Wall clock time and date at job start Tue Mar 31 2020 20:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 5 5 C 1.34773 * 119.99969 * 274.72265 * 4 2 1 6 6 O 1.21514 * 120.00185 * 0.02562 * 5 4 2 7 7 C 1.48156 * 119.99876 * 179.97438 * 5 4 2 8 8 C 1.39894 * 120.90851 * 180.02562 * 7 5 4 9 9 C 1.38046 * 119.06855 * 180.02562 * 8 7 5 10 10 N 1.31884 * 120.93523 * 0.02562 * 9 8 7 11 11 C 1.31957 * 122.00742 * 359.97438 * 10 9 8 12 12 F 1.35104 * 119.58269 * 179.97438 * 11 10 9 13 13 C 1.38526 * 120.83286 * 359.72147 * 11 10 9 14 14 C 1.52993 * 109.47602 * 239.99741 * 2 1 3 15 15 H 1.09001 * 109.47077 * 300.00924 * 14 2 1 16 16 C 1.52997 * 109.47602 * 179.97438 * 14 2 1 17 17 N 1.46906 * 109.47055 * 59.99711 * 14 2 1 18 18 C 1.46892 * 111.00346 * 205.00151 * 17 14 2 19 19 C 1.50705 * 109.47438 * 180.02562 * 18 17 14 20 20 O 1.21294 * 119.99288 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00029 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99704 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99864 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99858 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99723 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99626 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47305 * 60.00073 * 26 24 22 28 28 H 1.48499 * 109.46656 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47197 * 299.99528 * 26 24 22 30 30 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 31 31 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 32 32 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 95.00317 * 4 2 1 34 34 H 1.08000 * 120.46839 * 359.97438 * 8 7 5 35 35 H 1.08007 * 119.53292 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.51570 * 180.28931 * 13 11 10 37 37 H 1.08999 * 109.46983 * 300.00259 * 16 14 2 38 38 H 1.09002 * 109.46832 * 60.00019 * 16 14 2 39 39 H 1.08998 * 109.47326 * 180.02562 * 16 14 2 40 40 H 1.00899 * 111.00026 * 328.95990 * 17 14 2 41 41 H 1.09007 * 109.47287 * 300.00562 * 18 17 14 42 42 H 1.09004 * 109.47365 * 60.00263 * 18 17 14 43 43 H 0.97001 * 120.00112 * 0.02562 * 21 19 18 44 44 H 0.97006 * 119.99365 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1522 -0.0169 2.3558 6 8 1.8676 1.1633 2.4092 7 6 2.6454 -0.7154 3.5657 8 6 2.7912 -0.0348 4.7792 9 6 3.2545 -0.7228 5.8826 10 7 3.5586 -2.0037 5.8044 11 6 3.4363 -2.6843 4.6805 12 9 3.7626 -3.9951 4.6556 13 6 2.9726 -2.0729 3.5272 14 6 2.0401 -0.7213 -1.2491 15 1 1.6766 -1.7489 -1.2492 16 6 3.5700 -0.7207 -1.2494 17 7 1.5504 -0.0288 -2.4487 18 6 1.4876 -0.9439 -3.5960 19 6 0.9828 -0.1995 -4.8053 20 8 0.7032 0.9776 -4.7196 21 7 0.8429 -0.8416 -5.9819 22 6 0.3841 -0.1643 -7.0821 23 1 0.1343 0.8837 -7.0057 24 6 0.2394 -0.8264 -8.2952 25 7 0.5428 -2.1016 -8.3879 26 14 -0.3865 0.0964 -9.7939 27 1 0.5355 1.2182 -10.1052 28 1 -0.4493 -0.8286 -10.9540 29 1 -1.7425 0.6331 -9.5142 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2489 -1.6318 1.1527 34 1 2.5456 1.0144 4.8515 35 1 3.3703 -0.2046 6.8232 36 1 2.8701 -2.6359 2.6113 37 1 3.9330 0.3071 -1.2497 38 1 3.9337 -1.2342 -0.3594 39 1 3.9334 -1.2341 -2.1396 40 1 0.6527 0.3992 -2.2780 41 1 2.4831 -1.3377 -3.8016 42 1 0.8112 -1.7675 -3.3674 43 1 1.0668 -1.7829 -6.0504 44 1 0.4414 -2.5639 -9.2347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505569540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:09 Heat of formation + Delta-G solvation = -97.709433 kcal Electronic energy + Delta-G solvation = -28052.097513 eV Core-core repulsion = 23725.209085 eV Total energy + Delta-G solvation = -4326.888428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.13283 -41.79933 -40.53158 -40.08310 -38.49887 -36.07144 -35.49729 -34.16245 -33.26343 -32.14678 -31.60137 -30.80410 -28.05867 -26.36872 -25.91743 -24.87378 -24.04404 -21.93934 -21.58762 -21.09941 -19.94108 -19.68733 -18.52503 -18.00153 -17.56816 -17.34276 -17.21925 -17.07260 -16.66799 -16.40937 -16.18487 -15.94756 -15.66277 -15.43637 -15.13699 -14.87684 -14.68829 -14.53056 -14.22920 -14.16803 -14.06832 -13.53686 -13.47392 -13.27310 -13.14004 -12.89700 -12.69288 -12.62324 -12.42640 -12.35361 -12.12307 -11.64388 -11.54158 -11.49562 -11.25210 -10.85036 -10.33572 -10.29792 -10.17747 -10.00903 -9.35593 -8.46198 -5.94621 -0.59002 -0.24067 1.40079 1.42302 1.52776 1.63779 1.76199 2.06324 2.29857 2.39800 2.54214 2.93436 3.21223 3.21793 3.48936 3.50724 3.63252 3.72050 3.73779 3.93000 4.15048 4.26919 4.31145 4.38845 4.42845 4.46755 4.55367 4.60518 4.65312 4.70347 4.83164 4.85476 4.94614 4.99613 5.19333 5.26547 5.39293 5.40140 5.41833 5.89558 6.10254 6.30855 6.38534 6.45674 6.60922 6.97637 7.13390 7.57233 8.12764 8.70765 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027873 B = 0.001775 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.313528 B =15769.531666 C =16431.700944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.078 0.922 4 N -0.696 5.696 5 C 0.562 3.438 6 O -0.558 6.558 7 C -0.066 4.066 8 C -0.124 4.124 9 C 0.142 3.858 10 N -0.523 5.523 11 C 0.290 3.710 12 F -0.115 7.115 13 C -0.151 4.151 14 C 0.082 3.918 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.679 5.679 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.416 0.584 34 H 0.166 0.834 35 H 0.209 0.791 36 H 0.179 0.821 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.347 0.653 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 -5.045 26.921 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.096 0.904 4 N -0.349 5.349 5 C 0.349 3.651 6 O -0.436 6.436 7 C -0.077 4.077 8 C -0.145 4.145 9 C -0.014 4.014 10 N -0.239 5.239 11 C 0.137 3.863 12 F -0.094 7.094 13 C -0.172 4.172 14 C -0.028 4.028 15 H 0.092 0.908 16 C -0.198 4.198 17 N -0.315 5.315 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.183 0.817 35 H 0.225 0.775 36 H 0.196 0.804 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.056 -3.822 27.354 28.276 hybrid contribution -1.073 -0.789 -1.557 2.049 sum 4.983 -4.611 25.797 26.675 Atomic orbital electron populations 1.22212 0.94673 1.03205 1.02436 1.20908 0.94186 0.97253 0.83257 0.90407 1.45719 1.65943 1.14643 1.08557 1.18216 0.77504 0.86066 0.83329 1.90821 1.51008 1.16673 1.85108 1.20183 0.99390 0.93389 0.94708 1.22601 0.97116 1.03239 0.91541 1.23116 0.91531 0.86715 1.00069 1.66937 1.17631 1.11502 1.27802 1.18155 0.97436 0.79955 0.90715 1.91649 1.89952 1.31204 1.96627 1.22128 1.00574 0.94669 0.99868 1.21788 0.96850 0.96718 0.87443 0.90811 1.21833 0.93501 1.02074 1.02359 1.60157 1.35365 1.32565 1.03406 1.21581 1.02520 0.93639 0.88791 1.20918 0.83212 0.87997 0.85496 1.90502 1.56676 1.18278 1.85632 1.41915 1.58291 1.12590 1.08162 1.19621 1.42220 0.95945 0.88618 0.90395 1.26012 0.97258 0.96632 1.01311 1.69661 1.48528 1.09591 1.28180 0.85012 0.78702 0.77833 0.76936 1.19872 1.19484 1.19719 0.92324 0.91732 0.90618 0.74574 0.81680 0.77461 0.80406 0.93560 0.90193 0.92364 0.83123 0.87656 0.90980 0.76897 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.25 71.98 0.67 -2.51 16 2 C 0.15 2.81 2.30 44.99 0.10 2.91 16 3 H 0.08 1.93 7.57 -2.39 -0.02 1.92 16 4 N -0.70 -9.42 4.34 -445.12 -1.93 -11.35 16 5 C 0.56 9.74 7.77 86.88 0.67 10.41 16 6 O -0.56 -14.16 16.10 -3.76 -0.06 -14.22 16 7 C -0.07 -0.84 5.91 -19.89 -0.12 -0.96 16 8 C -0.12 -1.37 9.68 22.63 0.22 -1.15 16 9 C 0.14 1.36 11.17 84.64 0.95 2.31 16 10 N -0.52 -7.91 10.35 -197.07 -2.04 -9.95 16 11 C 0.29 4.16 8.41 84.74 0.71 4.87 16 12 F -0.12 -1.83 17.29 44.97 0.78 -1.05 16 13 C -0.15 -1.54 9.59 22.69 0.22 -1.32 16 14 C 0.08 1.58 2.28 44.91 0.10 1.68 16 15 H 0.07 1.10 7.80 -2.39 -0.02 1.08 16 16 C -0.14 -2.55 9.26 71.98 0.67 -1.88 16 17 N -0.68 -19.61 5.93 -495.58 -2.94 -22.55 16 18 C 0.07 2.11 5.96 85.56 0.51 2.62 16 19 C 0.44 20.13 7.82 87.66 0.69 20.82 16 20 O -0.62 -34.11 15.78 -3.07 -0.05 -34.15 16 21 N -0.57 -28.67 5.29 -306.97 -1.62 -30.30 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 26 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.41 6.21 -2.39 -0.01 1.39 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.42 2.94 6.53 -92.70 -0.61 2.33 16 34 H 0.17 1.61 7.74 -2.91 -0.02 1.58 16 35 H 0.21 0.47 8.06 -2.91 -0.02 0.44 16 36 H 0.18 0.70 6.53 -2.91 -0.02 0.68 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 0.98 7.45 -2.39 -0.02 0.96 16 39 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 40 H 0.35 10.68 5.87 -89.69 -0.53 10.16 16 41 H 0.11 2.98 7.43 -2.38 -0.02 2.96 16 42 H 0.07 1.90 8.06 -2.38 -0.02 1.89 16 43 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 44 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -74.61 378.05 0.33 -74.28 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.78 Total: 33.56 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.67 Total: 19.65 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -8.25 Total: -122.65 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.11 Total: -48.38 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -74.61 0.33 -74.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505569540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.430 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds