Wall clock time and date at job start Tue Mar 31 2020 20:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47702 * 2 1 4 4 C 1.53005 * 109.46970 * 239.99446 * 2 1 3 5 5 C 1.52992 * 109.47277 * 175.00268 * 4 2 1 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21547 * 119.99723 * 359.72726 * 7 6 5 9 9 C 1.47843 * 119.99609 * 179.97438 * 7 6 5 10 10 C 1.39557 * 120.55081 * 359.72770 * 9 7 6 11 11 N 1.31656 * 120.62008 * 179.74873 * 10 9 7 12 12 C 1.31931 * 121.91067 * 0.53940 * 11 10 9 13 13 C 1.38543 * 121.04652 * 359.71742 * 12 11 10 14 14 F 1.35094 * 120.37911 * 179.97438 * 13 12 11 15 15 C 1.38619 * 119.24993 * 0.02562 * 13 12 11 16 16 N 1.46903 * 109.47155 * 119.99921 * 2 1 3 17 17 C 1.46893 * 111.00000 * 274.99755 * 16 2 1 18 18 C 1.50703 * 109.47533 * 179.97438 * 17 16 2 19 19 O 1.21297 * 119.99652 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00457 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00095 * 180.02562 * 20 18 17 22 22 H 1.07992 * 120.00241 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99878 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00287 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47014 * 59.99550 * 25 23 21 27 27 H 1.48498 * 109.47107 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46678 * 299.99906 * 25 23 21 29 29 H 1.09005 * 109.46801 * 300.00645 * 1 2 3 30 30 H 1.09002 * 109.46895 * 59.99544 * 1 2 3 31 31 H 1.08989 * 109.47700 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46840 * 55.00091 * 4 2 1 33 33 H 1.09005 * 109.47310 * 295.00481 * 4 2 1 34 34 H 1.09004 * 109.47330 * 60.00123 * 5 4 2 35 35 H 1.09005 * 109.47124 * 300.00327 * 5 4 2 36 36 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 37 37 H 1.07997 * 119.68665 * 0.02562 * 10 9 7 38 38 H 1.07998 * 119.48033 * 179.75249 * 12 11 10 39 39 H 1.07998 * 120.86719 * 180.02562 * 15 13 12 40 40 H 1.00903 * 110.99485 * 38.94876 * 16 2 1 41 41 H 1.08999 * 109.47086 * 300.00281 * 17 16 2 42 42 H 1.09008 * 109.47297 * 59.99775 * 17 16 2 43 43 H 0.97000 * 119.99733 * 0.02562 * 20 18 17 44 44 H 0.97000 * 119.99926 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 7 4.0530 -1.3038 -2.5101 7 6 5.3740 -1.3400 -2.7754 8 8 6.1597 -0.7957 -2.0245 9 6 5.8667 -2.0370 -3.9825 10 6 4.9747 -2.6661 -4.8521 11 7 5.4115 -3.2830 -5.9300 12 6 6.6955 -3.3427 -6.2273 13 6 7.6458 -2.7483 -5.4131 14 9 8.9572 -2.8181 -5.7302 15 6 7.2360 -2.0819 -4.2688 16 7 2.0197 -0.6925 1.1995 17 6 2.0826 0.2226 2.3468 18 6 2.5874 -0.5217 3.5561 19 8 2.8678 -1.6987 3.4703 20 7 2.7284 0.1205 4.7325 21 6 3.1882 -0.5565 5.8323 22 1 3.4370 -1.6046 5.7562 23 6 3.3330 0.1056 7.0453 24 7 3.0297 1.3809 7.1381 25 14 3.9588 -0.8171 8.5442 26 1 5.3148 -1.3541 8.2644 27 1 4.0229 0.1082 9.7039 28 1 3.0368 -1.9387 8.8555 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 1.6053 -0.2619 -2.1370 33 1 1.7516 -1.7717 -1.2055 34 1 3.9994 -1.0730 -0.4260 35 1 3.8532 0.4367 -1.3574 36 1 3.4257 -1.7353 -3.1110 37 1 3.9158 -2.6428 -4.6411 38 1 7.0108 -3.8627 -7.1199 39 1 7.9544 -1.6089 -3.6157 40 1 1.4495 -1.4979 1.4101 41 1 2.7589 1.0462 2.1181 42 1 1.0871 0.6164 2.5525 43 1 2.5045 1.0619 4.8009 44 1 3.1312 1.8432 7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480756268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:10 Heat of formation + Delta-G solvation = -84.683532 kcal Electronic energy + Delta-G solvation = -27512.947111 eV Core-core repulsion = 23186.623528 eV Total energy + Delta-G solvation = -4326.323582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.49703 -41.01044 -39.34528 -38.46959 -37.13946 -35.06972 -33.89548 -33.12132 -32.07040 -31.33053 -30.98323 -28.90715 -26.34466 -25.49272 -24.19485 -24.01586 -22.98417 -21.30304 -20.62352 -19.27762 -18.73728 -17.90497 -17.87587 -17.47532 -16.60939 -16.39608 -16.12613 -15.90241 -15.75305 -15.31191 -14.89011 -14.56661 -14.40682 -14.22052 -14.08021 -13.87543 -13.77555 -13.68021 -13.32750 -13.09556 -12.93198 -12.76999 -12.18182 -11.96840 -11.58495 -11.55945 -11.41167 -11.27890 -11.01165 -10.92621 -10.76378 -10.47639 -10.43144 -10.20000 -10.00198 -9.63587 -9.48617 -9.25732 -8.46378 -8.05217 -7.94438 -6.40317 -3.81073 -0.04476 0.41584 2.40401 2.71233 3.21375 3.21530 3.26879 3.31456 3.41847 3.69770 3.92305 4.08747 4.11045 4.14553 4.23560 4.31847 4.54202 4.63420 4.89888 4.96300 5.05795 5.15932 5.19991 5.27037 5.27411 5.33694 5.38032 5.49616 5.64595 5.73704 5.79931 5.90233 5.94946 6.04129 6.06474 6.14191 6.23847 6.29009 7.08663 7.15155 7.21219 7.56403 7.64700 7.86811 8.07512 8.62643 9.19250 9.55771 10.07260 10.77313 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.001884 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.717340 B =14861.945817 C =16369.981094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.121 3.879 6 N -0.720 5.720 7 C 0.558 3.442 8 O -0.522 6.522 9 C -0.152 4.152 10 C 0.123 3.877 11 N -0.458 5.458 12 C 0.095 3.905 13 C 0.046 3.954 14 F -0.124 7.124 15 C -0.052 4.052 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.350 0.650 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -3.143 -27.122 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.099 0.901 4 C -0.155 4.155 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.343 3.657 8 O -0.398 6.398 9 C -0.157 4.157 10 C -0.036 4.036 11 N -0.166 5.166 12 C -0.063 4.063 13 C 0.024 3.976 14 F -0.103 7.103 15 C -0.080 4.080 16 N -0.295 5.295 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.232 0.768 37 H 0.185 0.815 38 H 0.191 0.809 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.185 -3.717 -27.149 27.403 hybrid contribution -0.256 0.534 1.305 1.434 sum -0.071 -3.183 -25.843 26.039 Atomic orbital electron populations 1.22513 0.97091 1.02319 1.02262 1.21501 0.92485 0.98175 0.90509 0.90149 1.21765 0.94260 1.01893 0.97549 1.21496 0.94124 0.97341 0.87171 1.45954 1.06670 1.56877 1.27686 1.17862 0.82842 0.80410 0.84590 1.90856 1.55227 1.44944 1.48747 1.20997 0.94131 1.02512 0.98089 1.23083 1.00332 0.91357 0.88835 1.67758 1.15400 1.15904 1.17495 1.23159 0.87758 0.96270 0.99161 1.18682 0.79701 1.02345 0.96875 1.91568 1.31739 1.94571 1.92378 1.21852 0.96357 0.94853 0.94889 1.60209 1.57544 1.09146 1.02632 1.21698 0.99885 0.95731 0.90894 1.19822 0.85168 0.88249 0.84188 1.90524 1.55330 1.16307 1.84621 1.41855 1.57764 1.12435 1.07974 1.19647 1.40059 0.96412 0.86764 0.87997 1.25264 0.97657 0.95788 0.99259 1.69606 1.48659 1.08825 1.27257 0.85918 0.79482 0.78796 0.80022 1.19869 1.20993 1.19942 0.92308 0.92199 0.92272 0.91360 0.90968 0.88834 0.91535 0.76816 0.81520 0.80920 0.81987 0.82990 0.89605 0.93855 0.77479 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.16 37.16 0.34 -1.30 16 2 C 0.08 0.88 2.59 -67.71 -0.18 0.70 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.43 16 4 C -0.12 -0.97 5.00 -26.73 -0.13 -1.11 16 5 C 0.12 1.30 5.56 -4.05 -0.02 1.28 16 6 N -0.72 -6.35 5.51 -61.25 -0.34 -6.68 16 7 C 0.56 6.28 7.78 -12.33 -0.10 6.19 16 8 O -0.52 -8.21 16.42 5.32 0.09 -8.12 16 9 C -0.15 -1.34 5.89 -104.83 -0.62 -1.96 16 10 C 0.12 0.85 10.71 -17.14 -0.18 0.66 16 11 N -0.46 -3.53 10.34 -12.86 -0.13 -3.66 16 12 C 0.09 0.64 11.16 -17.40 -0.19 0.45 16 13 C 0.05 0.36 7.33 -39.33 -0.29 0.07 16 14 F -0.12 -1.03 17.28 2.25 0.04 -0.99 16 15 C -0.05 -0.47 9.70 -38.79 -0.38 -0.84 16 16 N -0.66 -9.76 5.33 -107.99 -0.58 -10.34 16 17 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 18 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 19 O -0.58 -15.78 15.78 5.54 0.09 -15.69 16 20 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 25 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.13 -51.94 -0.42 0.10 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.36 7.75 -51.93 -0.40 0.96 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 2.09 6.54 -40.82 -0.27 1.82 16 37 H 0.17 0.63 6.42 -52.49 -0.34 0.29 16 38 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.16 1.47 7.73 -52.49 -0.41 1.07 16 40 H 0.35 5.40 8.17 -39.29 -0.32 5.08 16 41 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 42 H 0.04 0.66 7.44 -51.92 -0.39 0.27 16 43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -34.54 383.21 -7.22 -41.75 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.70 Total: 12.90 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -2.10 Total: 7.14 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.38 Total: -58.99 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.54 -7.22 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480756268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.931 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds