Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47195 * 2 1 4 4 N 1.46503 * 109.46820 * 120.00207 * 2 1 3 5 5 C 1.34774 * 119.99910 * 274.99429 * 4 2 1 6 6 O 1.21283 * 119.99893 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99904 * 179.97438 * 5 4 2 8 8 O 1.42902 * 109.46922 * 180.02562 * 7 5 4 9 9 C 1.36235 * 117.00007 * 180.02562 * 8 7 5 10 10 C 1.38669 * 122.58684 * 179.97438 * 9 8 7 11 11 C 1.33427 * 114.88365 * 179.97438 * 10 9 8 12 12 S 1.75867 * 109.66085 * 359.97438 * 11 10 9 13 13 C 1.33628 * 122.58480 * 359.71145 * 9 8 7 14 14 C 1.53004 * 109.47114 * 240.00025 * 2 1 3 15 15 H 1.08997 * 109.49846 * 185.06546 * 14 2 1 16 16 C 1.53037 * 109.49820 * 65.00236 * 14 2 1 17 17 C 1.53039 * 109.53760 * 178.68413 * 16 14 2 18 18 C 1.53192 * 109.31540 * 61.36495 * 17 16 14 19 19 N 1.46930 * 108.77447 * 305.36614 * 18 17 16 20 20 C 1.36939 * 120.63070 * 233.58681 * 19 18 17 21 21 H 1.07998 * 119.99999 * 151.83050 * 20 19 18 22 22 C 1.38811 * 119.99568 * 331.83318 * 20 19 18 23 23 N 1.31618 * 120.00284 * 343.07443 * 22 20 19 24 24 Si 1.86795 * 119.99748 * 163.08151 * 22 20 19 25 25 H 1.48501 * 109.47342 * 89.99623 * 24 22 20 26 26 H 1.48497 * 109.47328 * 209.99406 * 24 22 20 27 27 H 1.48496 * 109.47337 * 329.99679 * 24 22 20 28 28 C 1.46929 * 118.73852 * 53.60709 * 19 18 17 29 29 H 1.09000 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46962 * 300.00301 * 1 2 3 31 31 H 1.09002 * 109.46696 * 60.00033 * 1 2 3 32 32 H 0.97001 * 119.99985 * 95.00167 * 4 2 1 33 33 H 1.08998 * 109.47328 * 300.00591 * 7 5 4 34 34 H 1.09001 * 109.46731 * 60.00795 * 7 5 4 35 35 H 1.08001 * 122.55853 * 359.97438 * 10 9 8 36 36 H 1.07996 * 125.17072 * 179.97438 * 11 10 9 37 37 H 1.08004 * 125.19414 * 359.97438 * 13 9 8 38 38 H 1.09006 * 109.46036 * 298.70410 * 16 14 2 39 39 H 1.08995 * 109.45909 * 58.67493 * 16 14 2 40 40 H 1.09004 * 109.49802 * 181.31244 * 17 16 14 41 41 H 1.08996 * 109.49752 * 301.38092 * 17 16 14 42 42 H 1.09003 * 109.58759 * 65.14764 * 18 17 16 43 43 H 1.08995 * 109.58843 * 185.57900 * 18 17 16 44 44 H 0.97002 * 119.99887 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.58283 * 186.60614 * 28 19 18 46 46 H 1.09000 * 109.58558 * 66.17671 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1583 2.4117 7 6 2.6488 -0.7289 3.5877 8 8 2.6965 0.1892 4.6817 9 6 3.1320 -0.2961 5.8779 10 6 3.2247 0.4926 7.0147 11 6 3.6691 -0.1400 8.1022 12 16 3.9994 -1.8232 7.7141 13 6 3.4979 -1.5701 6.0475 14 6 2.0401 -0.7213 -1.2493 15 1 3.1262 -0.8008 -1.2055 16 6 1.6356 0.0686 -2.4961 17 6 2.1734 -0.6346 -3.7443 18 6 1.5613 -2.0357 -3.8400 19 7 1.8219 -2.7524 -2.5841 20 6 2.4218 -3.9833 -2.5947 21 1 3.0107 -4.3044 -1.7483 22 6 2.2729 -4.8184 -3.6936 23 7 1.3124 -4.5943 -4.5651 24 14 3.4356 -6.2602 -3.9352 25 1 2.8818 -7.4613 -3.2600 26 1 3.5888 -6.5348 -5.3865 27 1 4.7606 -5.9309 -3.3512 28 6 1.4264 -2.1233 -1.3165 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1526 33 1 1.9759 -1.5507 3.8325 34 1 3.6479 -1.1215 3.3986 35 1 2.9575 1.5390 7.0195 36 1 3.8054 0.3128 9.0731 37 1 3.4876 -2.3283 5.2784 38 1 0.5485 0.1271 -2.5521 39 1 2.0508 1.0748 -2.4390 40 1 1.9049 -0.0592 -4.6303 41 1 3.2584 -0.7150 -3.6776 42 1 0.4858 -1.9546 -3.9979 43 1 2.0149 -2.5768 -4.6703 44 1 1.2082 -5.1780 -5.3327 45 1 1.7910 -2.7223 -0.4820 46 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491296292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = -19.102560 kcal Electronic energy + Delta-G solvation = -26893.038379 eV Core-core repulsion = 23103.479026 eV Total energy + Delta-G solvation = -3789.559353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48850 -39.53000 -38.02260 -36.18304 -35.19181 -33.11857 -31.38548 -30.49925 -29.41724 -28.84384 -27.94219 -25.35016 -24.34033 -23.46550 -22.24135 -20.91043 -20.25631 -19.98668 -18.78966 -18.50994 -17.34868 -17.02782 -16.60509 -16.54407 -15.75857 -14.94573 -14.80032 -14.48986 -14.39710 -14.30415 -13.89477 -13.56451 -13.46769 -13.21844 -13.03117 -12.96975 -12.48501 -12.40779 -12.30222 -12.12308 -11.84113 -11.66477 -11.24586 -11.21467 -11.04111 -10.95011 -10.61363 -10.52254 -10.24464 -10.16552 -9.94909 -9.86711 -9.63351 -9.43865 -9.17689 -9.01926 -8.50894 -8.31505 -6.70736 -5.84019 -3.26929 0.64630 1.28502 1.64602 2.39894 2.46509 2.51846 3.32549 3.40389 3.41845 3.55432 4.43098 4.49063 4.57894 4.74805 4.79783 4.92487 4.99835 5.07430 5.18505 5.35242 5.37872 5.53389 5.54804 5.60227 5.64969 5.67258 5.82129 5.86434 5.96857 6.08917 6.18311 6.21511 6.29963 6.44298 6.53472 6.57225 6.66754 6.73377 6.83242 6.91335 6.93955 7.36236 7.46901 7.63191 7.73400 8.14511 8.39631 9.15755 9.79410 10.36193 11.24156 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.002368 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.510018 B =11820.132732 C =13589.016946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 H 0.083 0.917 4 N -0.716 5.716 5 C 0.516 3.484 6 O -0.523 6.523 7 C 0.041 3.959 8 O -0.278 6.278 9 C 0.117 3.883 10 C -0.140 4.140 11 C -0.188 4.188 12 S 0.118 5.882 13 C -0.326 4.326 14 C -0.113 4.113 15 H 0.072 0.928 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.170 3.830 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.151 3.849 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.404 0.596 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.086 0.914 44 H 0.254 0.746 45 H 0.046 0.954 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 7.967 19.855 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 H 0.101 0.899 4 N -0.369 5.369 5 C 0.300 3.700 6 O -0.398 6.398 7 C -0.038 4.038 8 O -0.191 6.191 9 C 0.061 3.939 10 C -0.171 4.171 11 C -0.324 4.324 12 S 0.378 5.622 13 C -0.462 4.462 14 C -0.134 4.134 15 H 0.091 0.909 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.024 3.976 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.239 0.761 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.169 0.831 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.443 7.669 20.477 22.136 hybrid contribution 0.219 -0.372 -1.107 1.188 sum 3.662 7.297 19.370 21.021 Atomic orbital electron populations 1.22270 0.95264 1.02821 1.02035 1.21074 0.94267 0.96764 0.83125 0.89892 1.46040 1.67105 1.14464 1.09301 1.19920 0.78541 0.87457 0.84048 1.90735 1.48912 1.15586 1.84614 1.22500 1.03076 0.92508 0.85675 1.86199 1.81170 1.36505 1.15229 1.17908 0.97789 0.91407 0.86833 1.19493 1.05382 1.02102 0.90158 1.25531 1.06647 0.97512 1.02717 1.84206 1.66024 1.08798 1.03168 1.25398 1.18168 1.00258 1.02342 1.21967 1.00943 0.98064 0.92408 0.90919 1.21421 1.00563 0.97228 0.94656 1.22180 1.00603 0.99582 0.95796 1.20790 0.96610 0.88006 0.90183 1.44021 1.69915 1.17470 0.99933 1.19120 1.23533 0.92040 1.03740 0.91868 1.25040 0.97375 0.97654 0.99479 1.70032 1.30213 1.39485 1.14739 0.86330 0.80949 0.82500 0.77170 1.21402 1.21537 1.20511 1.21002 0.96213 0.90302 0.90052 0.91489 0.92841 0.91266 0.76112 0.88932 0.88942 0.83086 0.80997 0.81431 0.92193 0.93491 0.93192 0.92805 0.96422 0.89620 0.93596 0.93510 0.95596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.76 37.16 0.33 -1.93 16 2 C 0.15 2.12 2.35 -67.92 -0.16 1.96 16 3 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.72 -8.88 5.01 -53.80 -0.27 -9.15 16 5 C 0.52 6.90 7.87 -10.99 -0.09 6.82 16 6 O -0.52 -9.14 16.16 -14.36 -0.23 -9.37 16 7 C 0.04 0.43 5.35 36.01 0.19 0.62 16 8 O -0.28 -3.54 9.74 -40.40 -0.39 -3.93 16 9 C 0.12 1.26 6.64 -41.04 -0.27 0.99 16 10 C -0.14 -1.29 10.17 -41.10 -0.42 -1.71 16 11 C -0.19 -1.38 11.22 29.05 0.33 -1.06 16 12 S 0.12 0.91 23.34 -107.50 -2.51 -1.60 16 13 C -0.33 -2.99 10.09 29.12 0.29 -2.69 16 14 C -0.11 -1.78 2.27 -90.50 -0.21 -1.99 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.10 -1.60 4.89 -26.69 -0.13 -1.73 16 17 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 18 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 19 N -0.59 -13.98 2.99 -172.31 -0.52 -14.50 16 20 C -0.25 -6.67 9.58 -15.06 -0.14 -6.81 16 21 H 0.06 1.61 7.88 -52.49 -0.41 1.19 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -25.47 11.20 55.49 0.62 -24.84 16 24 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 C 0.15 2.84 5.26 -3.71 -0.02 2.82 16 29 H 0.07 0.93 6.23 -51.93 -0.32 0.60 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.91 6.60 -51.93 -0.34 0.56 16 32 H 0.40 4.34 7.28 -40.82 -0.30 4.04 16 33 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.09 0.75 7.87 -51.93 -0.41 0.35 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.17 1.26 7.02 -52.48 -0.37 0.89 16 38 H 0.06 0.94 6.63 -51.93 -0.34 0.60 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 45 H 0.05 0.83 6.75 -51.93 -0.35 0.48 16 46 H 0.03 0.51 6.06 -51.93 -0.31 0.19 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -31.88 377.19 -10.01 -41.89 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.80 Total: 3.43 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.57 Total: -3.61 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.16 Total: -48.49 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.63 Total: -13.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.88 -10.01 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491296292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.788 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds