Wall clock time and date at job start Tue Mar 31 2020 20:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47355 * 2 1 4 4 C 1.53002 * 109.47018 * 239.99433 * 2 1 3 5 5 N 1.46893 * 109.47130 * 184.99979 * 4 2 1 6 6 C 1.46900 * 110.99807 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47051 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00026 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99856 * 180.02562 * 9 7 6 11 11 H 1.08007 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.38949 * 119.99757 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00087 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.46967 * 89.99812 * 14 12 10 16 16 H 1.48503 * 109.46771 * 209.99535 * 14 12 10 17 17 H 1.48497 * 109.47104 * 329.99931 * 14 12 10 18 18 N 1.46508 * 109.47136 * 119.99778 * 2 1 3 19 19 C 1.34768 * 119.99714 * 274.99963 * 18 2 1 20 20 O 1.21275 * 120.00423 * 359.97438 * 19 18 2 21 21 C 1.50707 * 119.99766 * 179.97438 * 19 18 2 22 22 C 1.50703 * 109.47028 * 179.97438 * 21 19 18 23 23 N 1.31873 * 119.63315 * 270.02137 * 22 21 19 24 24 C 1.31845 * 121.74566 * 179.72587 * 23 22 21 25 25 C 1.38238 * 120.82153 * 0.54910 * 24 23 22 26 26 C 1.38588 * 119.18753 * 359.44238 * 25 24 23 27 27 C 1.38413 * 119.63374 * 90.00169 * 22 21 19 28 28 F 1.35101 * 120.44736 * 359.97438 * 27 22 21 29 29 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46724 * 300.00005 * 1 2 3 31 31 H 1.08997 * 109.47131 * 60.00431 * 1 2 3 32 32 H 1.08999 * 109.47296 * 305.00622 * 4 2 1 33 33 H 1.09007 * 109.46941 * 65.00071 * 4 2 1 34 34 H 1.00904 * 111.00139 * 56.04775 * 5 4 2 35 35 H 1.08993 * 109.47310 * 299.99856 * 6 5 4 36 36 H 1.09000 * 109.47197 * 60.00084 * 6 5 4 37 37 H 0.96996 * 120.00070 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00077 * 180.02562 * 13 12 10 39 39 H 0.96994 * 119.99650 * 94.99910 * 18 2 1 40 40 H 1.09002 * 109.46983 * 59.99781 * 21 19 18 41 41 H 1.08996 * 109.47122 * 299.99882 * 21 19 18 42 42 H 1.08000 * 119.59406 * 180.27083 * 24 23 22 43 43 H 1.08002 * 120.40978 * 179.72508 * 25 24 23 44 44 H 1.07999 * 120.80386 * 180.30037 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0303 -1.5151 -2.3767 7 6 5.5316 -1.6036 -2.2813 8 8 6.1067 -1.1394 -1.3194 9 7 6.2354 -2.1994 -3.2642 10 6 7.6012 -2.2804 -3.1772 11 1 8.1132 -1.8671 -2.3207 12 6 8.3267 -2.8952 -4.1903 13 7 9.6359 -2.9723 -4.1071 14 14 7.4411 -3.6107 -5.6713 15 1 7.3220 -2.5723 -6.7261 16 1 8.2117 -4.7656 -6.1984 17 1 6.0858 -4.0630 -5.2666 18 7 2.0184 -0.6906 1.1963 19 6 2.1471 -0.0182 2.3571 20 8 1.8591 1.1586 2.4114 21 6 2.6489 -0.7287 3.5878 22 6 2.7003 0.2399 4.7412 23 7 3.7992 0.9353 4.9602 24 6 3.8880 1.7977 5.9535 25 6 2.8257 1.9971 6.8154 26 6 1.6528 1.2858 6.6184 27 6 1.5935 0.3901 5.5586 28 9 0.4703 -0.3245 5.3283 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7199 -1.2951 33 1 1.7516 -0.1585 -2.1370 34 1 3.7996 -1.2885 -0.3432 35 1 3.6095 -2.5191 -2.4307 36 1 3.7557 -0.9574 -3.2720 37 1 5.7755 -2.5716 -4.0329 38 1 10.1424 -3.4012 -4.8146 39 1 2.2490 -1.6317 1.1527 40 1 3.6480 -1.1213 3.3986 41 1 1.9760 -1.5504 3.8327 42 1 4.8035 2.3520 6.0983 43 1 2.9073 2.7021 7.6295 44 1 0.8051 1.4247 7.2731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483160676.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:41 Heat of formation + Delta-G solvation = -106.463385 kcal Electronic energy + Delta-G solvation = -28249.836226 eV Core-core repulsion = 23922.568198 eV Total energy + Delta-G solvation = -4327.268027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06784 -41.44015 -40.59236 -40.22051 -37.90658 -36.06648 -35.11576 -34.31583 -33.73574 -33.02701 -32.04667 -29.20711 -29.05984 -26.63200 -24.73271 -24.56151 -24.03563 -22.24955 -21.49364 -21.27527 -20.27582 -18.77251 -18.54287 -18.29369 -17.87111 -17.52622 -17.08064 -16.93089 -16.68650 -16.51398 -16.19647 -15.69764 -15.48915 -15.13266 -14.98076 -14.93300 -14.76933 -14.46748 -14.22611 -14.19589 -14.08426 -14.03017 -13.54816 -13.15812 -13.06728 -13.05004 -12.97720 -12.80642 -12.62515 -12.40376 -11.98972 -11.93316 -11.50918 -11.13862 -10.83648 -10.62255 -10.45398 -10.24483 -10.13196 -9.89435 -9.31497 -8.40674 -6.01910 -0.14343 0.08695 1.30554 1.37036 1.45649 1.58120 1.96549 2.09109 2.23973 2.64861 2.72806 2.95864 3.15634 3.21067 3.37939 3.53108 3.72292 3.81160 3.94360 3.97389 4.13900 4.21209 4.29611 4.33433 4.39887 4.45364 4.55108 4.57744 4.68239 4.69643 4.76059 4.78994 4.88950 4.99882 5.07787 5.26732 5.50628 5.53238 5.60975 5.89939 6.03661 6.36154 6.47123 6.60347 6.83680 6.88861 7.19681 7.40408 7.97740 8.77097 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002152 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.180315 B =13007.979199 C =14295.172763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.061 0.939 4 C 0.059 3.941 5 N -0.694 5.694 6 C 0.063 3.937 7 C 0.445 3.555 8 O -0.616 6.616 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.228 1.228 18 N -0.712 5.712 19 C 0.524 3.476 20 O -0.579 6.579 21 C -0.098 4.098 22 C 0.102 3.898 23 N -0.485 5.485 24 C 0.079 3.921 25 C -0.133 4.133 26 C -0.109 4.109 27 C 0.040 3.960 28 F -0.134 7.134 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.343 0.657 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.391 0.609 38 H 0.279 0.721 39 H 0.412 0.588 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.186 0.814 43 H 0.186 0.814 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.053 2.219 15.622 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.070 4.070 5 N -0.327 5.327 6 C -0.069 4.069 7 C 0.234 3.766 8 O -0.501 6.501 9 N -0.232 5.232 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.151 1.151 18 N -0.364 5.364 19 C 0.311 3.689 20 O -0.459 6.459 21 C -0.138 4.138 22 C -0.037 4.037 23 N -0.194 5.194 24 C -0.078 4.078 25 C -0.152 4.152 26 C -0.135 4.135 27 C 0.019 3.981 28 F -0.112 7.112 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.203 0.797 43 H 0.203 0.797 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -23.905 3.775 15.381 28.675 hybrid contribution -0.422 -1.528 -0.136 1.591 sum -24.327 2.247 15.244 28.797 Atomic orbital electron populations 1.22053 0.93085 1.03297 1.02514 1.21012 0.94773 0.96822 0.83387 0.92060 1.22355 0.85948 1.00807 0.97921 1.59955 1.10487 1.57923 1.04350 1.21651 0.89104 0.99991 0.96186 1.21090 0.90989 0.81242 0.83325 1.90565 1.73026 1.51610 1.34865 1.42021 1.06078 1.53753 1.21346 1.18999 0.82002 1.37405 1.07416 0.92911 1.26165 0.96224 0.97347 1.01863 1.69813 1.07557 1.44461 1.35778 0.85332 0.79777 0.78738 0.77446 1.18297 1.20087 1.15077 1.45896 1.66915 1.14478 1.09124 1.20540 0.76493 0.86751 0.85139 1.90679 1.51740 1.17717 1.85744 1.20647 1.06363 0.97486 0.89284 1.20796 0.89318 0.97553 0.96061 1.67501 1.25507 1.06555 1.19814 1.23408 1.00700 0.94035 0.89639 1.22512 0.91736 0.99755 1.01200 1.22063 1.01166 0.94066 0.96212 1.18716 0.83802 0.96535 0.99096 1.91482 1.49169 1.76259 1.94327 0.90434 0.93982 0.89855 0.91663 0.88019 0.83724 0.89743 0.86605 0.77375 0.91161 0.75186 0.85645 0.84342 0.79717 0.79655 0.80626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 3.03 2.88 44.99 0.13 3.15 16 3 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 4 C 0.06 1.06 5.30 86.31 0.46 1.52 16 5 N -0.69 -19.44 6.12 -517.94 -3.17 -22.61 16 6 C 0.06 1.79 6.17 85.56 0.53 2.32 16 7 C 0.45 19.88 7.82 87.66 0.69 20.57 16 8 O -0.62 -34.50 15.78 -3.09 -0.05 -34.55 16 9 N -0.59 -27.51 5.09 -306.96 -1.56 -29.07 16 10 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 11 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 12 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 13 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 14 Si 0.97 38.36 27.74 68.60 1.90 40.27 16 15 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 17 H -0.23 -7.41 6.52 99.48 0.65 -6.77 16 18 N -0.71 -14.73 4.36 -442.52 -1.93 -16.66 16 19 C 0.52 13.83 7.79 87.66 0.68 14.51 16 20 O -0.58 -20.34 15.70 -3.01 -0.05 -20.38 16 21 C -0.10 -2.09 5.82 29.11 0.17 -1.92 16 22 C 0.10 2.51 5.28 42.60 0.22 2.73 16 23 N -0.49 -12.73 10.27 -183.71 -1.89 -14.62 16 24 C 0.08 1.47 11.18 84.69 0.95 2.42 16 25 C -0.13 -1.69 10.11 22.35 0.23 -1.47 16 26 C -0.11 -1.64 10.16 22.51 0.23 -1.41 16 27 C 0.04 0.85 7.27 22.47 0.16 1.02 16 28 F -0.13 -2.83 16.49 44.97 0.74 -2.09 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.34 10.23 7.28 -89.69 -0.65 9.57 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.39 14.82 5.76 -92.71 -0.53 14.28 16 38 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.41 6.21 8.15 -92.71 -0.76 5.45 16 40 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.14 2.04 7.63 -2.39 -0.02 2.02 16 42 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 44 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -90.89 382.56 -0.18 -91.08 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.93 Total: 42.27 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 6.45 Total: 22.72 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -8.24 Total: -139.31 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -0.10 Total: -54.93 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.74 Total: -2.09 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.27 kcal Total: -90.89 -0.18 -91.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483160676.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.386 kcal (2) G-P(sol) polarization free energy of solvation -90.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds