Wall clock time and date at job start Tue Mar 31 2020 21:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46493 * 109.47082 * 2 1 4 4 C 1.46505 * 120.00210 * 278.18966 * 3 2 1 5 5 C 1.53002 * 109.47009 * 270.00420 * 4 3 2 6 6 N 1.46897 * 109.46900 * 180.02562 * 5 4 3 7 7 C 1.46895 * 111.00375 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47717 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99605 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00433 * 179.97438 * 8 7 6 11 11 C 1.37092 * 120.00106 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00295 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99909 * 179.97438 * 11 10 8 14 14 N 1.31406 * 119.99782 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99989 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46951 * 89.99866 * 15 13 11 17 17 H 1.48495 * 109.47063 * 210.00019 * 15 13 11 18 18 H 1.48498 * 109.46993 * 330.00281 * 15 13 11 19 19 C 1.34780 * 119.99905 * 98.19312 * 3 2 1 20 20 O 1.21549 * 119.99724 * 186.16418 * 19 3 2 21 21 C 1.47843 * 119.99983 * 6.16269 * 19 3 2 22 22 C 1.39563 * 120.54601 * 330.77682 * 21 19 3 23 23 N 1.31653 * 120.61841 * 179.97438 * 22 21 19 24 24 C 1.31934 * 121.91277 * 359.97438 * 23 22 21 25 25 C 1.38542 * 121.04585 * 0.02562 * 24 23 22 26 26 F 1.35098 * 120.37694 * 179.97438 * 25 24 23 27 27 C 1.38615 * 119.25035 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47354 * 299.99909 * 1 2 3 29 29 H 1.09005 * 109.47332 * 60.00267 * 1 2 3 30 30 H 1.09010 * 109.47484 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46929 * 239.99605 * 2 1 3 32 32 H 1.09006 * 109.47036 * 120.00455 * 2 1 3 33 33 H 1.08998 * 109.46742 * 29.99965 * 4 3 2 34 34 H 1.08998 * 109.46980 * 150.00195 * 4 3 2 35 35 H 1.08998 * 109.46997 * 299.99388 * 5 4 3 36 36 H 1.08993 * 109.47438 * 59.99569 * 5 4 3 37 37 H 1.00901 * 111.00329 * 56.04338 * 6 5 4 38 38 H 1.09002 * 109.46888 * 299.99794 * 7 6 5 39 39 H 1.09000 * 109.47156 * 59.99626 * 7 6 5 40 40 H 0.97002 * 119.99573 * 359.97438 * 10 8 7 41 41 H 0.97008 * 119.99905 * 179.97438 * 14 13 11 42 42 H 1.07995 * 119.68776 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.48388 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.86701 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.0920 2.1321 -1.2558 5 6 3.4639 1.9174 -1.8985 6 7 3.5380 2.6709 -3.1573 7 6 4.8445 2.4887 -3.8038 8 6 4.8828 3.2741 -5.0893 9 8 3.9169 3.9223 -5.4330 10 7 5.9907 3.2571 -5.8567 11 6 6.0258 3.9721 -7.0259 12 1 5.1655 4.5485 -7.3324 13 6 7.1682 3.9550 -7.8167 14 7 8.2151 3.2539 -7.4436 15 14 7.2157 4.9285 -9.4103 16 1 7.7247 6.2969 -9.1393 17 1 8.1133 4.2492 -10.3788 18 1 5.8467 5.0134 -9.9794 19 6 2.3997 1.9610 1.1553 20 8 2.6980 3.1392 1.1744 21 6 2.4552 1.1641 2.3993 22 6 1.6034 0.0738 2.5818 23 7 1.6520 -0.6372 3.6888 24 6 2.4968 -0.3553 4.6622 25 6 3.3757 0.7107 4.5592 26 9 4.2347 0.9875 5.5645 27 6 3.3629 1.4908 3.4134 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3142 1.7823 -1.9345 34 1 1.9475 3.1933 -1.0535 35 1 4.2417 2.2673 -1.2198 36 1 3.6084 0.8562 -2.1007 37 1 3.3435 3.6492 -3.0053 38 1 5.6317 2.8424 -3.1379 39 1 4.9988 1.4315 -4.0196 40 1 6.7636 2.7396 -5.5812 41 1 9.0125 3.2417 -7.9958 42 1 0.8984 -0.1897 1.8073 43 1 2.5034 -0.9651 5.5536 44 1 4.0363 2.3282 3.3057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482917577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:40 Heat of formation + Delta-G solvation = -68.429754 kcal Electronic energy + Delta-G solvation = -28035.306391 eV Core-core repulsion = 23709.687625 eV Total energy + Delta-G solvation = -4325.618765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.13957 -42.17034 -40.33929 -40.10584 -37.86064 -36.73490 -35.85052 -33.84336 -33.33007 -33.03194 -31.57871 -30.31308 -27.87661 -26.27353 -25.27605 -24.93859 -24.24658 -23.24551 -21.24738 -20.75042 -19.92458 -19.27332 -18.66768 -18.36784 -17.92302 -17.38996 -17.25506 -17.02352 -16.84722 -16.52067 -16.29702 -15.94264 -15.50083 -15.34277 -15.22697 -15.01429 -14.77317 -14.57852 -14.43614 -14.10486 -13.92188 -13.71251 -13.52551 -13.37454 -13.11594 -12.96205 -12.76373 -12.62085 -12.42756 -12.13231 -12.12237 -12.08740 -11.54472 -11.52055 -11.19448 -10.74955 -10.41073 -10.12927 -10.03423 -9.90431 -9.45498 -8.47908 -5.96833 -0.67218 -0.25502 1.37574 1.41311 1.43110 1.54528 1.66323 2.02656 2.28688 2.40233 2.75957 2.94686 3.09140 3.19037 3.26543 3.48887 3.52406 3.57126 3.84298 3.91790 3.97004 4.05412 4.23609 4.27514 4.33281 4.44331 4.45986 4.50795 4.55536 4.56059 4.65651 4.77529 4.81825 4.92184 4.93922 5.28644 5.35150 5.37857 5.40047 5.80956 6.04067 6.13893 6.26712 6.49002 6.58028 6.85391 7.10842 7.53847 8.08875 8.69458 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.001807 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.197688 B =15492.943984 C =16236.492692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.063 3.937 3 N -0.592 5.592 4 C 0.122 3.878 5 C 0.053 3.947 6 N -0.674 5.674 7 C 0.066 3.934 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 C 0.559 3.441 20 O -0.570 6.570 21 C -0.167 4.167 22 C 0.101 3.899 23 N -0.465 5.465 24 C 0.107 3.893 25 C 0.040 3.960 26 F -0.128 7.128 27 C -0.064 4.064 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.091 0.909 37 H 0.344 0.656 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.218 0.782 43 H 0.205 0.795 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.215 -13.921 24.730 30.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.058 4.058 3 N -0.323 5.323 4 C -0.001 4.001 5 C -0.077 4.077 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.508 6.508 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 C 0.347 3.653 20 O -0.450 6.450 21 C -0.172 4.172 22 C -0.055 4.055 23 N -0.172 5.172 24 C -0.052 4.052 25 C 0.019 3.981 26 F -0.106 7.106 27 C -0.091 4.091 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.234 0.766 43 H 0.221 0.779 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.361 -14.117 24.160 31.008 hybrid contribution 2.190 1.938 -0.074 2.925 sum -11.172 -12.179 24.086 29.211 Atomic orbital electron populations 1.22339 0.93757 1.04857 1.03078 1.22757 0.96033 0.80679 1.06319 1.47847 1.62973 1.15500 1.05938 1.21331 0.97522 0.97274 0.83926 1.22277 0.96905 0.99763 0.88747 1.60034 1.29695 1.16558 1.24367 1.21524 0.91437 1.01188 0.92477 1.20816 0.83273 0.85726 0.87706 1.90493 1.36971 1.48161 1.75217 1.41928 1.14479 1.44220 1.20336 1.19679 1.01055 1.26665 0.98993 0.90233 1.26071 0.94288 0.98342 1.02685 1.69673 1.04631 1.41294 1.40498 0.84905 0.78272 0.78028 0.76999 1.19714 1.19457 1.19687 1.18331 0.76812 0.86296 0.83855 1.90814 1.50594 1.17217 1.86332 1.20756 1.01108 0.99572 0.95746 1.24737 0.96768 0.88478 0.95529 1.68012 1.20024 1.28545 1.00668 1.23692 0.88864 0.93321 0.99276 1.18686 0.93863 0.98789 0.86771 1.91561 1.67831 1.93264 1.57959 1.21824 0.97551 0.98613 0.91120 0.91973 0.91338 0.87991 0.87817 0.87151 0.87251 0.91282 0.96191 0.89087 0.83802 0.92169 0.87249 0.76961 0.91266 0.76647 0.77880 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.13 71.98 0.66 -0.46 16 2 C 0.06 0.55 5.58 86.38 0.48 1.03 16 3 N -0.59 -9.88 2.48 -825.23 -2.05 -11.92 16 4 C 0.12 2.48 5.73 86.38 0.49 2.98 16 5 C 0.05 1.24 6.01 86.30 0.52 1.76 16 6 N -0.67 -21.21 6.13 -517.96 -3.17 -24.39 16 7 C 0.07 2.29 6.17 85.56 0.53 2.82 16 8 C 0.44 21.02 7.82 87.66 0.69 21.70 16 9 O -0.62 -34.73 15.78 -3.08 -0.05 -34.78 16 10 N -0.57 -29.65 5.29 -306.98 -1.62 -31.27 16 11 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 12 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 15 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C 0.56 12.08 7.48 86.79 0.65 12.73 16 20 O -0.57 -17.33 16.31 -3.87 -0.06 -17.39 16 21 C -0.17 -2.81 5.60 -20.00 -0.11 -2.92 16 22 C 0.10 1.23 8.68 85.04 0.74 1.97 16 23 N -0.47 -5.77 10.34 -194.65 -2.01 -7.78 16 24 C 0.11 1.13 11.16 84.75 0.95 2.08 16 25 C 0.04 0.57 7.33 22.43 0.16 0.73 16 26 F -0.13 -1.94 17.28 44.97 0.78 -1.16 16 27 C -0.06 -1.09 9.72 22.78 0.22 -0.87 16 28 H 0.06 0.42 7.07 -2.39 -0.02 0.41 16 29 H 0.07 0.55 7.95 -2.38 -0.02 0.53 16 30 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.10 0.70 8.13 -2.38 -0.02 0.68 16 32 H 0.11 0.79 4.04 -2.42 -0.01 0.78 16 33 H 0.11 1.89 7.88 -2.39 -0.02 1.87 16 34 H 0.07 1.72 7.35 -2.39 -0.02 1.70 16 35 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.34 11.77 8.43 -89.69 -0.76 11.01 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 41 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 42 H 0.22 1.68 2.52 -2.91 -0.01 1.67 16 43 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.15 2.73 7.98 -2.91 -0.02 2.71 16 Total: -1.00 -74.71 376.59 0.96 -73.74 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.41 Total: 34.44 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 7.25 Total: 24.94 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -8.57 Total: -124.94 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -0.11 Total: -52.17 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.78 Total: -1.16 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.71 0.96 -73.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482917577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.313 kcal (2) G-P(sol) polarization free energy of solvation -74.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds