Wall clock time and date at job start Tue Mar 31 2020 20:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47277 * 239.99810 * 2 1 3 5 5 C 1.52997 * 109.47346 * 174.99772 * 4 2 1 6 6 N 1.46493 * 109.47488 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00592 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99572 * 359.97438 * 7 6 5 9 9 C 1.47350 * 120.00446 * 179.72493 * 7 6 5 10 10 C 1.39953 * 120.22484 * 270.27354 * 9 7 6 11 11 F 1.35099 * 120.07032 * 0.02562 * 10 9 7 12 12 C 1.38134 * 119.85203 * 179.97438 * 10 9 7 13 13 C 1.38430 * 120.30320 * 0.02562 * 12 10 9 14 14 C 1.38093 * 120.45121 * 359.97438 * 13 12 10 15 15 C 1.38779 * 120.14367 * 359.76532 * 14 13 12 16 16 N 1.39286 * 120.15680 * 180.25978 * 15 14 13 17 17 C 1.34776 * 119.99744 * 325.24014 * 16 15 14 18 18 N 1.34771 * 120.00203 * 184.51825 * 17 16 15 19 19 O 1.21582 * 120.00004 * 4.51329 * 17 16 15 20 20 N 1.46507 * 109.47024 * 119.99894 * 2 1 3 21 21 C 1.36931 * 120.00070 * 274.99840 * 20 2 1 22 22 H 1.08007 * 119.99943 * 0.02562 * 21 20 2 23 23 C 1.38811 * 119.99992 * 180.02562 * 21 20 2 24 24 N 1.31614 * 120.00189 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99660 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46982 * 90.00299 * 25 23 21 27 27 H 1.48499 * 109.46859 * 209.99596 * 25 23 21 28 28 H 1.48500 * 109.47564 * 330.00273 * 25 23 21 29 29 H 1.09001 * 109.47287 * 60.00450 * 1 2 3 30 30 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47270 * 299.99663 * 1 2 3 32 32 H 1.08997 * 109.46742 * 54.99987 * 4 2 1 33 33 H 1.08997 * 109.47158 * 294.99913 * 4 2 1 34 34 H 1.09011 * 109.46689 * 59.99982 * 5 4 2 35 35 H 1.09003 * 109.47354 * 300.00541 * 5 4 2 36 36 H 0.97000 * 120.00022 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.84701 * 179.97438 * 12 10 9 38 38 H 1.08002 * 119.77752 * 180.02562 * 13 12 10 39 39 H 1.08006 * 119.92983 * 179.97438 * 14 13 12 40 40 H 0.97000 * 120.00180 * 145.24317 * 16 15 14 41 41 H 0.97007 * 119.99387 * 359.97438 * 18 17 16 42 42 H 0.96994 * 120.00599 * 180.02562 * 18 17 16 43 43 H 0.96992 * 119.99845 * 95.00285 * 20 2 1 44 44 H 0.97001 * 120.00105 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0533 -1.3044 -2.5095 7 6 5.3742 -1.3407 -2.7746 8 8 6.1606 -0.7993 -2.0214 9 6 5.8659 -2.0411 -3.9742 10 6 6.1956 -3.3998 -3.9111 11 9 6.0634 -4.0752 -2.7486 12 6 6.6554 -4.0489 -5.0405 13 6 6.7921 -3.3614 -6.2342 14 6 6.4705 -2.0207 -6.3106 15 6 6.0017 -1.3515 -5.1888 16 7 5.6721 -0.0004 -5.2668 17 6 6.3797 0.8206 -6.0679 18 7 6.1205 2.1432 -6.0751 19 8 7.2518 0.3682 -6.7840 20 7 2.0183 -0.6906 1.1962 21 6 2.1491 -0.0075 2.3758 22 1 1.8919 1.0404 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.9262 -1.9385 3.4497 25 14 2.7900 0.2701 5.1183 26 1 1.5224 0.1778 5.8863 27 1 3.8950 -0.3225 5.9139 28 1 3.0939 1.6956 4.8340 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7715 -1.2055 34 1 3.9995 -1.0728 -0.4259 35 1 3.8532 0.4370 -1.3573 36 1 3.4260 -1.7360 -3.1104 37 1 6.9101 -5.0972 -4.9917 38 1 7.1520 -3.8774 -7.1121 39 1 6.5808 -1.4924 -7.2462 40 1 4.9334 0.3496 -4.7446 41 1 5.4244 2.5040 -5.5039 42 1 6.6294 2.7340 -6.6519 43 1 2.2490 -1.6317 1.1527 44 1 3.2496 -2.3958 4.2418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492089746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:47 Heat of formation + Delta-G solvation = -104.944557 kcal Electronic energy + Delta-G solvation = -29038.396445 eV Core-core repulsion = 24711.194279 eV Total energy + Delta-G solvation = -4327.202166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.10534 -42.04130 -40.76778 -39.25652 -38.12602 -35.98842 -35.90320 -34.72494 -34.17358 -32.38492 -30.92688 -30.45821 -29.48082 -26.00963 -25.34054 -24.56249 -23.66495 -22.17798 -22.01701 -21.25350 -19.80871 -19.49709 -19.29914 -18.75974 -17.82388 -17.51889 -17.37236 -16.88688 -16.63358 -16.40385 -16.28008 -16.10538 -16.09754 -15.55363 -15.48749 -15.35566 -14.99130 -14.56986 -14.22983 -14.10472 -13.64892 -13.54424 -13.25502 -13.18703 -12.90357 -12.82304 -12.63781 -12.31286 -12.24827 -12.14156 -11.73701 -11.65057 -11.60085 -11.41041 -11.15637 -10.93279 -10.80888 -10.25951 -9.99304 -9.35806 -8.97763 -7.92515 -5.19340 -0.19648 0.03723 1.24945 1.45455 1.47216 1.51397 1.55015 1.89052 1.99676 2.47742 2.56961 3.09003 3.34560 3.42000 3.49275 3.83864 3.90235 3.92038 3.98311 4.19821 4.23389 4.26322 4.36403 4.66325 4.71678 4.76208 4.87829 4.92091 5.01586 5.03077 5.09438 5.18945 5.21928 5.30720 5.32623 5.40974 5.54520 5.60298 5.63115 5.78411 5.87678 6.30405 6.33761 6.69723 7.00996 7.36260 7.37233 8.15142 8.35012 9.31129 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002713 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.583500 B =10317.274187 C =11124.851386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.047 0.953 4 C -0.116 4.116 5 C 0.130 3.870 6 N -0.699 5.699 7 C 0.560 3.440 8 O -0.572 6.572 9 C -0.207 4.207 10 C 0.127 3.873 11 F -0.145 7.145 12 C -0.160 4.160 13 C -0.040 4.040 14 C -0.137 4.137 15 C 0.220 3.780 16 N -0.677 5.677 17 C 0.706 3.294 18 N -0.837 5.837 19 O -0.609 6.609 20 N -0.737 5.737 21 C -0.231 4.231 22 H 0.076 0.924 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.966 3.034 26 H -0.287 1.287 27 H -0.301 1.301 28 H -0.269 1.269 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.065 0.935 36 H 0.417 0.583 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.155 0.845 40 H 0.418 0.582 41 H 0.415 0.585 42 H 0.429 0.571 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 2.189 -28.369 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.154 4.154 5 C 0.007 3.993 6 N -0.350 5.350 7 C 0.345 3.655 8 O -0.451 6.451 9 C -0.214 4.214 10 C 0.106 3.894 11 F -0.123 7.123 12 C -0.180 4.180 13 C -0.058 4.058 14 C -0.157 4.157 15 C 0.123 3.877 16 N -0.325 5.325 17 C 0.404 3.596 18 N -0.406 5.406 19 O -0.488 6.488 20 N -0.378 5.378 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.795 3.205 26 H -0.214 1.214 27 H -0.228 1.228 28 H -0.194 1.194 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.186 0.814 38 H 0.198 0.802 39 H 0.173 0.827 40 H 0.255 0.745 41 H 0.246 0.754 42 H 0.263 0.737 43 H 0.202 0.798 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.599 2.345 -28.200 28.416 hybrid contribution -0.427 0.232 2.101 2.156 sum 2.172 2.577 -26.099 26.316 Atomic orbital electron populations 1.22267 0.97139 1.00954 1.00976 1.20473 0.93124 0.95318 0.85480 0.93488 1.21937 0.92113 1.02089 0.99287 1.21242 0.95594 0.96518 0.85967 1.45976 1.06505 1.55725 1.26803 1.18286 0.82919 0.79477 0.84802 1.90848 1.56754 1.47175 1.50301 1.19543 1.13856 0.94643 0.93385 1.17727 1.00624 0.88211 0.82790 1.91538 1.93504 1.79694 1.47611 1.21409 1.02905 1.02807 0.90851 1.21464 0.93680 0.92683 0.97978 1.21519 1.01169 0.95024 0.97996 1.17110 0.96913 0.82813 0.90905 1.42327 1.35910 1.06459 1.47830 1.16016 0.80874 0.82670 0.80009 1.42785 1.43490 1.05025 1.49301 1.90949 1.36076 1.76075 1.45707 1.42694 1.78380 1.10249 1.06438 1.19603 1.34181 0.94129 0.88403 0.90607 1.25498 1.03411 0.96849 1.01401 1.69811 1.52983 1.10282 1.29158 0.85244 0.76747 0.78139 0.80322 1.21381 1.22834 1.19435 0.90306 0.93891 0.94909 0.86921 0.91377 0.94823 0.91687 0.74581 0.81354 0.80221 0.82737 0.74452 0.75360 0.73671 0.79790 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.49 71.98 0.68 -4.08 16 2 C 0.16 5.80 2.89 44.99 0.13 5.93 16 3 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 4 C -0.12 -3.06 4.87 30.59 0.15 -2.91 16 5 C 0.13 4.09 5.56 86.38 0.48 4.57 16 6 N -0.70 -17.82 5.55 -466.45 -2.59 -20.41 16 7 C 0.56 17.51 5.96 86.64 0.52 18.03 16 8 O -0.57 -24.12 17.11 -4.08 -0.07 -24.19 16 9 C -0.21 -5.30 5.65 -19.95 -0.11 -5.42 16 10 C 0.13 3.12 7.29 22.66 0.17 3.28 16 11 F -0.14 -4.38 16.83 44.97 0.76 -3.63 16 12 C -0.16 -2.62 10.00 22.29 0.22 -2.40 16 13 C -0.04 -0.52 10.02 22.28 0.22 -0.30 16 14 C -0.14 -2.44 8.68 22.36 0.19 -2.24 16 15 C 0.22 4.69 6.31 38.60 0.24 4.93 16 16 N -0.68 -12.07 5.02 -316.63 -1.59 -13.66 16 17 C 0.71 13.12 8.68 179.06 1.55 14.68 16 18 N -0.84 -8.06 8.88 -184.76 -1.64 -9.70 16 19 O -0.61 -15.46 14.58 -3.97 -0.06 -15.52 16 20 N -0.74 -36.01 4.57 -322.93 -1.48 -37.49 16 21 C -0.23 -12.75 9.93 84.03 0.83 -11.92 16 22 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 24 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 25 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 28 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.44 7.75 -2.38 -0.02 1.42 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.42 7.51 8.46 -92.71 -0.78 6.72 16 37 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.16 2.81 6.18 -2.91 -0.02 2.79 16 40 H 0.42 5.82 8.19 -92.71 -0.76 5.06 16 41 H 0.42 1.82 8.85 -92.70 -0.82 1.00 16 42 H 0.43 2.97 8.93 -92.71 -0.83 2.14 16 43 H 0.37 19.85 7.80 -92.71 -0.72 19.13 16 44 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -84.60 382.66 -1.41 -86.02 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -2.81 Total: 32.01 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.75 Total: 17.96 kcal Atomic # 7 Polarization: -134.97 SS G_CDS: -7.01 Total: -141.99 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.13 Total: -39.71 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.76 Total: -3.63 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -84.60 -1.41 -86.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492089746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.928 kcal (2) G-P(sol) polarization free energy of solvation -84.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds