Wall clock time and date at job start Tue Mar 31 2020 21:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47082 * 2 1 4 4 C 1.46505 * 120.00210 * 278.18966 * 3 2 1 5 5 C 1.53002 * 109.47009 * 270.00420 * 4 3 2 6 6 N 1.46897 * 109.46900 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00375 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47717 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99605 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00433 * 179.97438 * 8 7 6 11 11 C 1.37092 * 120.00106 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00295 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99909 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99782 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99989 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46951 * 89.99866 * 15 13 11 17 17 H 1.48495 * 109.47063 * 210.00019 * 15 13 11 18 18 H 1.48498 * 109.46993 * 330.00281 * 15 13 11 19 19 C 1.34780 * 119.99905 * 98.19312 * 3 2 1 20 20 O 1.21549 * 119.99724 * 186.16418 * 19 3 2 21 21 C 1.47843 * 119.99983 * 6.16269 * 19 3 2 22 22 C 1.39563 * 120.54601 * 330.77682 * 21 19 3 23 23 N 1.31653 * 120.61841 * 179.97438 * 22 21 19 24 24 C 1.31934 * 121.91277 * 359.97438 * 23 22 21 25 25 C 1.38542 * 121.04585 * 0.02562 * 24 23 22 26 26 F 1.35098 * 120.37694 * 179.97438 * 25 24 23 27 27 C 1.38615 * 119.25035 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47354 * 299.99909 * 1 2 3 29 29 H 1.09005 * 109.47332 * 60.00267 * 1 2 3 30 30 H 1.09010 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46929 * 239.99605 * 2 1 3 32 32 H 1.09006 * 109.47036 * 120.00455 * 2 1 3 33 33 H 1.08998 * 109.46742 * 29.99965 * 4 3 2 34 34 H 1.08998 * 109.46980 * 150.00195 * 4 3 2 35 35 H 1.08998 * 109.46997 * 299.99388 * 5 4 3 36 36 H 1.08993 * 109.47438 * 59.99569 * 5 4 3 37 37 H 1.00901 * 111.00329 * 56.04338 * 6 5 4 38 38 H 1.09002 * 109.46888 * 299.99794 * 7 6 5 39 39 H 1.09000 * 109.47156 * 59.99626 * 7 6 5 40 40 H 0.97002 * 119.99573 * 359.97438 * 10 8 7 41 41 H 0.97008 * 119.99905 * 179.97438 * 14 13 11 42 42 H 1.07995 * 119.68776 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.48388 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.86701 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.0920 2.1321 -1.2558 5 6 3.4639 1.9174 -1.8985 6 7 3.5380 2.6709 -3.1573 7 6 4.8445 2.4887 -3.8038 8 6 4.8828 3.2741 -5.0893 9 8 3.9169 3.9223 -5.4330 10 7 5.9907 3.2571 -5.8567 11 6 6.0258 3.9721 -7.0259 12 1 5.1655 4.5485 -7.3324 13 6 7.1682 3.9550 -7.8167 14 7 8.2151 3.2539 -7.4436 15 14 7.2157 4.9285 -9.4103 16 1 7.7247 6.2969 -9.1393 17 1 8.1133 4.2492 -10.3788 18 1 5.8467 5.0134 -9.9794 19 6 2.3997 1.9610 1.1553 20 8 2.6980 3.1392 1.1744 21 6 2.4552 1.1641 2.3993 22 6 1.6034 0.0738 2.5818 23 7 1.6520 -0.6372 3.6888 24 6 2.4968 -0.3553 4.6622 25 6 3.3757 0.7107 4.5592 26 9 4.2347 0.9875 5.5645 27 6 3.3629 1.4908 3.4134 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3142 1.7823 -1.9345 34 1 1.9475 3.1933 -1.0535 35 1 4.2417 2.2673 -1.2198 36 1 3.6084 0.8562 -2.1007 37 1 3.3435 3.6492 -3.0053 38 1 5.6317 2.8424 -3.1379 39 1 4.9988 1.4315 -4.0196 40 1 6.7636 2.7396 -5.5812 41 1 9.0125 3.2417 -7.9958 42 1 0.8984 -0.1897 1.8073 43 1 2.5034 -0.9651 5.5536 44 1 4.0363 2.3282 3.3057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482917577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:41 Heat of formation + Delta-G solvation = -43.138406 kcal Electronic energy + Delta-G solvation = -28034.209676 eV Core-core repulsion = 23709.687625 eV Total energy + Delta-G solvation = -4324.522050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.53908 -41.50001 -39.57278 -38.29380 -36.97451 -35.53349 -33.88022 -33.17712 -32.34324 -31.23160 -31.01144 -29.25618 -26.44712 -25.11634 -24.45321 -23.94264 -23.57969 -22.25732 -20.18049 -19.23547 -18.64026 -18.04195 -17.89770 -17.78985 -16.77341 -16.46268 -16.27328 -16.19947 -15.54209 -15.47065 -14.97327 -14.61396 -14.48835 -14.30513 -14.11459 -13.90747 -13.82949 -13.51794 -13.43261 -13.30447 -13.06868 -12.63527 -12.41774 -12.19092 -12.04066 -11.62072 -11.55542 -11.50701 -11.16548 -11.00400 -10.83278 -10.54810 -10.39459 -10.22193 -10.06052 -9.55491 -9.51312 -9.17032 -8.48330 -8.11538 -7.96681 -6.41995 -3.82806 -0.07052 0.35079 2.19849 2.38761 3.01473 3.17908 3.26531 3.32546 3.36230 3.66997 3.81466 3.90187 4.05085 4.11983 4.14112 4.31968 4.41733 4.45229 4.59217 4.79671 4.86847 4.94306 5.06768 5.09608 5.16079 5.21682 5.25360 5.27276 5.28602 5.42885 5.65799 5.70241 5.80851 5.82133 5.85769 5.95874 6.08736 6.25793 6.86652 7.05411 7.13018 7.55050 7.58176 7.65579 8.05821 8.60738 9.17464 9.53727 10.05048 10.75734 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.001807 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.197688 B =15492.943984 C =16236.492692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.068 3.932 3 N -0.599 5.599 4 C 0.116 3.884 5 C 0.045 3.955 6 N -0.666 5.666 7 C 0.052 3.948 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.562 3.438 20 O -0.521 6.521 21 C -0.154 4.154 22 C 0.088 3.912 23 N -0.457 5.457 24 C 0.094 3.906 25 C 0.046 3.954 26 F -0.124 7.124 27 C -0.055 4.055 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.352 0.648 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.200 0.800 43 H 0.174 0.826 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.748 -11.809 24.102 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.054 4.054 3 N -0.331 5.331 4 C -0.006 4.006 5 C -0.085 4.085 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.348 3.652 20 O -0.397 6.397 21 C -0.159 4.159 22 C -0.068 4.068 23 N -0.165 5.165 24 C -0.065 4.065 25 C 0.024 3.976 26 F -0.102 7.102 27 C -0.082 4.082 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.216 0.784 43 H 0.191 0.809 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.894 -11.945 23.514 29.357 hybrid contribution 2.076 1.336 0.050 2.469 sum -10.818 -10.609 23.564 28.015 Atomic orbital electron populations 1.22337 0.94992 1.03447 1.03445 1.22482 0.95079 0.82682 1.05181 1.47787 1.63838 1.14413 1.07099 1.21497 0.98106 0.97913 0.83088 1.22256 0.96192 0.99510 0.90584 1.60014 1.30783 1.16670 1.22407 1.21656 0.89898 1.01115 0.95367 1.19779 0.84598 0.86494 0.86512 1.90524 1.35737 1.46561 1.73880 1.41859 1.13703 1.44009 1.20434 1.19709 1.00972 1.25076 0.97119 0.87882 1.25274 0.95048 0.97774 0.99914 1.69614 1.04314 1.40966 1.39428 0.85844 0.78354 0.79182 0.80832 1.20422 1.20927 1.19385 1.17987 0.77588 0.86721 0.82868 1.90842 1.48212 1.15132 1.85517 1.20907 0.99841 0.98714 0.96430 1.24487 0.97467 0.89614 0.95259 1.67895 1.19682 1.28442 1.00433 1.23214 0.90382 0.94076 0.98785 1.18654 0.93386 0.98394 0.87163 1.91570 1.67596 1.93159 1.57902 1.21778 0.97420 0.98487 0.90467 0.91806 0.90718 0.90325 0.89148 0.88112 0.88776 0.89237 0.95213 0.90960 0.82907 0.93808 0.89594 0.77458 0.91872 0.78438 0.80896 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.80 9.13 37.16 0.34 -0.46 16 2 C 0.07 0.38 5.58 -4.05 -0.02 0.36 16 3 N -0.60 -5.29 2.48 -174.80 -0.43 -5.72 16 4 C 0.12 1.21 5.73 -4.04 -0.02 1.19 16 5 C 0.05 0.56 6.01 -3.83 -0.02 0.53 16 6 N -0.67 -10.66 6.13 -115.07 -0.70 -11.36 16 7 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 8 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 9 O -0.58 -15.89 15.78 5.54 0.09 -15.80 16 10 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 11 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 15 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.56 6.05 7.48 -12.33 -0.09 5.95 16 20 O -0.52 -7.56 16.31 5.32 0.09 -7.47 16 21 C -0.15 -1.34 5.60 -104.83 -0.59 -1.93 16 22 C 0.09 0.62 8.68 -17.13 -0.15 0.48 16 23 N -0.46 -3.41 10.34 -12.87 -0.13 -3.54 16 24 C 0.09 0.61 11.16 -17.40 -0.19 0.41 16 25 C 0.05 0.34 7.33 -39.33 -0.29 0.06 16 26 F -0.12 -0.99 17.28 2.25 0.04 -0.95 16 27 C -0.05 -0.46 9.72 -38.80 -0.38 -0.84 16 28 H 0.06 0.29 7.07 -51.93 -0.37 -0.08 16 29 H 0.07 0.38 7.95 -51.93 -0.41 -0.03 16 30 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 31 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.10 0.50 4.04 -51.96 -0.21 0.29 16 33 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 34 H 0.09 1.08 7.35 -51.93 -0.38 0.69 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.35 5.93 8.43 -39.29 -0.33 5.60 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.20 1.02 2.52 -52.49 -0.13 0.89 16 43 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.16 1.34 7.98 -52.49 -0.42 0.92 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -33.94 376.59 -6.97 -40.91 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.45 Total: 11.52 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.77 Total: 8.98 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.61 Total: -58.97 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.94 -6.97 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482917577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.226 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds