16 6 S 0.25 6.33 20.61 -56.49 -1.16 5.17 16 7 C -0.34 -12.44 4.91 22.90 0.11 -12.33 16 8 C 0.55 24.23 6.90 85.10 0.59 24.81 16 9 O -0.49 -27.40 10.32 -4.59 -0.05 -27.45 16 10 N -0.61 -21.73 2.97 -804.59 -2.39 -24.12 16 11 C 0.09 2.37 5.93 86.36 0.51 2.88 16 12 C -0.12 -2.35 6.08 30.68 0.19 -2.16 16 13 C -0.11 -2.16 5.88 30.62 0.18 -1.98 16 14 C -0.12 -3.12 4.35 30.82 0.13 -2.99 16 15 C 0.15 5.47 2.66 45.12 0.12 5.59 16 16 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 17 C 0.18 8.13 1.86 44.99 0.08 8.21 16 18 H 0.03 1.73 6.12 -2.39 -0.01 1.71 16 19 C -0.16 -6.24 8.54 71.98 0.61 -5.63 16 20 N -0.70 -39.73 3.37 -322.95 -1.09 -40.81 16 21 C -0.17 -10.55 8.41 84.03 0.71 -9.85 16 22 H 0.05 3.30 7.83 -2.91 -0.02 3.28 16 23 C -0.09 -6.12 5.50 84.86 0.47 -5.65 16 24 N -0.98 -66.28 13.06 21.65 0.28 -66.00 16 25 Si 0.96 52.76 29.55 68.60 2.03 54.79 16 26 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.29 -15.72 7.11 99.48 0.71 -15.01 16 28 H -0.30 -16.83 7.11 99.48 0.71 -16.12 16 29 H 0.08 1.18 7.88 -2.39 -0.02 1.16 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.19 7.88 -2.39 -0.02 1.17 16 32 H 0.18 2.68 6.99 -2.91 -0.02 2.66 16 33 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.09 2.09 4.65 -6.67 -0.03 2.06 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.09 2.09 6.73 -2.39 -0.02 2.07 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.03 1.25 7.96 -2.38 -0.02 1.24 16 44 H 0.07 2.39 6.45 -2.39 -0.02 2.38 16 45 H 0.36 22.26 7.65 -92.71 -0.71 21.55 16 46 H 0.24 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -88.07 369.04 2.85 -85.22 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.27 Total: 25.51 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.90 Total: -0.08 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -3.19 Total: -130.94 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.99 Total: -39.66 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.03 Total: 54.79 kcal Atomic # 16 Polarization: 6.33 SS G_CDS: -1.16 Total: 5.17 kcal Total: -88.07 2.85 -85.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479834071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.966 kcal (2) G-P(sol) polarization free energy of solvation -88.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds