Wall clock time and date at job start Tue Mar 31 2020 20:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47702 * 2 1 4 4 C 1.53005 * 109.46970 * 239.99446 * 2 1 3 5 5 C 1.52992 * 109.47277 * 175.00268 * 4 2 1 6 6 N 1.46499 * 109.47267 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21547 * 119.99723 * 359.72726 * 7 6 5 9 9 C 1.47843 * 119.99609 * 179.97438 * 7 6 5 10 10 C 1.39557 * 120.55081 * 359.72770 * 9 7 6 11 11 N 1.31656 * 120.62008 * 179.74873 * 10 9 7 12 12 C 1.31931 * 121.91067 * 0.53940 * 11 10 9 13 13 C 1.38543 * 121.04652 * 359.71742 * 12 11 10 14 14 F 1.35094 * 120.37911 * 179.97438 * 13 12 11 15 15 C 1.38619 * 119.24993 * 0.02562 * 13 12 11 16 16 N 1.46903 * 109.47155 * 119.99921 * 2 1 3 17 17 C 1.46893 * 111.00000 * 274.99755 * 16 2 1 18 18 C 1.50703 * 109.47533 * 179.97438 * 17 16 2 19 19 O 1.21297 * 119.99652 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00457 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00095 * 180.02562 * 20 18 17 22 22 H 1.07992 * 120.00241 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99878 * 180.02562 * 21 20 18 24 24 N 1.31418 * 120.00287 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47014 * 59.99550 * 25 23 21 27 27 H 1.48498 * 109.47107 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46678 * 299.99906 * 25 23 21 29 29 H 1.09005 * 109.46801 * 300.00645 * 1 2 3 30 30 H 1.09002 * 109.46895 * 59.99544 * 1 2 3 31 31 H 1.08989 * 109.47700 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46840 * 55.00091 * 4 2 1 33 33 H 1.09005 * 109.47310 * 295.00481 * 4 2 1 34 34 H 1.09004 * 109.47330 * 60.00123 * 5 4 2 35 35 H 1.09005 * 109.47124 * 300.00327 * 5 4 2 36 36 H 0.96999 * 119.99984 * 359.97438 * 6 5 4 37 37 H 1.07997 * 119.68665 * 0.02562 * 10 9 7 38 38 H 1.07998 * 119.48033 * 179.75249 * 12 11 10 39 39 H 1.07998 * 120.86719 * 180.02562 * 15 13 12 40 40 H 1.00903 * 110.99485 * 38.94876 * 16 2 1 41 41 H 1.08999 * 109.47086 * 300.00281 * 17 16 2 42 42 H 1.09008 * 109.47297 * 59.99775 * 17 16 2 43 43 H 0.97000 * 119.99733 * 0.02562 * 20 18 17 44 44 H 0.97000 * 119.99926 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 7 4.0530 -1.3038 -2.5101 7 6 5.3740 -1.3400 -2.7754 8 8 6.1597 -0.7957 -2.0245 9 6 5.8667 -2.0370 -3.9825 10 6 4.9747 -2.6661 -4.8521 11 7 5.4115 -3.2830 -5.9300 12 6 6.6955 -3.3427 -6.2273 13 6 7.6458 -2.7483 -5.4131 14 9 8.9572 -2.8181 -5.7302 15 6 7.2360 -2.0819 -4.2688 16 7 2.0197 -0.6925 1.1995 17 6 2.0826 0.2226 2.3468 18 6 2.5874 -0.5217 3.5561 19 8 2.8678 -1.6987 3.4703 20 7 2.7284 0.1205 4.7325 21 6 3.1882 -0.5565 5.8323 22 1 3.4370 -1.6046 5.7562 23 6 3.3330 0.1056 7.0453 24 7 3.0297 1.3809 7.1381 25 14 3.9588 -0.8171 8.5442 26 1 5.3148 -1.3541 8.2644 27 1 4.0229 0.1082 9.7039 28 1 3.0368 -1.9387 8.8555 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 1.6053 -0.2619 -2.1370 33 1 1.7516 -1.7717 -1.2055 34 1 3.9994 -1.0730 -0.4260 35 1 3.8532 0.4367 -1.3574 36 1 3.4257 -1.7353 -3.1110 37 1 3.9158 -2.6428 -4.6411 38 1 7.0108 -3.8627 -7.1199 39 1 7.9544 -1.6089 -3.6157 40 1 1.4495 -1.4979 1.4101 41 1 2.7589 1.0462 2.1181 42 1 1.0871 0.6164 2.5525 43 1 2.5045 1.0619 4.8009 44 1 3.1312 1.8432 7.9849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480756268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:09 Heat of formation + Delta-G solvation = -112.008683 kcal Electronic energy + Delta-G solvation = -27514.132018 eV Core-core repulsion = 23186.623528 eV Total energy + Delta-G solvation = -4327.508490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.12408 -41.71442 -40.27205 -40.06235 -38.29864 -36.15660 -35.81129 -33.81107 -33.32712 -32.85518 -31.97700 -29.71679 -27.94380 -26.26708 -25.65986 -24.79566 -23.82734 -22.15637 -21.50240 -21.05993 -19.92718 -19.48008 -18.54721 -18.04680 -17.73116 -17.28904 -17.05998 -16.84295 -16.76123 -16.67088 -16.34526 -16.04687 -15.63409 -15.25644 -15.06644 -15.00301 -14.69090 -14.40604 -14.36193 -14.16397 -14.01871 -13.53823 -13.51088 -13.47138 -13.08660 -12.83490 -12.64687 -12.44369 -12.26933 -12.17931 -12.09923 -11.72285 -11.58924 -11.50458 -11.16564 -10.73959 -10.34026 -10.30410 -10.07078 -10.01777 -9.22524 -8.47033 -5.95752 -0.67494 -0.20914 1.38850 1.40522 1.51526 1.62900 1.93438 2.05951 2.28681 2.54369 2.82859 2.96924 3.14107 3.20280 3.48915 3.55898 3.57407 3.61250 3.89301 3.93522 4.13941 4.25180 4.34434 4.38128 4.47711 4.52001 4.57749 4.63500 4.64351 4.72972 4.78899 4.93889 5.04772 5.22511 5.24187 5.31744 5.34767 5.40070 5.41768 5.92621 6.16151 6.40438 6.49718 6.52592 6.60082 7.08120 7.12296 7.56500 8.12028 8.70084 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.001884 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.717340 B =14861.945817 C =16369.981094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.104 4.104 5 C 0.126 3.874 6 N -0.702 5.702 7 C 0.556 3.444 8 O -0.578 6.578 9 C -0.165 4.165 10 C 0.138 3.862 11 N -0.469 5.469 12 C 0.109 3.891 13 C 0.039 3.961 14 F -0.129 7.129 15 C -0.064 4.064 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.201 0.799 38 H 0.204 0.796 39 H 0.149 0.851 40 H 0.345 0.655 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -3.335 -29.168 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 H 0.101 0.899 4 C -0.142 4.142 5 C 0.002 3.998 6 N -0.354 5.354 7 C 0.343 3.657 8 O -0.458 6.458 9 C -0.170 4.170 10 C -0.020 4.020 11 N -0.176 5.176 12 C -0.049 4.049 13 C 0.017 3.983 14 F -0.107 7.107 15 C -0.091 4.091 16 N -0.310 5.310 17 C -0.066 4.066 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.194 1.194 28 H -0.195 1.195 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.217 0.783 38 H 0.220 0.780 39 H 0.167 0.833 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.513 -3.899 -29.242 29.540 hybrid contribution 0.258 0.571 1.841 1.945 sum -1.255 -3.328 -27.401 27.631 Atomic orbital electron populations 1.22431 0.95376 1.02712 1.02961 1.21653 0.93806 0.98134 0.89175 0.89859 1.21720 0.92043 1.02530 0.97937 1.21308 0.95785 0.96452 0.86217 1.45767 1.06349 1.56043 1.27227 1.18262 0.83071 0.79698 0.84698 1.90827 1.56690 1.47549 1.50785 1.20806 0.94380 1.03894 0.97926 1.23525 1.01419 0.89419 0.87637 1.67902 1.15661 1.16355 1.17679 1.23636 0.87198 0.94767 0.99298 1.18708 0.79816 1.02891 0.96870 1.91555 1.32121 1.94668 1.92379 1.21890 0.96593 0.95248 0.95386 1.60221 1.58643 1.09135 1.03037 1.21525 1.00895 0.95343 0.88809 1.20985 0.83343 0.88054 0.85219 1.90489 1.56643 1.18412 1.85482 1.41941 1.58380 1.12587 1.08279 1.19617 1.42267 0.95931 0.88586 0.90429 1.26048 0.97260 0.96664 1.01415 1.69667 1.48607 1.09630 1.28184 0.84996 0.78659 0.77882 0.76839 1.19959 1.19401 1.19532 0.93381 0.89705 0.92049 0.87633 0.90304 0.93160 0.92398 0.74383 0.78265 0.77958 0.83301 0.83607 0.88357 0.91501 0.77007 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.16 71.98 0.66 -1.97 16 2 C 0.08 1.54 2.59 44.92 0.12 1.65 16 3 H 0.08 1.54 7.80 -2.39 -0.02 1.52 16 4 C -0.10 -1.47 5.00 30.59 0.15 -1.32 16 5 C 0.13 2.64 5.56 86.38 0.48 3.12 16 6 N -0.70 -11.55 5.51 -465.97 -2.57 -14.12 16 7 C 0.56 12.69 7.78 86.78 0.68 13.36 16 8 O -0.58 -19.35 16.42 -3.86 -0.06 -19.42 16 9 C -0.16 -2.83 5.89 -20.00 -0.12 -2.94 16 10 C 0.14 1.58 10.71 85.04 0.91 2.49 16 11 N -0.47 -5.96 10.34 -194.60 -2.01 -7.97 16 12 C 0.11 1.23 11.16 84.75 0.95 2.18 16 13 C 0.04 0.58 7.33 22.43 0.16 0.74 16 14 F -0.13 -2.09 17.28 44.97 0.78 -1.31 16 15 C -0.06 -1.17 9.70 22.78 0.22 -0.95 16 16 N -0.68 -19.64 5.33 -495.57 -2.64 -22.28 16 17 C 0.07 2.24 5.96 85.56 0.51 2.75 16 18 C 0.44 20.95 7.82 87.66 0.69 21.64 16 19 O -0.62 -34.94 15.78 -3.08 -0.05 -34.99 16 20 N -0.57 -29.96 5.29 -306.99 -1.62 -31.59 16 21 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 25 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H 0.05 0.83 7.45 -2.38 -0.02 0.82 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 32 H 0.11 0.79 8.14 -2.38 -0.02 0.78 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.05 1.52 7.75 -2.38 -0.02 1.51 16 35 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.42 3.19 6.54 -92.71 -0.61 2.58 16 37 H 0.20 0.74 6.42 -2.91 -0.02 0.72 16 38 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 39 H 0.15 3.03 7.73 -2.91 -0.02 3.01 16 40 H 0.34 10.55 8.17 -89.69 -0.73 9.81 16 41 H 0.10 3.07 8.05 -2.39 -0.02 3.05 16 42 H 0.07 1.95 7.44 -2.38 -0.02 1.93 16 43 H 0.40 19.59 7.90 -92.71 -0.73 18.85 16 44 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -78.79 383.21 -0.18 -78.97 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -1.00 Total: 35.08 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.69 Total: 21.92 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -8.56 Total: -125.99 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.11 Total: -54.41 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.31 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -78.79 -0.18 -78.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480756268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.039 kcal (2) G-P(sol) polarization free energy of solvation -78.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds