Wall clock time and date at job start Tue Mar 31 2020 20:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 5 5 C 1.46897 * 111.00133 * 275.00091 * 4 2 1 6 6 C 1.50705 * 109.47250 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99690 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99724 * 179.97438 * 6 5 4 9 9 C 1.37099 * 119.99768 * 179.97438 * 8 6 5 10 10 H 1.08008 * 120.00079 * 0.02562 * 9 8 6 11 11 C 1.38949 * 120.00393 * 179.97438 * 9 8 6 12 12 N 1.31415 * 119.99836 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00366 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47179 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47294 * 120.00271 * 13 11 9 16 16 H 1.48505 * 109.47178 * 240.00327 * 13 11 9 17 17 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 18 18 H 1.09007 * 109.46669 * 175.00116 * 17 2 1 19 19 C 1.53002 * 109.47645 * 294.99642 * 17 2 1 20 20 N 1.46497 * 109.47333 * 55.00472 * 17 2 1 21 21 C 1.34773 * 120.00304 * 154.99921 * 20 17 2 22 22 O 1.21513 * 120.00296 * 359.97438 * 21 20 17 23 23 C 1.48161 * 119.99875 * 179.97438 * 21 20 17 24 24 C 1.39900 * 120.90444 * 179.97438 * 23 21 20 25 25 C 1.38044 * 119.06456 * 180.02562 * 24 23 21 26 26 N 1.31883 * 120.93722 * 359.97438 * 25 24 23 27 27 C 1.31959 * 122.00885 * 0.02562 * 26 25 24 28 28 F 1.35104 * 119.58717 * 179.97438 * 27 26 25 29 29 C 1.38523 * 120.83075 * 359.71816 * 27 26 25 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.00901 * 110.99931 * 151.04418 * 4 2 1 34 34 H 1.09003 * 109.46826 * 299.99875 * 5 4 2 35 35 H 1.08993 * 109.47326 * 59.99934 * 5 4 2 36 36 H 0.96996 * 120.00663 * 359.97438 * 8 6 5 37 37 H 0.97000 * 120.00384 * 179.97438 * 12 11 9 38 38 H 1.08998 * 109.47381 * 179.97438 * 19 17 2 39 39 H 1.08993 * 109.47092 * 300.00720 * 19 17 2 40 40 H 1.09006 * 109.46455 * 60.00000 * 19 17 2 41 41 H 0.97000 * 119.99812 * 334.99091 * 20 17 2 42 42 H 1.07996 * 120.46917 * 359.97438 * 24 23 21 43 43 H 1.08004 * 119.53133 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.51698 * 180.28802 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5886 -0.5216 3.5557 7 8 2.8689 -1.6985 3.4699 8 7 2.7297 0.1208 4.7321 9 6 3.1896 -0.5563 5.8319 10 1 3.4392 -1.6044 5.7556 11 6 3.3356 0.1059 7.0447 12 7 3.0324 1.3813 7.1376 13 14 3.9629 -0.8164 8.5430 14 1 4.2313 -2.2305 8.1773 15 1 5.2170 -0.1835 9.0247 16 1 2.9395 -0.7683 9.6181 17 6 2.0399 -0.7213 -1.2493 18 1 3.1263 -0.6444 -1.2952 19 6 1.6352 -2.1955 -1.1880 20 7 1.4559 -0.1037 -2.4424 21 6 2.0912 -0.1938 -3.6275 22 8 3.1487 -0.7870 -3.7065 23 6 1.5001 0.4304 -4.8343 24 6 2.1435 0.3489 -6.0738 25 6 1.5590 0.9448 -7.1733 26 7 0.4102 1.5839 -7.0675 27 6 -0.2306 1.6850 -5.9184 28 9 -1.4045 2.3517 -5.8657 29 6 0.2825 1.1118 -4.7664 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9174 -1.1205 1.0287 34 1 2.7589 1.0461 2.1182 35 1 1.0872 0.6162 2.5525 36 1 2.5059 1.0620 4.8007 37 1 3.1339 1.8436 7.9842 38 1 1.9981 -2.7093 -2.0782 39 1 2.0698 -2.6550 -0.3003 40 1 0.5489 -2.2724 -1.1420 41 1 0.6118 0.3701 -2.3794 42 1 3.0847 -0.1722 -6.1691 43 1 2.0494 0.8868 -8.1338 44 1 -0.2485 1.1938 -3.8296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505569537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:04 Heat of formation + Delta-G solvation = -70.172220 kcal Electronic energy + Delta-G solvation = -28056.380325 eV Core-core repulsion = 23730.686001 eV Total energy + Delta-G solvation = -4325.694324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.55428 -41.17307 -39.79200 -38.50358 -37.43025 -34.73775 -33.92325 -33.47346 -31.61784 -31.29460 -30.81766 -29.25584 -26.65196 -25.83734 -24.67197 -24.22202 -23.36634 -21.34371 -20.05121 -19.42875 -19.03024 -17.98288 -17.86369 -17.17672 -16.66410 -16.53101 -16.38973 -15.90932 -15.67272 -15.30391 -15.23286 -14.91705 -14.48778 -14.34678 -14.00702 -13.93875 -13.77603 -13.65462 -13.25746 -12.90640 -12.81433 -12.62069 -12.30719 -12.13545 -11.88419 -11.66276 -11.49528 -11.16896 -11.02017 -10.82570 -10.78565 -10.67219 -10.36324 -10.25992 -10.24140 -9.69178 -9.54921 -9.50678 -8.52051 -8.18455 -7.99449 -6.44695 -3.85556 -0.03758 0.24438 2.29670 2.49748 2.90349 3.08755 3.14456 3.25374 3.32573 3.72305 3.86844 4.00025 4.03796 4.20256 4.22411 4.28093 4.46160 4.71633 4.75971 4.86861 5.02970 5.07487 5.11250 5.21845 5.29170 5.32962 5.45481 5.48141 5.59584 5.70372 5.81614 5.85666 5.87023 5.89938 6.02671 6.20455 6.23109 6.33553 6.92937 6.96027 7.10360 7.51986 7.52870 7.65417 8.03292 8.57657 9.14992 9.50894 10.01893 10.73044 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.001771 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.880664 B =15806.725710 C =16310.884540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.049 0.951 4 N -0.656 5.656 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.141 3.859 18 H 0.091 0.909 19 C -0.158 4.158 20 N -0.712 5.712 21 C 0.558 3.442 22 O -0.519 6.519 23 C -0.056 4.056 24 C -0.127 4.127 25 C 0.137 3.863 26 N -0.500 5.500 27 C 0.308 3.692 28 F -0.107 7.107 29 C -0.166 4.166 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.400 0.600 42 H 0.159 0.841 43 H 0.178 0.822 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 2.809 -25.949 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 H 0.067 0.933 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.036 3.964 18 H 0.109 0.891 19 C -0.216 4.216 20 N -0.365 5.365 21 C 0.343 3.657 22 O -0.395 6.395 23 C -0.067 4.067 24 C -0.148 4.148 25 C -0.019 4.019 26 N -0.215 5.215 27 C 0.155 3.845 28 F -0.086 7.086 29 C -0.188 4.188 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.173 0.827 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.238 0.762 42 H 0.177 0.823 43 H 0.195 0.805 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.276 1.858 -26.391 27.190 hybrid contribution 0.490 0.943 1.415 1.769 sum -5.786 2.802 -24.976 25.790 Atomic orbital electron populations 1.21902 0.94408 1.03066 1.00951 1.21728 0.96604 0.95984 0.89209 0.93317 1.60192 1.35006 1.31680 1.02081 1.21742 1.01394 0.93873 0.91217 1.19761 0.85041 0.88202 0.84406 1.90529 1.55311 1.16087 1.84709 1.41865 1.57710 1.12424 1.07998 1.19759 1.39840 0.96468 0.86775 0.87823 1.25272 0.97651 0.95788 0.99284 1.69619 1.48692 1.08859 1.27125 0.85795 0.78227 0.79636 0.80657 1.19193 1.20772 1.20732 1.21196 0.98869 0.93641 0.82649 0.89079 1.22139 1.02268 0.94243 1.02999 1.46100 1.25847 1.56476 1.08112 1.18005 0.84598 0.80231 0.82848 1.90827 1.21631 1.41864 1.85165 1.20324 0.94052 0.97121 0.95188 1.22416 1.01847 0.99027 0.91480 1.22634 0.88925 0.90988 0.99381 1.66920 1.10127 1.17845 1.26638 1.17968 0.83611 0.92993 0.89924 1.91672 1.42946 1.77519 1.96480 1.22016 0.97092 1.00120 0.99524 0.91783 0.93457 0.90988 0.82748 0.93767 0.89486 0.77478 0.91908 0.92716 0.89644 0.91990 0.76235 0.82292 0.80549 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.93 37.16 0.33 -1.00 16 2 C 0.08 0.80 2.66 -67.71 -0.18 0.62 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 N -0.66 -9.51 5.14 -107.99 -0.55 -10.06 16 5 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 6 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 7 O -0.58 -15.37 15.78 5.55 0.09 -15.28 16 8 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 9 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 13 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.14 1.42 2.30 -67.93 -0.16 1.26 16 18 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 19 C -0.16 -1.69 9.02 37.16 0.34 -1.35 16 20 N -0.71 -5.79 4.95 -54.65 -0.27 -6.06 16 21 C 0.56 5.33 7.76 -12.19 -0.09 5.24 16 22 O -0.52 -6.72 16.11 5.35 0.09 -6.63 16 23 C -0.06 -0.42 5.91 -104.66 -0.62 -1.04 16 24 C -0.13 -0.82 9.68 -39.03 -0.38 -1.19 16 25 C 0.14 0.80 11.17 -17.60 -0.20 0.60 16 26 N -0.50 -4.19 10.35 -13.64 -0.14 -4.33 16 27 C 0.31 2.48 8.41 -17.39 -0.15 2.34 16 28 F -0.11 -0.92 17.29 2.25 0.04 -0.88 16 29 C -0.17 -1.07 9.59 -38.93 -0.37 -1.44 16 30 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 31 H 0.05 0.29 6.29 -51.93 -0.33 -0.03 16 32 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 33 H 0.35 5.40 7.61 -39.29 -0.30 5.10 16 34 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 35 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 36 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.04 7.17 -51.93 -0.37 0.67 16 40 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 41 H 0.40 2.31 4.72 -40.82 -0.19 2.12 16 42 H 0.16 0.89 7.74 -52.49 -0.41 0.48 16 43 H 0.18 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.15 0.60 6.53 -52.49 -0.34 0.25 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -33.34 374.28 -6.59 -39.94 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.29 Total: 12.49 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.83 Total: 6.91 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.30 Total: -58.02 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.17 Total: -21.91 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.34 -6.59 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505569537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.237 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds