Wall clock time and date at job start Tue Mar 31 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47355 * 2 1 4 4 C 1.53002 * 109.47018 * 239.99433 * 2 1 3 5 5 N 1.46893 * 109.47130 * 184.99979 * 4 2 1 6 6 C 1.46900 * 110.99807 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47051 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00026 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99856 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.38949 * 119.99757 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00087 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46967 * 89.99812 * 14 12 10 16 16 H 1.48503 * 109.46771 * 209.99535 * 14 12 10 17 17 H 1.48497 * 109.47104 * 329.99931 * 14 12 10 18 18 N 1.46508 * 109.47136 * 119.99778 * 2 1 3 19 19 C 1.34768 * 119.99714 * 274.99963 * 18 2 1 20 20 O 1.21275 * 120.00423 * 359.97438 * 19 18 2 21 21 C 1.50707 * 119.99766 * 179.97438 * 19 18 2 22 22 C 1.50703 * 109.47028 * 179.97438 * 21 19 18 23 23 N 1.31873 * 119.63315 * 270.02137 * 22 21 19 24 24 C 1.31845 * 121.74566 * 179.72587 * 23 22 21 25 25 C 1.38238 * 120.82153 * 0.54910 * 24 23 22 26 26 C 1.38588 * 119.18753 * 359.44238 * 25 24 23 27 27 C 1.38413 * 119.63374 * 90.00169 * 22 21 19 28 28 F 1.35101 * 120.44736 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46724 * 300.00005 * 1 2 3 31 31 H 1.08997 * 109.47131 * 60.00431 * 1 2 3 32 32 H 1.08999 * 109.47296 * 305.00622 * 4 2 1 33 33 H 1.09007 * 109.46941 * 65.00071 * 4 2 1 34 34 H 1.00904 * 111.00139 * 56.04775 * 5 4 2 35 35 H 1.08993 * 109.47310 * 299.99856 * 6 5 4 36 36 H 1.09000 * 109.47197 * 60.00084 * 6 5 4 37 37 H 0.96996 * 120.00070 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00077 * 180.02562 * 13 12 10 39 39 H 0.96994 * 119.99650 * 94.99910 * 18 2 1 40 40 H 1.09002 * 109.46983 * 59.99781 * 21 19 18 41 41 H 1.08996 * 109.47122 * 299.99882 * 21 19 18 42 42 H 1.08000 * 119.59406 * 180.27083 * 24 23 22 43 43 H 1.08002 * 120.40978 * 179.72508 * 25 24 23 44 44 H 1.07999 * 120.80386 * 180.30037 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0303 -1.5151 -2.3767 7 6 5.5316 -1.6036 -2.2813 8 8 6.1067 -1.1394 -1.3194 9 7 6.2354 -2.1994 -3.2642 10 6 7.6012 -2.2804 -3.1772 11 1 8.1132 -1.8671 -2.3207 12 6 8.3267 -2.8952 -4.1903 13 7 9.6359 -2.9723 -4.1071 14 14 7.4411 -3.6107 -5.6713 15 1 7.3220 -2.5723 -6.7261 16 1 8.2117 -4.7656 -6.1984 17 1 6.0858 -4.0630 -5.2666 18 7 2.0184 -0.6906 1.1963 19 6 2.1471 -0.0182 2.3571 20 8 1.8591 1.1586 2.4114 21 6 2.6489 -0.7287 3.5878 22 6 2.7003 0.2399 4.7412 23 7 3.7992 0.9353 4.9602 24 6 3.8880 1.7977 5.9535 25 6 2.8257 1.9971 6.8154 26 6 1.6528 1.2858 6.6184 27 6 1.5935 0.3901 5.5586 28 9 0.4703 -0.3245 5.3283 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7199 -1.2951 33 1 1.7516 -0.1585 -2.1370 34 1 3.7996 -1.2885 -0.3432 35 1 3.6095 -2.5191 -2.4307 36 1 3.7557 -0.9574 -3.2720 37 1 5.7755 -2.5716 -4.0329 38 1 10.1424 -3.4012 -4.8146 39 1 2.2490 -1.6317 1.1527 40 1 3.6480 -1.1213 3.3986 41 1 1.9760 -1.5504 3.8327 42 1 4.8035 2.3520 6.0983 43 1 2.9073 2.7021 7.6295 44 1 0.8051 1.4247 7.2731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483160676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:42 Heat of formation + Delta-G solvation = -75.131916 kcal Electronic energy + Delta-G solvation = -28248.477591 eV Core-core repulsion = 23922.568198 eV Total energy + Delta-G solvation = -4325.909393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.29716 -40.63107 -39.67434 -38.48777 -36.81888 -34.33310 -33.71298 -33.55428 -32.26331 -31.66871 -31.17130 -28.40470 -27.77968 -25.06272 -23.95576 -23.45879 -23.05913 -21.40057 -20.55380 -19.39612 -18.40241 -18.03115 -17.60864 -17.47965 -16.90175 -16.20635 -16.17854 -15.82886 -15.51491 -15.22006 -14.86898 -14.39930 -14.32861 -14.18284 -14.13700 -13.88210 -13.47084 -13.39042 -13.23119 -13.16273 -12.78989 -12.70819 -12.34143 -12.26498 -12.19562 -11.93995 -11.80279 -11.65604 -11.18350 -11.04955 -10.60412 -10.30054 -9.97935 -9.96833 -9.88248 -9.57789 -9.22545 -9.15687 -8.60371 -8.21306 -8.16528 -6.31256 -3.82767 0.57050 0.76534 2.55196 2.91035 3.01213 3.06383 3.14381 3.39921 3.66275 3.72913 3.93157 4.00412 4.09914 4.21456 4.36209 4.57178 4.62385 4.77298 4.82120 4.96160 5.03172 5.06530 5.16926 5.22366 5.26053 5.35933 5.38104 5.49648 5.50325 5.54202 5.61020 5.65002 5.76743 5.90106 5.91429 6.04130 6.26678 6.37507 7.01636 7.33174 7.50362 7.55710 7.57794 8.10953 8.14258 8.59362 8.94804 9.41996 9.82165 10.81861 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002152 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.180315 B =13007.979199 C =14295.172763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.048 3.952 7 C 0.448 3.552 8 O -0.563 6.563 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.722 5.722 19 C 0.529 3.471 20 O -0.533 6.533 21 C -0.101 4.101 22 C 0.129 3.871 23 N -0.443 5.443 24 C 0.096 3.904 25 C -0.147 4.147 26 C -0.109 4.109 27 C 0.058 3.942 28 F -0.129 7.129 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.087 0.913 34 H 0.349 0.651 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.398 0.602 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.166 0.834 43 H 0.146 0.854 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.567 3.395 16.761 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.116 0.884 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.444 6.444 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.374 5.374 19 C 0.315 3.685 20 O -0.409 6.409 21 C -0.141 4.141 22 C -0.011 4.011 23 N -0.151 5.151 24 C -0.062 4.062 25 C -0.167 4.167 26 C -0.136 4.136 27 C 0.037 3.963 28 F -0.108 7.108 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.170 0.830 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.233 0.767 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.183 0.817 43 H 0.163 0.837 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.377 4.983 16.532 26.709 hybrid contribution -1.581 -2.012 -0.648 2.640 sum -21.958 2.971 15.884 27.263 Atomic orbital electron populations 1.22148 0.95017 1.02072 1.02760 1.21038 0.93391 0.98564 0.82977 0.88368 1.22306 0.88679 0.99006 0.97913 1.59987 1.07620 1.57522 1.04893 1.21725 0.94922 0.97081 0.94797 1.19706 0.87995 0.83876 0.85018 1.90584 1.70975 1.50032 1.32822 1.42206 1.07872 1.52899 1.20033 1.19438 0.79519 1.35918 1.08473 0.86266 1.25046 0.95451 0.97689 0.98033 1.69623 1.05064 1.43397 1.34012 0.86661 0.79497 0.79780 0.83364 1.19595 1.20204 1.19572 1.45933 1.67835 1.13915 1.09712 1.20092 0.77179 0.87172 0.84078 1.90715 1.49517 1.15720 1.84943 1.20597 1.05881 0.97158 0.90455 1.20603 0.88723 0.96663 0.95139 1.67536 1.24521 1.05053 1.18008 1.22880 0.99000 0.94413 0.89859 1.22099 0.93114 1.00236 1.01224 1.21622 0.99873 0.95225 0.96830 1.18502 0.84114 0.95576 0.98142 1.91505 1.49121 1.76014 1.94158 0.92512 0.91922 0.91386 0.94913 0.89430 0.83042 0.93736 0.89338 0.79711 0.91612 0.76746 0.85736 0.86960 0.81685 0.83671 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.59 2.88 -67.92 -0.20 1.39 16 3 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 4 C 0.05 0.55 5.30 -3.83 -0.02 0.53 16 5 N -0.67 -9.98 6.12 -115.06 -0.70 -10.69 16 6 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 7 C 0.45 10.10 7.82 -10.98 -0.09 10.02 16 8 O -0.56 -15.15 15.78 5.54 0.09 -15.06 16 9 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 10 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 11 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 14 Si 0.88 19.26 27.74 -169.99 -4.71 14.54 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 18 N -0.72 -7.61 4.36 -53.80 -0.23 -7.84 16 19 C 0.53 6.74 7.79 -10.99 -0.09 6.65 16 20 O -0.53 -8.86 15.70 5.56 0.09 -8.77 16 21 C -0.10 -1.03 5.82 -29.03 -0.17 -1.20 16 22 C 0.13 1.53 5.28 -82.51 -0.44 1.09 16 23 N -0.44 -5.56 10.27 -9.42 -0.10 -5.66 16 24 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 25 C -0.15 -1.06 10.11 -39.45 -0.40 -1.46 16 26 C -0.11 -0.89 10.16 -39.21 -0.40 -1.29 16 27 C 0.06 0.62 7.27 -39.28 -0.29 0.33 16 28 F -0.13 -1.38 16.49 2.25 0.04 -1.34 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.35 5.35 7.28 -39.29 -0.29 5.07 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.40 3.24 8.15 -40.82 -0.33 2.91 16 40 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.11 0.83 7.63 -51.93 -0.40 0.43 16 42 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -37.44 382.56 -7.10 -44.54 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -5.85 Total: 14.89 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.20 Total: 8.63 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.32 Total: -63.19 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.71 Total: 14.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.44 -7.10 -44.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483160676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.591 kcal (2) G-P(sol) polarization free energy of solvation -37.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds