Wall clock time and date at job start Tue Mar 31 2020 20:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47335 * 2 1 4 4 N 1.46501 * 109.46939 * 240.00178 * 2 1 3 5 5 C 1.34778 * 120.00159 * 85.00315 * 4 2 1 6 6 O 1.21280 * 120.00053 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99772 * 179.97438 * 5 4 2 8 8 O 1.42901 * 109.46855 * 179.97438 * 7 5 4 9 9 C 1.36236 * 116.99905 * 179.97438 * 8 7 5 10 10 C 1.38665 * 122.58532 * 180.02562 * 9 8 7 11 11 C 1.33435 * 114.88581 * 179.97438 * 10 9 8 12 12 S 1.75873 * 109.65567 * 359.97438 * 11 10 9 13 13 C 1.33628 * 122.58532 * 359.71595 * 9 8 7 14 14 C 1.53000 * 109.47244 * 120.00127 * 2 1 3 15 15 H 1.08999 * 109.52533 * 59.91368 * 14 2 1 16 16 C 1.53042 * 109.49466 * 299.83533 * 14 2 1 17 17 C 1.53046 * 109.53636 * 178.67869 * 16 14 2 18 18 C 1.52762 * 109.37765 * 61.24308 * 17 16 14 19 19 N 1.46926 * 109.01244 * 305.58424 * 18 17 16 20 20 C 1.36935 * 120.63260 * 233.59040 * 19 18 17 21 21 H 1.07998 * 119.99964 * 152.10930 * 20 19 18 22 22 C 1.38818 * 119.99962 * 332.10221 * 20 19 18 23 23 N 1.31621 * 119.99780 * 335.26864 * 22 20 19 24 24 Si 1.86796 * 119.99944 * 154.99519 * 22 20 19 25 25 H 1.48508 * 109.47191 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47528 * 119.99834 * 24 22 20 27 27 H 1.48507 * 109.46927 * 240.00155 * 24 22 20 28 28 C 1.46923 * 118.73306 * 53.31086 * 19 18 17 29 29 H 1.09002 * 109.46842 * 300.00088 * 1 2 3 30 30 H 1.09002 * 109.47165 * 59.99760 * 1 2 3 31 31 H 1.08996 * 109.47335 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99791 * 264.99882 * 4 2 1 33 33 H 1.08996 * 109.47261 * 299.99663 * 7 5 4 34 34 H 1.09008 * 109.47328 * 59.99802 * 7 5 4 35 35 H 1.07996 * 122.56093 * 359.97438 * 10 9 8 36 36 H 1.07994 * 125.17196 * 179.97438 * 11 10 9 37 37 H 1.08000 * 125.20049 * 359.97438 * 13 9 8 38 38 H 1.08990 * 109.46523 * 298.69951 * 16 14 2 39 39 H 1.09002 * 109.46336 * 58.66496 * 16 14 2 40 40 H 1.08999 * 109.49604 * 181.31494 * 17 16 14 41 41 H 1.09000 * 109.50123 * 301.38654 * 17 16 14 42 42 H 1.09007 * 109.50585 * 185.70374 * 18 17 16 43 43 H 1.09001 * 109.43315 * 65.42700 * 18 17 16 44 44 H 0.97000 * 120.00039 * 353.97832 * 23 22 20 45 45 H 1.08999 * 109.59145 * 66.43478 * 28 19 18 46 46 H 1.09001 * 109.58720 * 186.85599 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8583 1.1584 -2.4117 7 6 2.6499 -0.7285 -3.5874 8 8 2.6973 0.1896 -4.6815 9 6 3.1337 -0.2955 -5.8774 10 6 3.2263 0.4932 -7.0142 11 6 3.6728 -0.1389 -8.1013 12 16 4.0067 -1.8212 -7.7121 13 6 3.5113 -1.5665 -6.0440 14 6 2.0400 -0.7213 1.2492 15 1 1.6759 -1.7486 1.2509 16 6 1.5336 0.0021 2.4992 17 6 2.0159 -0.7375 3.7492 18 6 3.5432 -0.7417 3.7780 19 7 4.0442 -1.3006 2.5150 20 6 4.9300 -2.3449 2.5167 21 1 4.9566 -3.0318 1.6838 22 6 5.7938 -2.5205 3.5891 23 7 6.1262 -1.4930 4.3415 24 14 6.4782 -4.2165 3.9690 25 1 5.9493 -5.1955 2.9855 26 1 7.9604 -4.1822 3.8858 27 1 6.0684 -4.6204 5.3381 28 6 3.5719 -0.7217 1.2499 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 3.6492 -1.1203 -3.3979 34 1 1.9776 -1.5509 -3.8325 35 1 2.9575 1.5391 -7.0195 36 1 3.8086 0.3138 -9.0723 37 1 3.5114 -2.3221 -5.2723 38 1 1.9182 1.0218 2.5096 39 1 0.4439 0.0254 2.4889 40 1 1.6354 -0.2352 4.6386 41 1 1.6516 -1.7646 3.7276 42 1 3.8898 -1.3533 4.6112 43 1 3.9065 0.2792 3.8956 44 1 5.8390 -0.5994 4.0965 45 1 3.9376 0.3009 1.1568 46 1 3.9375 -1.3199 0.4153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491296294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:05 Heat of formation + Delta-G solvation = -43.910419 kcal Electronic energy + Delta-G solvation = -26985.192709 eV Core-core repulsion = 23194.557607 eV Total energy + Delta-G solvation = -3790.635102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46110 -40.53952 -39.48564 -37.12597 -36.70404 -34.88870 -32.76555 -32.28736 -30.24675 -30.03650 -29.27499 -27.03709 -25.15559 -24.33453 -23.79552 -22.20719 -21.62392 -20.75008 -20.70669 -19.40494 -19.27197 -18.19143 -17.81019 -17.47614 -16.98233 -16.31487 -16.12772 -15.68664 -15.45361 -15.38565 -15.32395 -15.03586 -14.89775 -14.37858 -14.27259 -14.05897 -13.88729 -13.68985 -13.68067 -13.43884 -12.94441 -12.83943 -12.68157 -12.61084 -12.35109 -12.01025 -11.91864 -11.86279 -11.85366 -11.73431 -11.63995 -11.42303 -11.12914 -10.92942 -10.48063 -10.17458 -9.81817 -8.98920 -8.93751 -8.23934 -5.40329 -0.00219 0.65791 0.99152 1.43689 1.57574 1.58945 1.66813 1.70334 1.82004 2.65320 2.66230 3.20981 3.43013 3.54704 3.80039 3.90603 3.92365 3.96333 4.02258 4.06119 4.22205 4.33686 4.35708 4.39147 4.43154 4.52138 4.63826 4.73863 4.76957 4.84415 4.90680 4.92625 4.95522 5.01162 5.11361 5.16808 5.20835 5.21161 5.25935 5.38388 5.44983 5.55899 5.83615 6.13498 6.38233 6.44502 7.05329 7.10221 7.77857 8.23153 9.00253 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.002532 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.647027 B =11055.355679 C =12916.321581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.063 0.937 4 N -0.707 5.707 5 C 0.515 3.485 6 O -0.570 6.570 7 C 0.045 3.955 8 O -0.309 6.309 9 C 0.093 3.907 10 C -0.168 4.168 11 C -0.176 4.176 12 S 0.142 5.858 13 C -0.333 4.333 14 C -0.093 4.093 15 H 0.082 0.918 16 C -0.099 4.099 17 C -0.125 4.125 18 C 0.151 3.849 19 N -0.616 5.616 20 C -0.350 4.350 21 H 0.056 0.944 22 C -0.080 4.080 23 N -0.946 5.946 24 Si 1.119 2.881 25 H -0.268 1.268 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.156 3.844 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.415 0.585 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.152 0.848 36 H 0.202 0.798 37 H 0.182 0.818 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.043 0.957 43 H -0.005 1.005 44 H 0.252 0.748 45 H -0.005 1.005 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -2.120 -21.474 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 H 0.081 0.919 4 N -0.360 5.360 5 C 0.302 3.698 6 O -0.448 6.448 7 C -0.033 4.033 8 O -0.223 6.223 9 C 0.037 3.963 10 C -0.199 4.199 11 C -0.312 4.312 12 S 0.403 5.597 13 C -0.468 4.468 14 C -0.113 4.113 15 H 0.100 0.900 16 C -0.137 4.137 17 C -0.164 4.164 18 C 0.025 3.975 19 N -0.341 5.341 20 C -0.480 4.480 21 H 0.074 0.926 22 C -0.276 4.276 23 N -0.589 5.589 24 Si 0.943 3.057 25 H -0.193 1.193 26 H -0.222 1.222 27 H -0.216 1.216 28 C 0.031 3.969 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.169 0.831 36 H 0.219 0.781 37 H 0.199 0.801 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.013 0.987 44 H 0.062 0.938 45 H 0.013 0.987 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.978 -3.209 -21.217 23.665 hybrid contribution -0.741 1.932 0.187 2.078 sum -10.719 -1.277 -21.030 23.639 Atomic orbital electron populations 1.22133 0.93335 1.03151 1.02528 1.20889 0.95094 0.96026 0.82797 0.91887 1.45856 1.66690 1.14800 1.08614 1.20460 0.77478 0.86934 0.84974 1.90716 1.51009 1.17662 1.85428 1.22565 1.04612 0.92218 0.83929 1.86140 1.81864 1.37993 1.16296 1.18191 0.99139 0.92452 0.86517 1.19672 1.07056 1.02513 0.90652 1.25906 1.04615 0.97333 1.03328 1.84124 1.65287 1.08715 1.01620 1.25664 1.17316 1.00172 1.03675 1.21733 0.95741 1.00157 0.93671 0.89958 1.21462 1.01252 0.98071 0.92909 1.21843 0.95492 1.00615 0.98444 1.20774 0.93215 0.94522 0.88943 1.44365 1.50160 1.38612 1.00924 1.20281 1.14352 1.04300 1.09046 0.92597 1.27214 0.95847 1.07192 0.97335 1.70844 1.44886 0.99393 1.43756 0.82817 0.75185 0.71454 0.76197 1.19312 1.22188 1.21567 1.20969 0.93068 0.94610 0.88300 0.90036 0.93346 0.90826 0.74828 0.87152 0.85919 0.83054 0.78145 0.80051 0.93146 0.89005 0.90815 0.92276 0.93892 0.98674 0.93773 0.98733 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.14 71.98 0.66 -2.61 16 2 C 0.16 4.09 2.16 44.99 0.10 4.19 16 3 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 4 N -0.71 -16.43 4.48 -442.54 -1.98 -18.41 16 5 C 0.52 13.78 7.87 87.65 0.69 14.47 16 6 O -0.57 -20.70 16.16 16.01 0.26 -20.44 16 7 C 0.04 0.90 5.35 71.23 0.38 1.28 16 8 O -0.31 -8.08 9.74 -77.21 -0.75 -8.83 16 9 C 0.09 2.02 6.64 21.33 0.14 2.16 16 10 C -0.17 -3.14 10.17 21.28 0.22 -2.92 16 11 C -0.18 -2.37 11.22 66.73 0.75 -1.62 16 12 S 0.14 1.96 23.34 -56.49 -1.32 0.64 16 13 C -0.33 -5.75 10.09 66.77 0.67 -5.07 16 14 C -0.09 -2.74 1.97 -10.72 -0.02 -2.77 16 15 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 16 C -0.10 -2.88 4.86 30.62 0.15 -2.73 16 17 C -0.13 -4.33 6.07 30.53 0.19 -4.15 16 18 C 0.15 7.07 4.66 86.22 0.40 7.47 16 19 N -0.62 -30.16 2.86 -699.92 -2.00 -32.15 16 20 C -0.35 -19.05 9.49 84.04 0.80 -18.25 16 21 H 0.06 2.98 7.94 -2.91 -0.02 2.96 16 22 C -0.08 -4.50 4.69 84.86 0.40 -4.11 16 23 N -0.95 -57.96 12.40 21.65 0.27 -57.69 16 24 Si 1.12 50.14 29.99 68.60 2.06 52.20 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 28 C 0.16 6.21 5.56 86.36 0.48 6.69 16 29 H 0.08 1.56 6.41 -2.39 -0.02 1.54 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.41 7.58 8.42 -92.70 -0.78 6.80 16 33 H 0.11 1.81 7.84 -2.39 -0.02 1.79 16 34 H 0.12 1.63 7.87 -2.38 -0.02 1.61 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.18 2.40 7.02 -2.91 -0.02 2.38 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.09 2.06 6.37 -2.39 -0.02 2.05 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 2.29 6.30 -2.38 -0.02 2.28 16 43 H 0.00 -0.23 7.87 -2.39 -0.02 -0.25 16 44 H 0.25 15.89 6.71 -92.71 -0.62 15.27 16 45 H -0.01 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.05 2.10 7.44 -2.39 -0.02 2.08 16 Total: -1.00 -75.44 381.08 2.88 -72.56 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.35 Total: 20.07 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 6.00 Total: -7.95 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.71 Total: -108.25 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.49 Total: -29.27 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.06 Total: 52.20 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.32 Total: 0.64 kcal Total: -75.44 2.88 -72.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491296294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.647 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds