Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47277 * 239.99810 * 2 1 3 5 5 C 1.52997 * 109.47346 * 174.99772 * 4 2 1 6 6 N 1.46493 * 109.47488 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00592 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99572 * 359.97438 * 7 6 5 9 9 C 1.47350 * 120.00446 * 179.72493 * 7 6 5 10 10 C 1.39953 * 120.22484 * 270.27354 * 9 7 6 11 11 F 1.35099 * 120.07032 * 0.02562 * 10 9 7 12 12 C 1.38134 * 119.85203 * 179.97438 * 10 9 7 13 13 C 1.38430 * 120.30320 * 0.02562 * 12 10 9 14 14 C 1.38093 * 120.45121 * 359.97438 * 13 12 10 15 15 C 1.38779 * 120.14367 * 359.76532 * 14 13 12 16 16 N 1.39286 * 120.15680 * 180.25978 * 15 14 13 17 17 C 1.34776 * 119.99744 * 325.24014 * 16 15 14 18 18 N 1.34771 * 120.00203 * 184.51825 * 17 16 15 19 19 O 1.21582 * 120.00004 * 4.51329 * 17 16 15 20 20 N 1.46507 * 109.47024 * 119.99894 * 2 1 3 21 21 C 1.36931 * 120.00070 * 274.99840 * 20 2 1 22 22 H 1.08007 * 119.99943 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99992 * 180.02562 * 21 20 2 24 24 N 1.31614 * 120.00189 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99660 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46982 * 90.00299 * 25 23 21 27 27 H 1.48499 * 109.46859 * 209.99596 * 25 23 21 28 28 H 1.48500 * 109.47564 * 330.00273 * 25 23 21 29 29 H 1.09001 * 109.47287 * 60.00450 * 1 2 3 30 30 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47270 * 299.99663 * 1 2 3 32 32 H 1.08997 * 109.46742 * 54.99987 * 4 2 1 33 33 H 1.08997 * 109.47158 * 294.99913 * 4 2 1 34 34 H 1.09011 * 109.46689 * 59.99982 * 5 4 2 35 35 H 1.09003 * 109.47354 * 300.00541 * 5 4 2 36 36 H 0.97000 * 120.00022 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.84701 * 179.97438 * 12 10 9 38 38 H 1.08002 * 119.77752 * 180.02562 * 13 12 10 39 39 H 1.08006 * 119.92983 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00180 * 145.24317 * 16 15 14 41 41 H 0.97007 * 119.99387 * 359.97438 * 18 17 16 42 42 H 0.96994 * 120.00599 * 180.02562 * 18 17 16 43 43 H 0.96992 * 119.99845 * 95.00285 * 20 2 1 44 44 H 0.97001 * 120.00105 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0533 -1.3044 -2.5095 7 6 5.3742 -1.3407 -2.7746 8 8 6.1606 -0.7993 -2.0214 9 6 5.8659 -2.0411 -3.9742 10 6 6.1956 -3.3998 -3.9111 11 9 6.0634 -4.0752 -2.7486 12 6 6.6554 -4.0489 -5.0405 13 6 6.7921 -3.3614 -6.2342 14 6 6.4705 -2.0207 -6.3106 15 6 6.0017 -1.3515 -5.1888 16 7 5.6721 -0.0004 -5.2668 17 6 6.3797 0.8206 -6.0679 18 7 6.1205 2.1432 -6.0751 19 8 7.2518 0.3682 -6.7840 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8919 1.0404 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.9262 -1.9385 3.4497 25 14 2.7900 0.2701 5.1183 26 1 1.5224 0.1778 5.8863 27 1 3.8950 -0.3225 5.9139 28 1 3.0939 1.6956 4.8340 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0728 -0.4259 35 1 3.8532 0.4370 -1.3573 36 1 3.4260 -1.7360 -3.1104 37 1 6.9101 -5.0972 -4.9917 38 1 7.1520 -3.8774 -7.1121 39 1 6.5808 -1.4924 -7.2462 40 1 4.9334 0.3496 -4.7446 41 1 5.4244 2.5040 -5.5039 42 1 6.6294 2.7340 -6.6519 43 1 2.2490 -1.6317 1.1527 44 1 3.2496 -2.3958 4.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492089746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -74.964978 kcal Electronic energy + Delta-G solvation = -29037.096433 eV Core-core repulsion = 24711.194279 eV Total energy + Delta-G solvation = -4325.902154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.08672 -41.20354 -39.68122 -38.35166 -36.61391 -35.17283 -34.43725 -34.09023 -32.33933 -31.36235 -29.72355 -29.20164 -28.08117 -24.65189 -23.79557 -23.67926 -22.42776 -21.39280 -20.82872 -19.84566 -18.99133 -18.72982 -17.87261 -17.18977 -17.03431 -16.65371 -16.20068 -15.56774 -15.54725 -15.45332 -15.28527 -15.21864 -14.77659 -14.58508 -13.95306 -13.86186 -13.53360 -13.45791 -12.94053 -12.78815 -12.53684 -12.37880 -12.09345 -12.03638 -11.58870 -11.14398 -10.96528 -10.92097 -10.78014 -10.66717 -10.59304 -10.34596 -10.18419 -10.07745 -9.83880 -9.64651 -9.12255 -9.00318 -8.88898 -8.57734 -6.96165 -5.74943 -3.04213 0.62919 0.84939 2.20488 2.46684 2.63629 3.10060 3.28062 3.44974 3.50175 3.52257 3.83819 4.01331 4.44458 4.60160 4.60926 4.73748 4.95663 4.99058 5.21542 5.32962 5.49996 5.53407 5.62758 5.66795 5.72853 5.82072 5.97509 5.99991 6.04837 6.11718 6.20284 6.27672 6.34758 6.39185 6.40149 6.54150 6.57664 6.65260 6.82327 7.02557 7.29455 7.45188 7.71191 8.03124 8.14810 8.43032 9.54479 10.10658 10.44929 11.47538 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002713 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.583500 B =10317.274187 C =11124.851386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.120 3.880 6 N -0.719 5.719 7 C 0.557 3.443 8 O -0.514 6.514 9 C -0.190 4.190 10 C 0.153 3.847 11 F -0.124 7.124 12 C -0.171 4.171 13 C -0.058 4.058 14 C -0.135 4.135 15 C 0.225 3.775 16 N -0.681 5.681 17 C 0.712 3.288 18 N -0.857 5.857 19 O -0.573 6.573 20 N -0.724 5.724 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.411 0.589 41 H 0.402 0.598 42 H 0.420 0.580 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 1.454 -25.491 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.003 4.003 6 N -0.371 5.371 7 C 0.340 3.660 8 O -0.389 6.389 9 C -0.197 4.197 10 C 0.133 3.867 11 F -0.102 7.102 12 C -0.191 4.191 13 C -0.077 4.077 14 C -0.155 4.155 15 C 0.127 3.873 16 N -0.328 5.328 17 C 0.411 3.589 18 N -0.425 5.425 19 O -0.449 6.449 20 N -0.366 5.366 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.247 0.753 41 H 0.230 0.770 42 H 0.254 0.746 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.662 1.542 -25.268 25.579 hybrid contribution -0.705 0.405 1.362 1.586 sum 2.957 1.947 -23.906 24.167 Atomic orbital electron populations 1.22430 0.99126 1.00874 0.99946 1.20141 0.91893 0.95502 0.86009 0.93333 1.22071 0.93600 1.02040 0.99407 1.21549 0.94648 0.97036 0.87033 1.46216 1.06633 1.56577 1.27644 1.17873 0.82944 0.80474 0.84680 1.90884 1.55314 1.44554 1.48122 1.19737 1.11779 0.94274 0.93913 1.17323 0.98919 0.88064 0.82434 1.91594 1.93091 1.79307 1.46181 1.21102 1.04487 1.01654 0.91845 1.21020 0.95935 0.93453 0.97246 1.21339 1.01517 0.94204 0.98461 1.16991 0.96883 0.82184 0.91200 1.42367 1.35763 1.06853 1.47859 1.15812 0.81172 0.81678 0.80276 1.42930 1.43563 1.06438 1.49581 1.90980 1.34556 1.75207 1.44205 1.42457 1.78097 1.10689 1.05345 1.19197 1.36736 0.93839 0.87345 0.91236 1.24731 1.02049 0.95957 0.98057 1.69650 1.50694 1.08692 1.28877 0.86225 0.77236 0.78859 0.84070 1.21818 1.21790 1.20771 0.94616 0.93501 0.92693 0.91903 0.91444 0.89396 0.91601 0.76818 0.83925 0.84142 0.82906 0.75323 0.76988 0.74648 0.78249 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.18 3.20 2.89 -67.93 -0.20 3.00 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.88 4.87 -26.73 -0.13 -2.01 16 5 C 0.12 1.87 5.56 -4.05 -0.02 1.85 16 6 N -0.72 -9.27 5.55 -61.41 -0.34 -9.61 16 7 C 0.56 8.50 5.96 -12.55 -0.07 8.43 16 8 O -0.51 -10.32 17.11 5.26 0.09 -10.23 16 9 C -0.19 -2.44 5.65 -104.76 -0.59 -3.03 16 10 C 0.15 1.91 7.29 -38.98 -0.28 1.63 16 11 F -0.12 -1.81 16.83 2.25 0.04 -1.78 16 12 C -0.17 -1.59 10.00 -39.55 -0.40 -1.99 16 13 C -0.06 -0.47 10.02 -39.56 -0.40 -0.87 16 14 C -0.13 -1.34 8.68 -39.43 -0.34 -1.68 16 15 C 0.22 2.50 6.31 -83.49 -0.53 1.97 16 16 N -0.68 -6.42 5.02 -14.05 -0.07 -6.49 16 17 C 0.71 7.04 8.68 -86.92 -0.75 6.28 16 18 N -0.86 -4.84 8.88 27.63 0.25 -4.59 16 19 O -0.57 -7.55 14.58 5.29 0.08 -7.48 16 20 N -0.72 -17.42 4.57 -53.42 -0.24 -17.66 16 21 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 25 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.79 7.75 -51.92 -0.40 1.39 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.40 3.89 8.46 -40.82 -0.35 3.54 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.15 1.54 6.18 -52.48 -0.32 1.22 16 40 H 0.41 3.11 8.19 -40.82 -0.33 2.78 16 41 H 0.40 1.29 8.85 -40.82 -0.36 0.93 16 42 H 0.42 1.81 8.93 -40.82 -0.36 1.45 16 43 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -36.70 382.66 -8.14 -44.84 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.80 Total: 13.14 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -3.61 Total: 4.07 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: 0.31 Total: -65.87 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.70 -8.14 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492089746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.123 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds