Wall clock time and date at job start Tue Mar 31 2020 20:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 N 1.46502 * 109.47064 * 240.00228 * 2 1 3 5 5 C 1.34776 * 120.00502 * 84.99714 * 4 2 1 6 6 O 1.21282 * 119.99310 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00171 * 180.27732 * 5 4 2 8 8 S 1.80999 * 109.46742 * 179.72528 * 7 5 4 9 9 C 1.76201 * 99.99688 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00420 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31622 * 119.99731 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00083 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47075 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46906 * 119.99942 * 13 11 9 16 16 H 1.48499 * 109.47341 * 239.99983 * 13 11 9 17 17 C 1.52999 * 109.47565 * 119.99787 * 2 1 3 18 18 C 1.53941 * 113.74244 * 281.68142 * 17 2 1 19 19 N 1.47580 * 86.11580 * 222.04226 * 18 17 2 20 20 C 1.34777 * 134.48980 * 204.63662 * 19 18 17 21 21 O 1.21285 * 119.99749 * 180.02562 * 20 19 18 22 22 C 1.50700 * 120.00216 * 0.02562 * 20 19 18 23 23 C 1.54636 * 111.03350 * 295.32693 * 22 20 19 24 24 C 1.51169 * 104.69426 * 217.36155 * 23 22 20 25 25 C 1.30529 * 111.11755 * 16.38507 * 24 23 22 26 26 C 1.51100 * 111.10312 * 0.03401 * 25 24 23 27 27 C 1.47576 * 91.01503 * 24.64096 * 19 18 17 28 28 H 1.09006 * 109.46931 * 300.03029 * 1 2 3 29 29 H 1.09002 * 109.47338 * 60.03138 * 1 2 3 30 30 H 1.09000 * 109.47460 * 180.02562 * 1 2 3 31 31 H 0.97002 * 119.99827 * 264.99913 * 4 2 1 32 32 H 1.09003 * 109.47093 * 299.72241 * 7 5 4 33 33 H 1.08994 * 109.47153 * 59.72350 * 7 5 4 34 34 H 0.97007 * 120.00284 * 179.97438 * 12 11 9 35 35 H 1.09003 * 112.94067 * 53.41350 * 17 2 1 36 36 H 1.09000 * 113.76966 * 336.34454 * 18 17 2 37 37 H 1.09001 * 113.76902 * 107.74185 * 18 17 2 38 38 H 1.08993 * 110.91501 * 59.29445 * 22 20 19 39 39 H 1.08999 * 110.39145 * 336.15070 * 23 22 20 40 40 H 1.09010 * 110.38545 * 98.52861 * 23 22 20 41 41 H 1.07999 * 124.43233 * 196.40536 * 24 23 22 42 42 H 1.07998 * 124.44414 * 180.02562 * 25 24 23 43 43 H 1.08997 * 110.38242 * 224.74813 * 26 25 24 44 44 H 1.09003 * 110.48478 * 102.42446 * 26 25 24 45 45 H 1.08999 * 113.77167 * 221.05763 * 27 19 18 46 46 H 1.09000 * 113.87333 * 89.67093 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8589 1.1586 -2.4115 7 6 2.6433 -0.7302 -3.5892 8 16 2.6979 0.4313 -4.9763 9 6 3.2956 -0.6354 -6.2450 10 1 3.5065 -1.6714 -6.0247 11 6 3.4965 -0.1438 -7.5275 12 7 3.2400 1.1190 -7.7959 13 14 4.1308 -1.2744 -8.8724 14 1 4.3388 -2.6360 -8.3172 15 1 3.1387 -1.3365 -9.9756 16 1 5.4185 -0.7498 -9.3937 17 6 2.0400 -0.7212 1.2492 18 6 1.9777 0.1342 2.5276 19 7 3.3099 -0.4178 2.8415 20 6 4.0083 -0.6112 3.9779 21 8 5.1171 -1.1005 3.9323 22 6 3.4115 -0.2194 5.3051 23 6 3.2016 1.3103 5.3894 24 6 3.5318 1.6643 6.8214 25 6 4.1937 0.7014 7.4033 26 6 4.4162 -0.4551 6.4567 27 6 3.5701 -0.6730 1.4115 28 1 -0.3633 0.5143 0.8898 29 1 -0.3634 0.5133 -0.8903 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6318 -1.1527 32 1 3.6434 -1.1224 -3.4041 33 1 1.9695 -1.5524 -3.8300 34 1 3.3807 1.4627 -8.6921 35 1 1.6176 -1.7192 1.3659 36 1 1.9804 1.2077 2.3385 37 1 1.1989 -0.1742 3.2250 38 1 2.4782 -0.7530 5.4847 39 1 3.8770 1.8246 4.7057 40 1 2.1657 1.5644 5.1639 41 1 3.2560 2.5922 7.3003 42 1 4.5373 0.7280 8.4268 43 1 4.2059 -1.4006 6.9565 44 1 5.4379 -0.4462 6.0770 45 1 4.0627 -1.6258 1.2177 46 1 4.0408 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487149357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:53 Heat of formation + Delta-G solvation = -50.274607 kcal Electronic energy + Delta-G solvation = -26028.460542 eV Core-core repulsion = 22237.549467 eV Total energy + Delta-G solvation = -3790.911074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79328 -40.70730 -39.64303 -38.21246 -36.11089 -34.58325 -32.81337 -31.34429 -30.03694 -29.33070 -28.86862 -27.66450 -27.09375 -24.88265 -22.84477 -21.59140 -21.35040 -19.92514 -19.80446 -19.68315 -18.24880 -17.80015 -17.73833 -17.22059 -16.88175 -16.81735 -16.38008 -16.14353 -15.75302 -15.39689 -14.79003 -14.71238 -14.49027 -14.33735 -13.88492 -13.79678 -13.63460 -13.38635 -13.18947 -13.15489 -13.10578 -12.99166 -12.91426 -12.74784 -12.69102 -12.54401 -12.17964 -12.08416 -11.92954 -11.75076 -11.68604 -11.15787 -10.95564 -10.79172 -10.25884 -10.07153 -9.83905 -9.78659 -8.65072 -8.34856 -6.11945 1.28163 1.33920 1.40885 1.47570 1.49569 1.58629 1.67071 1.75818 2.25052 2.30276 2.99473 3.23652 3.30194 3.41411 3.52241 3.69603 3.75898 3.97084 4.07064 4.16707 4.17562 4.32975 4.33663 4.41924 4.46512 4.51048 4.54337 4.55350 4.60044 4.64347 4.73451 4.75549 4.80660 4.86347 4.91299 5.04848 5.06336 5.17716 5.22768 5.41386 5.42497 5.57726 5.59862 5.96113 6.20150 6.55874 6.62883 7.04049 7.06997 7.30949 8.74489 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.001834 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.539945 B =15266.661819 C =15726.529590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.072 0.928 4 N -0.710 5.710 5 C 0.538 3.462 6 O -0.563 6.563 7 C -0.132 4.132 8 S -0.150 6.150 9 C -0.546 4.546 10 H 0.082 0.918 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.257 1.257 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.109 4.109 18 C 0.117 3.883 19 N -0.644 5.644 20 C 0.537 3.463 21 O -0.592 6.592 22 C -0.105 4.105 23 C -0.087 4.087 24 C -0.169 4.169 25 C -0.171 4.171 26 C -0.094 4.094 27 C 0.100 3.900 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -5.423 30.949 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.090 0.910 4 N -0.363 5.363 5 C 0.323 3.677 6 O -0.441 6.441 7 C -0.283 4.283 8 S 0.077 5.923 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.181 1.181 15 H -0.199 1.199 16 H -0.200 1.200 17 C -0.128 4.128 18 C -0.005 4.005 19 N -0.378 5.378 20 C 0.329 3.671 21 O -0.473 6.473 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.186 4.186 25 C -0.188 4.188 26 C -0.131 4.131 27 C -0.023 4.023 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.252 0.748 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.024 -3.638 30.918 31.709 hybrid contribution 1.248 -1.944 -1.215 2.610 sum -4.777 -5.582 29.704 30.599 Atomic orbital electron populations 1.22133 0.93693 1.03245 1.02561 1.20981 0.95145 0.96491 0.82525 0.90952 1.45812 1.67562 1.14598 1.08360 1.19938 0.76616 0.86538 0.84578 1.90692 1.50586 1.17644 1.85167 1.23397 1.05455 1.03239 0.96251 1.85533 1.86845 1.17357 1.02587 1.23247 1.50902 0.98490 0.96765 0.90014 1.26103 0.95090 0.97181 1.00751 1.70182 1.46916 1.15466 1.22161 0.84927 0.77836 0.78244 0.77080 1.18107 1.19870 1.20039 1.23369 0.94051 1.02029 0.93360 1.23498 0.83453 0.99380 0.94169 1.50096 1.20224 1.61974 1.05520 1.20686 0.83899 0.76888 0.85665 1.90689 1.21894 1.47171 1.87536 1.22152 1.01134 0.99126 0.90208 1.21350 1.03478 0.91773 0.95788 1.23448 0.99979 0.99893 0.95304 1.23418 0.99814 0.95722 0.99883 1.21303 0.98993 0.98982 0.93830 1.23271 0.97448 1.01873 0.79662 0.88859 0.94954 0.90726 0.74833 0.87550 0.87299 0.92016 0.84920 0.88141 0.85990 0.85154 0.91958 0.87717 0.83675 0.84134 0.90009 0.91778 0.90335 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.44 71.98 0.68 -1.61 16 2 C 0.15 2.49 2.29 44.99 0.10 2.60 16 3 H 0.07 1.54 7.48 -2.38 -0.02 1.52 16 4 N -0.71 -14.99 4.94 -442.54 -2.19 -17.18 16 5 C 0.54 18.28 7.81 87.66 0.68 18.97 16 6 O -0.56 -24.41 15.52 -3.04 -0.05 -24.46 16 7 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 8 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 9 C -0.55 -31.04 9.50 67.96 0.65 -30.39 16 10 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 11 C 0.01 0.77 5.49 84.86 0.47 1.23 16 12 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 13 Si 1.00 43.59 29.55 68.60 2.03 45.61 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 C -0.11 -1.07 3.36 -10.14 -0.03 -1.10 16 18 C 0.12 0.87 7.77 86.48 0.67 1.55 16 19 N -0.64 -10.04 3.60 -836.69 -3.01 -13.05 16 20 C 0.54 11.02 7.29 87.66 0.64 11.66 16 21 O -0.59 -18.12 16.26 -3.05 -0.05 -18.17 16 22 C -0.11 -1.39 3.32 -10.43 -0.03 -1.43 16 23 C -0.09 -0.92 6.05 30.55 0.18 -0.73 16 24 C -0.17 -1.74 10.78 26.28 0.28 -1.45 16 25 C -0.17 -2.01 10.78 26.26 0.28 -1.73 16 26 C -0.09 -1.44 6.16 30.53 0.19 -1.25 16 27 C 0.10 1.63 8.27 86.48 0.72 2.35 16 28 H 0.09 0.82 8.09 -2.38 -0.02 0.80 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.41 6.16 8.60 -92.71 -0.80 5.36 16 32 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 34 H 0.27 15.36 8.31 -92.70 -0.77 14.58 16 35 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.67 8.03 -2.39 -0.02 0.65 16 37 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.89 7.88 -2.39 -0.02 0.87 16 40 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.38 7.00 -2.39 -0.02 1.36 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 Total: -1.00 -84.84 398.30 1.95 -82.90 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.18 Total: 15.17 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.91 Total: -5.95 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -4.91 Total: -85.72 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.10 Total: -42.62 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -84.84 1.95 -82.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487149357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.621 kcal (2) G-P(sol) polarization free energy of solvation -84.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds