Wall clock time and date at job start Tue Mar 31 2020 20:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 N 1.46502 * 109.47064 * 240.00228 * 2 1 3 5 5 C 1.34776 * 120.00502 * 84.99714 * 4 2 1 6 6 O 1.21282 * 119.99310 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00171 * 180.27732 * 5 4 2 8 8 S 1.80999 * 109.46742 * 179.72528 * 7 5 4 9 9 C 1.76201 * 99.99688 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00420 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99731 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47075 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46906 * 119.99942 * 13 11 9 16 16 H 1.48499 * 109.47341 * 239.99983 * 13 11 9 17 17 C 1.52999 * 109.47565 * 119.99787 * 2 1 3 18 18 C 1.53941 * 113.74244 * 281.68142 * 17 2 1 19 19 N 1.47580 * 86.11580 * 222.04226 * 18 17 2 20 20 C 1.34777 * 134.48980 * 204.63662 * 19 18 17 21 21 O 1.21285 * 119.99749 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00216 * 0.02562 * 20 19 18 23 23 C 1.54636 * 111.03350 * 295.32693 * 22 20 19 24 24 C 1.51169 * 104.69426 * 217.36155 * 23 22 20 25 25 C 1.30529 * 111.11755 * 16.38507 * 24 23 22 26 26 C 1.51100 * 111.10312 * 0.03401 * 25 24 23 27 27 C 1.47576 * 91.01503 * 24.64096 * 19 18 17 28 28 H 1.09006 * 109.46931 * 300.03029 * 1 2 3 29 29 H 1.09002 * 109.47338 * 60.03138 * 1 2 3 30 30 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99827 * 264.99913 * 4 2 1 32 32 H 1.09003 * 109.47093 * 299.72241 * 7 5 4 33 33 H 1.08994 * 109.47153 * 59.72350 * 7 5 4 34 34 H 0.97007 * 120.00284 * 179.97438 * 12 11 9 35 35 H 1.09003 * 112.94067 * 53.41350 * 17 2 1 36 36 H 1.09000 * 113.76966 * 336.34454 * 18 17 2 37 37 H 1.09001 * 113.76902 * 107.74185 * 18 17 2 38 38 H 1.08993 * 110.91501 * 59.29445 * 22 20 19 39 39 H 1.08999 * 110.39145 * 336.15070 * 23 22 20 40 40 H 1.09010 * 110.38545 * 98.52861 * 23 22 20 41 41 H 1.07999 * 124.43233 * 196.40536 * 24 23 22 42 42 H 1.07998 * 124.44414 * 180.02562 * 25 24 23 43 43 H 1.08997 * 110.38242 * 224.74813 * 26 25 24 44 44 H 1.09003 * 110.48478 * 102.42446 * 26 25 24 45 45 H 1.08999 * 113.77167 * 221.05763 * 27 19 18 46 46 H 1.09000 * 113.87333 * 89.67093 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8589 1.1586 -2.4115 7 6 2.6433 -0.7302 -3.5892 8 16 2.6979 0.4313 -4.9763 9 6 3.2956 -0.6354 -6.2450 10 1 3.5065 -1.6714 -6.0247 11 6 3.4965 -0.1438 -7.5275 12 7 3.2400 1.1190 -7.7959 13 14 4.1308 -1.2744 -8.8724 14 1 4.3388 -2.6360 -8.3172 15 1 3.1387 -1.3365 -9.9756 16 1 5.4185 -0.7498 -9.3937 17 6 2.0400 -0.7212 1.2492 18 6 1.9777 0.1342 2.5276 19 7 3.3099 -0.4178 2.8415 20 6 4.0083 -0.6112 3.9779 21 8 5.1171 -1.1005 3.9323 22 6 3.4115 -0.2194 5.3051 23 6 3.2016 1.3103 5.3894 24 6 3.5318 1.6643 6.8214 25 6 4.1937 0.7014 7.4033 26 6 4.4162 -0.4551 6.4567 27 6 3.5701 -0.6730 1.4115 28 1 -0.3633 0.5143 0.8898 29 1 -0.3634 0.5133 -0.8903 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6318 -1.1527 32 1 3.6434 -1.1224 -3.4041 33 1 1.9695 -1.5524 -3.8300 34 1 3.3807 1.4627 -8.6921 35 1 1.6176 -1.7192 1.3659 36 1 1.9804 1.2077 2.3385 37 1 1.1989 -0.1742 3.2250 38 1 2.4782 -0.7530 5.4847 39 1 3.8770 1.8246 4.7057 40 1 2.1657 1.5644 5.1639 41 1 3.2560 2.5922 7.3003 42 1 4.5373 0.7280 8.4268 43 1 4.2059 -1.4006 6.9565 44 1 5.4379 -0.4462 6.0770 45 1 4.0627 -1.6258 1.2177 46 1 4.0408 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487149357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:54 Heat of formation + Delta-G solvation = -25.560047 kcal Electronic energy + Delta-G solvation = -26027.388838 eV Core-core repulsion = 22237.549467 eV Total energy + Delta-G solvation = -3789.839370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07539 -39.69254 -38.74189 -37.45277 -35.05440 -32.44274 -31.73380 -30.60120 -28.91893 -28.61420 -28.23548 -26.50448 -25.49888 -24.11586 -22.12596 -20.65909 -20.32870 -19.32562 -19.14005 -17.88662 -17.57436 -16.90639 -16.54232 -16.44960 -16.04007 -15.15739 -15.08118 -14.81570 -14.61493 -14.18075 -13.82630 -13.74263 -13.25926 -13.18675 -13.06263 -12.87925 -12.74093 -12.59970 -12.53646 -12.39001 -12.15181 -12.02417 -11.83658 -11.64846 -11.54092 -11.23719 -11.07956 -11.04528 -11.03006 -10.76239 -10.05912 -9.81679 -9.43077 -9.33583 -9.10552 -9.08240 -8.95207 -8.25126 -6.51504 -6.23245 -3.93680 1.81805 2.25302 2.42471 2.95387 3.04994 3.20823 3.26450 3.30900 3.59654 3.86727 4.04393 4.07646 4.19147 4.26404 4.37943 4.57543 4.68197 4.79268 4.81047 4.93906 5.04287 5.08972 5.11890 5.12274 5.19753 5.21433 5.23010 5.29428 5.32824 5.37457 5.46942 5.50349 5.56589 5.63777 5.71621 5.77122 5.86754 5.94050 6.07626 6.11784 6.13787 6.42354 6.58661 7.31248 7.58743 7.65726 7.80866 8.34142 8.57053 9.22512 10.84221 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.001834 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.539945 B =15266.661819 C =15726.529590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.092 0.908 4 N -0.735 5.735 5 C 0.535 3.465 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.131 4.131 18 C 0.113 3.887 19 N -0.644 5.644 20 C 0.545 3.455 21 O -0.538 6.538 22 C -0.111 4.111 23 C -0.088 4.088 24 C -0.170 4.170 25 C -0.161 4.161 26 C -0.089 4.089 27 C 0.113 3.887 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -3.696 29.164 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.110 0.890 4 N -0.389 5.389 5 C 0.321 3.679 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.151 4.151 18 C -0.011 4.011 19 N -0.380 5.380 20 C 0.335 3.665 21 O -0.414 6.414 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.188 4.188 25 C -0.179 4.179 26 C -0.126 4.126 27 C -0.009 4.009 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.474 -1.881 29.095 29.497 hybrid contribution 0.784 -2.470 -0.768 2.703 sum -3.690 -4.351 28.327 28.896 Atomic orbital electron populations 1.22174 0.94906 1.02243 1.02842 1.20824 0.94349 0.97278 0.82767 0.88997 1.46044 1.69505 1.13973 1.09397 1.20302 0.76685 0.87210 0.83720 1.90702 1.48187 1.15758 1.84398 1.23539 1.03743 1.04866 0.98350 1.85384 1.86499 1.12933 0.98579 1.22911 1.51025 0.98200 0.96215 0.90869 1.24991 0.95075 0.95540 0.97980 1.70023 1.45600 1.13254 1.21398 0.86120 0.78522 0.80151 0.80722 1.19616 1.20567 1.20561 1.23494 0.96221 1.00938 0.94436 1.23248 0.84338 0.99044 0.94445 1.49988 1.19203 1.62698 1.06097 1.20088 0.84452 0.77705 0.84302 1.90717 1.19467 1.44584 1.86664 1.22113 1.00666 0.98050 0.92387 1.21319 1.02345 0.92937 0.95925 1.23229 1.00583 0.99478 0.95532 1.23320 0.99216 0.96044 0.99312 1.21303 1.00358 0.97800 0.93130 1.23215 0.95760 1.02699 0.79202 0.91821 0.91384 0.92420 0.76812 0.89215 0.89223 0.92232 0.87332 0.88932 0.89529 0.87732 0.90312 0.90305 0.85436 0.85460 0.90638 0.88769 0.89758 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.44 37.15 0.35 -1.05 16 2 C 0.15 1.41 2.29 -67.93 -0.16 1.25 16 3 H 0.09 1.01 7.48 -51.93 -0.39 0.63 16 4 N -0.73 -8.37 4.94 -53.81 -0.27 -8.64 16 5 C 0.53 9.15 7.81 -10.99 -0.09 9.07 16 6 O -0.52 -10.90 15.52 5.56 0.09 -10.82 16 7 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 9 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 13 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 C -0.13 -0.85 3.36 -89.70 -0.30 -1.15 16 18 C 0.11 0.63 7.77 -2.98 -0.02 0.60 16 19 N -0.64 -5.57 3.60 -178.39 -0.64 -6.22 16 20 C 0.54 5.76 7.29 -10.99 -0.08 5.68 16 21 O -0.54 -7.93 16.26 5.55 0.09 -7.84 16 22 C -0.11 -0.83 3.32 -90.05 -0.30 -1.13 16 23 C -0.09 -0.57 6.05 -26.79 -0.16 -0.73 16 24 C -0.17 -1.07 10.78 -35.66 -0.38 -1.45 16 25 C -0.16 -1.06 10.78 -35.70 -0.38 -1.45 16 26 C -0.09 -0.70 6.16 -26.83 -0.17 -0.87 16 27 C 0.11 0.98 8.27 -2.98 -0.02 0.96 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 3.50 8.60 -40.82 -0.35 3.15 16 32 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 33 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 40 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.94 7.00 -51.93 -0.36 0.58 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -36.41 398.30 -9.91 -46.33 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.39 Total: -0.22 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.30 Total: -5.83 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.17 Total: -40.08 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.41 -9.91 -46.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487149357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.768 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds