Wall clock time and date at job start Tue Mar 31 2020 20:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 5 5 C 1.34773 * 119.99969 * 274.72265 * 4 2 1 6 6 O 1.21514 * 120.00185 * 0.02562 * 5 4 2 7 7 C 1.48156 * 119.99876 * 179.97438 * 5 4 2 8 8 C 1.39894 * 120.90851 * 180.02562 * 7 5 4 9 9 C 1.38046 * 119.06855 * 180.02562 * 8 7 5 10 10 N 1.31884 * 120.93523 * 0.02562 * 9 8 7 11 11 C 1.31957 * 122.00742 * 359.97438 * 10 9 8 12 12 F 1.35104 * 119.58269 * 179.97438 * 11 10 9 13 13 C 1.38526 * 120.83286 * 359.72147 * 11 10 9 14 14 C 1.52993 * 109.47602 * 239.99741 * 2 1 3 15 15 H 1.09001 * 109.47077 * 300.00924 * 14 2 1 16 16 C 1.52997 * 109.47602 * 179.97438 * 14 2 1 17 17 N 1.46906 * 109.47055 * 59.99711 * 14 2 1 18 18 C 1.46892 * 111.00346 * 205.00151 * 17 14 2 19 19 C 1.50705 * 109.47438 * 180.02562 * 18 17 14 20 20 O 1.21294 * 119.99288 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00029 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99704 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99864 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99858 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99723 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99626 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47305 * 60.00073 * 26 24 22 28 28 H 1.48499 * 109.46656 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47197 * 299.99528 * 26 24 22 30 30 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 31 31 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 32 32 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 95.00317 * 4 2 1 34 34 H 1.08000 * 120.46839 * 359.97438 * 8 7 5 35 35 H 1.08007 * 119.53292 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.51570 * 180.28931 * 13 11 10 37 37 H 1.08999 * 109.46983 * 300.00259 * 16 14 2 38 38 H 1.09002 * 109.46832 * 60.00019 * 16 14 2 39 39 H 1.08998 * 109.47326 * 180.02562 * 16 14 2 40 40 H 1.00899 * 111.00026 * 328.95990 * 17 14 2 41 41 H 1.09007 * 109.47287 * 300.00562 * 18 17 14 42 42 H 1.09004 * 109.47365 * 60.00263 * 18 17 14 43 43 H 0.97001 * 120.00112 * 0.02562 * 21 19 18 44 44 H 0.97006 * 119.99365 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1522 -0.0169 2.3558 6 8 1.8676 1.1633 2.4092 7 6 2.6454 -0.7154 3.5657 8 6 2.7912 -0.0348 4.7792 9 6 3.2545 -0.7228 5.8826 10 7 3.5586 -2.0037 5.8044 11 6 3.4363 -2.6843 4.6805 12 9 3.7626 -3.9951 4.6556 13 6 2.9726 -2.0729 3.5272 14 6 2.0401 -0.7213 -1.2491 15 1 1.6766 -1.7489 -1.2492 16 6 3.5700 -0.7207 -1.2494 17 7 1.5504 -0.0288 -2.4487 18 6 1.4876 -0.9439 -3.5960 19 6 0.9828 -0.1995 -4.8053 20 8 0.7032 0.9776 -4.7196 21 7 0.8429 -0.8416 -5.9819 22 6 0.3841 -0.1643 -7.0821 23 1 0.1343 0.8837 -7.0057 24 6 0.2394 -0.8264 -8.2952 25 7 0.5428 -2.1016 -8.3879 26 14 -0.3865 0.0964 -9.7939 27 1 0.5355 1.2182 -10.1052 28 1 -0.4493 -0.8286 -10.9540 29 1 -1.7425 0.6331 -9.5142 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2489 -1.6318 1.1527 34 1 2.5456 1.0144 4.8515 35 1 3.3703 -0.2046 6.8232 36 1 2.8701 -2.6359 2.6113 37 1 3.9330 0.3071 -1.2497 38 1 3.9337 -1.2342 -0.3594 39 1 3.9334 -1.2341 -2.1396 40 1 0.6527 0.3992 -2.2780 41 1 2.4831 -1.3377 -3.8016 42 1 0.8112 -1.7675 -3.3674 43 1 1.0668 -1.7829 -6.0504 44 1 0.4414 -2.5639 -9.2347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505569540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:10 Heat of formation + Delta-G solvation = -71.716540 kcal Electronic energy + Delta-G solvation = -28050.970376 eV Core-core repulsion = 23725.209085 eV Total energy + Delta-G solvation = -4325.761291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.55498 -41.16837 -39.77777 -38.50363 -37.36947 -34.74501 -33.92180 -33.47269 -31.59586 -31.28784 -30.66708 -29.94251 -26.51474 -25.71282 -24.41067 -24.21235 -23.18042 -21.19679 -20.73999 -19.39666 -18.97628 -18.01385 -17.86992 -17.16245 -16.66899 -16.58976 -16.48021 -15.98615 -15.48784 -15.40481 -15.13784 -14.67097 -14.49624 -14.10805 -14.02776 -13.93904 -13.84223 -13.63601 -13.54981 -13.08438 -12.81070 -12.54583 -12.46049 -12.00100 -11.78884 -11.67534 -11.51159 -11.42064 -11.05241 -10.80791 -10.74419 -10.67176 -10.46184 -10.25855 -10.23295 -9.69203 -9.53415 -9.52494 -8.50972 -8.17160 -7.99355 -6.44459 -3.85367 -0.03773 0.24420 2.29610 2.47942 2.90322 3.08729 3.18409 3.24364 3.28770 3.72047 3.86842 3.99766 4.04963 4.20220 4.22336 4.27619 4.46928 4.71913 4.73706 4.86779 5.00005 5.07673 5.10755 5.21644 5.25615 5.32102 5.36485 5.51620 5.58197 5.70328 5.74800 5.84859 5.87301 5.90709 6.02401 6.05608 6.18086 6.27863 6.92996 6.96244 7.11231 7.52563 7.55376 7.65165 8.03012 8.57910 9.14912 9.50803 10.02072 10.73093 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.001775 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.313528 B =15769.531666 C =16431.700944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 H 0.104 0.896 4 N -0.710 5.710 5 C 0.560 3.440 6 O -0.517 6.517 7 C -0.056 4.056 8 C -0.127 4.127 9 C 0.137 3.863 10 N -0.500 5.500 11 C 0.308 3.692 12 F -0.107 7.107 13 C -0.165 4.165 14 C 0.077 3.923 15 H 0.048 0.952 16 C -0.141 4.141 17 N -0.660 5.660 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.153 0.847 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.352 0.648 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -3.609 26.132 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.036 3.964 3 H 0.122 0.878 4 N -0.362 5.362 5 C 0.345 3.655 6 O -0.393 6.393 7 C -0.067 4.067 8 C -0.148 4.148 9 C -0.019 4.019 10 N -0.215 5.215 11 C 0.155 3.845 12 F -0.086 7.086 13 C -0.187 4.187 14 C -0.034 4.034 15 H 0.066 0.934 16 C -0.199 4.199 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.235 0.765 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.175 0.825 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.718 -2.319 26.553 27.261 hybrid contribution -0.997 -1.273 -1.409 2.144 sum 4.721 -3.592 25.145 25.835 Atomic orbital electron populations 1.22269 0.94786 1.02453 1.03454 1.21191 0.94215 0.98375 0.82639 0.87780 1.45922 1.66638 1.14034 1.09615 1.17970 0.78295 0.86544 0.82723 1.90833 1.49122 1.14860 1.84474 1.20317 0.98217 0.92891 0.95242 1.22416 0.97851 1.02869 0.91634 1.22634 0.92711 0.87523 0.99073 1.66919 1.17010 1.10424 1.27191 1.17973 0.96391 0.80040 0.90119 1.91672 1.89734 1.30669 1.96560 1.22019 1.02053 0.95234 0.99423 1.21745 0.96614 0.95894 0.89132 0.93441 1.21823 0.94061 1.02935 1.01078 1.60175 1.35403 1.31847 1.02171 1.21729 1.01402 0.93818 0.91177 1.19770 0.85091 0.88215 0.84430 1.90532 1.55328 1.16074 1.84737 1.41851 1.57712 1.12414 1.07930 1.19661 1.40102 0.96438 0.86785 0.87935 1.25268 0.97608 0.95788 0.99256 1.69606 1.48539 1.08841 1.27302 0.85909 0.79428 0.78846 0.79989 1.19862 1.20975 1.19906 0.91552 0.90454 0.92327 0.76468 0.82288 0.80561 0.82985 0.91588 0.93052 0.92083 0.82523 0.89490 0.93779 0.77467 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.25 37.16 0.34 -1.37 16 2 C 0.14 1.41 2.30 -67.93 -0.16 1.25 16 3 H 0.10 1.28 7.57 -51.93 -0.39 0.89 16 4 N -0.71 -5.56 4.34 -54.65 -0.24 -5.80 16 5 C 0.56 5.20 7.77 -12.19 -0.09 5.11 16 6 O -0.52 -6.61 16.10 5.35 0.09 -6.53 16 7 C -0.06 -0.41 5.91 -104.66 -0.62 -1.02 16 8 C -0.13 -0.80 9.68 -39.03 -0.38 -1.18 16 9 C 0.14 0.79 11.17 -17.60 -0.20 0.59 16 10 N -0.50 -4.16 10.35 -13.64 -0.14 -4.30 16 11 C 0.31 2.45 8.41 -17.39 -0.15 2.30 16 12 F -0.11 -0.92 17.29 2.25 0.04 -0.88 16 13 C -0.17 -1.03 9.59 -38.93 -0.37 -1.40 16 14 C 0.08 0.83 2.28 -67.71 -0.15 0.67 16 15 H 0.05 0.45 7.80 -51.93 -0.40 0.05 16 16 C -0.14 -1.44 9.26 37.16 0.34 -1.10 16 17 N -0.66 -9.88 5.93 -107.99 -0.64 -10.52 16 18 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 19 C 0.44 10.10 7.82 -10.98 -0.09 10.02 16 20 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 21 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 26 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.85 6.21 -51.93 -0.32 0.52 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 2.10 6.53 -40.82 -0.27 1.84 16 34 H 0.16 0.87 7.74 -52.49 -0.41 0.46 16 35 H 0.18 0.42 8.06 -52.48 -0.42 0.00 16 36 H 0.15 0.56 6.53 -52.49 -0.34 0.21 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16 39 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 40 H 0.35 5.46 5.87 -39.29 -0.23 5.23 16 41 H 0.09 1.34 7.43 -51.92 -0.39 0.95 16 42 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -33.62 378.05 -6.72 -40.34 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.47 Total: 12.31 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -1.79 Total: 6.77 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.35 Total: -58.11 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.62 -6.72 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505569540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.379 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds