Wall clock time and date at job start Tue Mar 31 2020 20:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 C 1.50694 * 109.47381 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00497 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00594 * 180.02562 * 8 6 5 10 10 H 1.08008 * 119.99964 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00381 * 179.97438 * 9 8 6 12 12 N 1.31414 * 119.99858 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 119.99887 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47303 * 89.99882 * 13 11 9 15 15 H 1.48497 * 109.47252 * 210.00386 * 13 11 9 16 16 H 1.48506 * 109.47217 * 330.00159 * 13 11 9 17 17 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 18 18 H 1.09002 * 109.47075 * 299.99262 * 17 2 1 19 19 C 1.53006 * 109.46711 * 180.02562 * 17 2 1 20 20 N 1.46492 * 109.47204 * 59.99987 * 17 2 1 21 21 C 1.34780 * 119.99930 * 204.99895 * 20 17 2 22 22 O 1.21507 * 119.99876 * 359.97438 * 21 20 17 23 23 C 1.48159 * 120.00090 * 180.02562 * 21 20 17 24 24 C 1.39893 * 120.90714 * 179.97438 * 23 21 20 25 25 C 1.38044 * 119.06503 * 179.97438 * 24 23 21 26 26 N 1.31878 * 120.93791 * 0.02562 * 25 24 23 27 27 C 1.31962 * 122.00915 * 359.97438 * 26 25 24 28 28 F 1.35108 * 119.58606 * 179.97438 * 27 26 25 29 29 C 1.38521 * 120.82880 * 359.72259 * 27 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.00904 * 110.99838 * 151.04516 * 4 2 1 34 34 H 1.08998 * 109.47346 * 299.99916 * 5 4 2 35 35 H 1.09007 * 109.47035 * 60.00148 * 5 4 2 36 36 H 0.97005 * 119.99767 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99774 * 179.97438 * 12 11 9 38 38 H 1.08996 * 109.47165 * 59.99875 * 19 17 2 39 39 H 1.09001 * 109.46726 * 179.97438 * 19 17 2 40 40 H 1.09002 * 109.46589 * 299.99365 * 19 17 2 41 41 H 0.96998 * 120.00353 * 24.99609 * 20 17 2 42 42 H 1.07998 * 120.46568 * 0.02902 * 24 23 21 43 43 H 1.07999 * 119.53242 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.51643 * 180.28631 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5218 3.5559 7 8 2.8669 -1.6990 3.4704 8 7 2.7274 0.1201 4.7327 9 6 3.1872 -0.5570 5.8326 10 1 3.4369 -1.6050 5.7562 11 6 3.3320 0.1050 7.0456 12 7 3.7723 -0.5442 8.1000 13 14 2.9008 1.9177 7.1777 14 1 1.4714 2.0605 7.5539 15 1 3.7517 2.5547 8.2147 16 1 3.1366 2.5793 5.8692 17 6 2.0399 -0.7212 -1.2493 18 1 1.6766 -1.7489 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0306 -2.4454 21 6 1.4228 -0.7030 -3.6064 22 8 1.7122 -1.8818 -3.6611 23 6 0.9295 -0.0044 -4.8162 24 6 0.7891 -0.6836 -6.0311 25 6 0.3255 0.0045 -7.1344 26 7 0.0170 1.2842 -7.0550 27 6 0.1342 1.9635 -5.9297 28 9 -0.1954 3.2735 -5.9039 29 6 0.5859 1.3490 -4.7734 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 2.9173 -1.1205 1.0286 34 1 2.7589 1.0461 2.1182 35 1 1.0870 0.6162 2.5525 36 1 2.5034 1.0615 4.8013 37 1 3.8737 -0.0819 8.9467 38 1 3.9329 -1.2359 -0.3590 39 1 3.9332 -1.2360 -2.1388 40 1 3.9336 0.3058 -1.2488 41 1 1.3208 0.9105 -2.4018 42 1 1.0390 -1.7317 -6.1046 43 1 0.2146 -0.5124 -8.0762 44 1 0.6755 1.9086 -3.8540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505569542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:13 Heat of formation + Delta-G solvation = -64.387895 kcal Electronic energy + Delta-G solvation = -28116.416811 eV Core-core repulsion = 23790.973314 eV Total energy + Delta-G solvation = -4325.443497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.58537 -41.20334 -39.82225 -38.66647 -37.48037 -34.81307 -33.97774 -33.52105 -31.73633 -31.59648 -30.78500 -30.01372 -26.70410 -25.75180 -24.41860 -24.13437 -23.16097 -21.22948 -20.80239 -19.49255 -19.07008 -18.43270 -17.94983 -17.19042 -16.69821 -16.62547 -16.51713 -16.02741 -15.57291 -15.44984 -15.17816 -14.93282 -14.58239 -14.11897 -14.11536 -13.97986 -13.87531 -13.60371 -13.43002 -13.11601 -12.84093 -12.68994 -12.55495 -12.20814 -12.10163 -11.84215 -11.70803 -11.52807 -11.20234 -10.84359 -10.81429 -10.70484 -10.62976 -10.28480 -10.00681 -9.72172 -9.60992 -9.57508 -8.64472 -8.29004 -8.20927 -6.34125 -3.85767 -0.06848 0.21500 2.26319 2.43573 2.87315 2.98730 3.03816 3.05641 3.12238 3.67899 3.69778 3.95944 4.00928 4.07300 4.18255 4.19657 4.39259 4.62065 4.70245 4.82555 4.83994 4.94429 5.07625 5.17189 5.19715 5.27887 5.29868 5.45458 5.48358 5.58316 5.68776 5.73794 5.77688 5.83864 5.86198 5.97336 6.01766 6.17377 6.89190 6.92488 6.98654 7.45527 7.54502 7.61272 8.10984 8.55979 8.91632 9.38770 9.78384 10.78896 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.001893 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.773912 B =14787.853357 C =15636.981763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.048 0.952 4 N -0.660 5.660 5 C 0.049 3.951 6 C 0.449 3.551 7 O -0.564 6.564 8 N -0.590 5.590 9 C -0.306 4.306 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.880 5.880 13 Si 0.880 3.120 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.270 1.270 17 C 0.140 3.860 18 H 0.105 0.895 19 C -0.172 4.172 20 N -0.711 5.711 21 C 0.560 3.440 22 O -0.516 6.516 23 C -0.056 4.056 24 C -0.127 4.127 25 C 0.138 3.862 26 N -0.500 5.500 27 C 0.308 3.692 28 F -0.108 7.108 29 C -0.166 4.166 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.354 0.646 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.400 0.600 42 H 0.160 0.840 43 H 0.178 0.822 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 7.919 -28.742 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 H 0.066 0.934 4 N -0.296 5.296 5 C -0.084 4.084 6 C 0.234 3.766 7 O -0.445 6.445 8 N -0.229 5.229 9 C -0.434 4.434 10 H 0.138 0.862 11 C -0.162 4.162 12 N -0.520 5.520 13 Si 0.707 3.293 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.196 1.196 17 C 0.036 3.964 18 H 0.123 0.877 19 C -0.230 4.230 20 N -0.363 5.363 21 C 0.345 3.655 22 O -0.392 6.392 23 C -0.067 4.067 24 C -0.147 4.147 25 C -0.019 4.019 26 N -0.215 5.215 27 C 0.155 3.845 28 F -0.086 7.086 29 C -0.188 4.188 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.177 0.823 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.235 0.765 42 H 0.177 0.823 43 H 0.195 0.805 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.466 6.481 -29.103 30.736 hybrid contribution 0.561 2.510 0.897 2.724 sum -6.905 8.991 -28.206 30.399 Atomic orbital electron populations 1.21826 0.94001 1.03034 1.01071 1.21748 0.96646 0.95869 0.89113 0.93430 1.60163 1.35547 1.31723 1.02163 1.21762 1.01448 0.93939 0.91272 1.19665 0.84685 0.88240 0.83978 1.90576 1.53809 1.15800 1.84343 1.42200 1.60100 1.11026 1.09573 1.19434 1.40329 0.97963 0.85697 0.86244 1.25048 0.97463 0.98430 0.95247 1.69623 1.44973 1.36588 1.00809 0.86665 0.79344 0.84895 0.78417 1.19583 1.20178 1.19574 1.21185 0.94238 0.98401 0.82605 0.87723 1.22278 0.94758 1.02437 1.03542 1.45910 1.66752 1.14071 1.09529 1.17970 0.78311 0.86530 0.82704 1.90835 1.48935 1.14932 1.84481 1.20314 0.98189 0.92939 0.95244 1.22420 0.97849 1.02843 0.91632 1.22636 0.92653 0.87521 0.99094 1.66920 1.16890 1.10472 1.27241 1.17974 0.96425 0.80044 0.90092 1.91673 1.89649 1.30759 1.96568 1.22012 1.02118 0.95269 0.99355 0.91489 0.92148 0.92985 0.82341 0.93650 0.89352 0.79711 0.91585 0.90427 0.91481 0.92346 0.76489 0.82266 0.80540 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.26 37.16 0.34 -0.99 16 2 C 0.08 0.77 2.28 -67.71 -0.15 0.61 16 3 H 0.05 0.41 7.80 -51.93 -0.40 0.01 16 4 N -0.66 -9.33 5.93 -108.00 -0.64 -9.97 16 5 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 6 C 0.45 9.85 7.82 -10.99 -0.09 9.76 16 7 O -0.56 -14.79 15.78 5.55 0.09 -14.70 16 8 N -0.59 -13.68 5.09 -10.96 -0.06 -13.74 16 9 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 10 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 11 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 12 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 13 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 17 C 0.14 1.33 2.29 -67.93 -0.16 1.17 16 18 H 0.10 1.24 7.58 -51.93 -0.39 0.84 16 19 C -0.17 -1.63 9.25 37.16 0.34 -1.29 16 20 N -0.71 -5.21 4.34 -54.65 -0.24 -5.45 16 21 C 0.56 4.99 7.76 -12.18 -0.09 4.90 16 22 O -0.52 -6.43 16.11 5.36 0.09 -6.35 16 23 C -0.06 -0.39 5.91 -104.66 -0.62 -1.01 16 24 C -0.13 -0.76 9.68 -39.03 -0.38 -1.14 16 25 C 0.14 0.75 11.17 -17.60 -0.20 0.56 16 26 N -0.50 -4.03 10.35 -13.64 -0.14 -4.17 16 27 C 0.31 2.36 8.41 -17.39 -0.15 2.21 16 28 F -0.11 -0.89 17.29 2.25 0.04 -0.85 16 29 C -0.17 -0.97 9.59 -38.93 -0.37 -1.35 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.59 7.45 -51.93 -0.39 0.21 16 32 H 0.05 0.37 7.45 -51.93 -0.39 -0.02 16 33 H 0.35 5.22 5.87 -39.29 -0.23 4.99 16 34 H 0.05 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.09 1.21 7.44 -51.93 -0.39 0.83 16 36 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.40 1.89 6.53 -40.82 -0.27 1.62 16 42 H 0.16 0.83 7.74 -52.49 -0.41 0.42 16 43 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 44 H 0.15 0.49 6.53 -52.48 -0.34 0.15 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -34.97 374.94 -6.37 -41.34 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.43 Total: 12.12 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.79 Total: 6.50 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.30 Total: -58.00 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.05 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.04 Total: -0.85 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.97 -6.37 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505569542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.051 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds