Wall clock time and date at job start Tue Mar 31 2020 20:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 C 1.50694 * 109.47381 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00497 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00594 * 180.02562 * 8 6 5 10 10 H 1.08008 * 119.99964 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00381 * 179.97438 * 9 8 6 12 12 N 1.31414 * 119.99858 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 119.99887 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47303 * 89.99882 * 13 11 9 15 15 H 1.48497 * 109.47252 * 210.00386 * 13 11 9 16 16 H 1.48506 * 109.47217 * 330.00159 * 13 11 9 17 17 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 18 18 H 1.09002 * 109.47075 * 299.99262 * 17 2 1 19 19 C 1.53006 * 109.46711 * 180.02562 * 17 2 1 20 20 N 1.46492 * 109.47204 * 59.99987 * 17 2 1 21 21 C 1.34780 * 119.99930 * 204.99895 * 20 17 2 22 22 O 1.21507 * 119.99876 * 359.97438 * 21 20 17 23 23 C 1.48159 * 120.00090 * 180.02562 * 21 20 17 24 24 C 1.39893 * 120.90714 * 179.97438 * 23 21 20 25 25 C 1.38044 * 119.06503 * 179.97438 * 24 23 21 26 26 N 1.31878 * 120.93791 * 0.02562 * 25 24 23 27 27 C 1.31962 * 122.00915 * 359.97438 * 26 25 24 28 28 F 1.35108 * 119.58606 * 179.97438 * 27 26 25 29 29 C 1.38521 * 120.82880 * 359.72259 * 27 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.00904 * 110.99838 * 151.04516 * 4 2 1 34 34 H 1.08998 * 109.47346 * 299.99916 * 5 4 2 35 35 H 1.09007 * 109.47035 * 60.00148 * 5 4 2 36 36 H 0.97005 * 119.99767 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99774 * 179.97438 * 12 11 9 38 38 H 1.08996 * 109.47165 * 59.99875 * 19 17 2 39 39 H 1.09001 * 109.46726 * 179.97438 * 19 17 2 40 40 H 1.09002 * 109.46589 * 299.99365 * 19 17 2 41 41 H 0.96998 * 120.00353 * 24.99609 * 20 17 2 42 42 H 1.07998 * 120.46568 * 0.02902 * 24 23 21 43 43 H 1.07999 * 119.53242 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.51643 * 180.28631 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5218 3.5559 7 8 2.8669 -1.6990 3.4704 8 7 2.7274 0.1201 4.7327 9 6 3.1872 -0.5570 5.8326 10 1 3.4369 -1.6050 5.7562 11 6 3.3320 0.1050 7.0456 12 7 3.7723 -0.5442 8.1000 13 14 2.9008 1.9177 7.1777 14 1 1.4714 2.0605 7.5539 15 1 3.7517 2.5547 8.2147 16 1 3.1366 2.5793 5.8692 17 6 2.0399 -0.7212 -1.2493 18 1 1.6766 -1.7489 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0306 -2.4454 21 6 1.4228 -0.7030 -3.6064 22 8 1.7122 -1.8818 -3.6611 23 6 0.9295 -0.0044 -4.8162 24 6 0.7891 -0.6836 -6.0311 25 6 0.3255 0.0045 -7.1344 26 7 0.0170 1.2842 -7.0550 27 6 0.1342 1.9635 -5.9297 28 9 -0.1954 3.2735 -5.9039 29 6 0.5859 1.3490 -4.7734 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 2.9173 -1.1205 1.0286 34 1 2.7589 1.0461 2.1182 35 1 1.0870 0.6162 2.5525 36 1 2.5034 1.0615 4.8013 37 1 3.8737 -0.0819 8.9467 38 1 3.9329 -1.2359 -0.3590 39 1 3.9332 -1.2360 -2.1388 40 1 3.9336 0.3058 -1.2488 41 1 1.3208 0.9105 -2.4018 42 1 1.0390 -1.7317 -6.1046 43 1 0.2146 -0.5124 -8.0762 44 1 0.6755 1.9086 -3.8540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505569542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:12 Heat of formation + Delta-G solvation = -93.067209 kcal Electronic energy + Delta-G solvation = -28117.660439 eV Core-core repulsion = 23790.973314 eV Total energy + Delta-G solvation = -4326.687126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.13044 -41.79996 -40.57081 -40.18314 -38.52145 -36.10389 -35.52275 -34.17041 -33.73340 -32.16040 -31.63222 -30.80020 -28.19144 -26.36447 -25.74758 -24.86626 -24.01404 -21.93091 -21.58276 -21.28286 -20.33325 -19.67980 -18.52412 -17.97766 -17.56393 -17.36927 -17.22210 -17.10250 -16.69418 -16.60403 -16.18378 -15.83549 -15.52704 -15.44830 -15.01469 -14.89073 -14.70843 -14.55793 -14.37989 -14.24480 -14.13267 -13.94675 -13.54953 -13.27312 -13.16312 -12.93170 -12.69480 -12.61936 -12.40130 -12.34405 -11.96738 -11.63579 -11.54224 -11.50264 -11.25239 -10.84985 -10.42654 -10.29524 -10.24038 -10.17780 -9.35432 -8.40346 -6.01484 -0.58948 -0.24024 1.30735 1.37118 1.45788 1.63883 1.76013 1.96937 2.24205 2.39753 2.54196 2.75771 3.15961 3.19960 3.40794 3.49388 3.63314 3.72040 3.73837 3.92218 4.15020 4.17409 4.26883 4.38749 4.42832 4.43313 4.55498 4.57255 4.65398 4.70613 4.83515 4.86435 4.95251 5.00801 5.19968 5.26872 5.40074 5.41533 5.53971 5.91445 6.05251 6.31236 6.36695 6.45738 6.60504 6.89239 6.98362 7.40776 7.97832 8.77297 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.001893 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.773912 B =14787.853357 C =15636.981763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.079 0.921 4 N -0.683 5.683 5 C 0.063 3.937 6 C 0.447 3.553 7 O -0.615 6.615 8 N -0.590 5.590 9 C -0.329 4.329 10 H 0.054 0.946 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.258 1.258 15 H -0.277 1.277 16 H -0.228 1.228 17 C 0.148 3.852 18 H 0.075 0.925 19 C -0.167 4.167 20 N -0.695 5.695 21 C 0.562 3.438 22 O -0.558 6.558 23 C -0.066 4.066 24 C -0.125 4.125 25 C 0.142 3.858 26 N -0.524 5.524 27 C 0.290 3.710 28 F -0.115 7.115 29 C -0.150 4.150 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.347 0.653 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.416 0.584 42 H 0.165 0.835 43 H 0.208 0.792 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 11.950 -30.562 33.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 H 0.097 0.903 4 N -0.320 5.320 5 C -0.069 4.069 6 C 0.235 3.765 7 O -0.500 6.500 8 N -0.232 5.232 9 C -0.458 4.458 10 H 0.072 0.928 11 C -0.216 4.216 12 N -0.576 5.576 13 Si 0.786 3.214 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.151 1.151 17 C 0.043 3.957 18 H 0.094 0.906 19 C -0.226 4.226 20 N -0.348 5.348 21 C 0.349 3.651 22 O -0.437 6.437 23 C -0.077 4.077 24 C -0.146 4.146 25 C -0.015 4.015 26 N -0.239 5.239 27 C 0.137 3.863 28 F -0.094 7.094 29 C -0.171 4.171 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.226 0.774 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.255 0.745 42 H 0.182 0.818 43 H 0.225 0.775 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.703 10.562 -30.955 33.845 hybrid contribution 0.953 1.075 1.383 1.994 sum -7.750 11.637 -29.572 32.711 Atomic orbital electron populations 1.21846 0.93442 1.02037 1.02538 1.21788 0.96859 0.96841 0.87194 0.90291 1.60146 1.35499 1.32730 1.03588 1.21688 1.03251 0.93717 0.88216 1.21037 0.82278 0.87944 0.85260 1.90558 1.55353 1.18662 1.85420 1.42016 1.60583 1.11801 1.08791 1.18999 1.42428 0.96015 0.88360 0.92821 1.26157 0.96415 1.05169 0.93847 1.69815 1.46324 1.39653 1.01789 0.85344 0.79343 0.76345 0.80341 1.18217 1.20201 1.15086 1.20918 0.94152 0.97251 0.83407 0.90633 1.22220 0.94728 1.03276 1.02363 1.45697 1.65975 1.14699 1.08420 1.18221 0.77530 0.86039 0.83360 1.90824 1.50897 1.16832 1.85138 1.20185 0.99335 0.93477 0.94685 1.22597 0.97188 1.03178 0.91610 1.23099 0.91543 0.86740 1.00070 1.66933 1.17532 1.11528 1.27920 1.18162 0.97455 0.79967 0.90682 1.91651 1.89864 1.31262 1.96632 1.22130 1.00527 0.94636 0.99845 0.93786 0.91959 0.90214 0.83112 0.89908 0.86612 0.77398 0.91190 0.91778 0.92538 0.90396 0.74496 0.81769 0.77541 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.26 71.98 0.67 -1.56 16 2 C 0.08 1.39 2.28 44.92 0.10 1.49 16 3 H 0.08 0.91 7.80 -2.39 -0.02 0.89 16 4 N -0.68 -18.09 5.93 -495.59 -2.94 -21.03 16 5 C 0.06 1.74 5.96 85.56 0.51 2.25 16 6 C 0.45 19.40 7.82 87.66 0.69 20.09 16 7 O -0.62 -33.56 15.78 -3.07 -0.05 -33.61 16 8 N -0.59 -26.94 5.09 -306.98 -1.56 -28.50 16 9 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 10 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 11 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 12 N -0.94 -56.06 13.96 21.66 0.30 -55.76 16 13 Si 0.97 37.78 27.74 68.60 1.90 39.68 16 14 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 15 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 16 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 17 C 0.15 2.57 2.29 45.00 0.10 2.67 16 18 H 0.08 1.80 7.58 -2.39 -0.02 1.79 16 19 C -0.17 -2.98 9.25 71.98 0.67 -2.31 16 20 N -0.70 -8.44 4.34 -445.11 -1.93 -10.37 16 21 C 0.56 9.22 7.76 86.88 0.67 9.90 16 22 O -0.56 -13.87 16.11 -3.74 -0.06 -13.93 16 23 C -0.07 -0.79 5.91 -19.89 -0.12 -0.91 16 24 C -0.12 -1.31 9.68 22.62 0.22 -1.09 16 25 C 0.14 1.29 11.17 84.64 0.95 2.23 16 26 N -0.52 -7.57 10.35 -197.08 -2.04 -9.61 16 27 C 0.29 3.89 8.41 84.74 0.71 4.61 16 28 F -0.11 -1.71 17.29 44.97 0.78 -0.93 16 29 C -0.15 -1.36 9.59 22.69 0.22 -1.14 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.98 7.45 -2.39 -0.02 0.96 16 32 H 0.08 0.80 7.45 -2.39 -0.02 0.79 16 33 H 0.35 10.05 5.87 -89.69 -0.53 9.52 16 34 H 0.08 1.72 8.06 -2.39 -0.02 1.71 16 35 H 0.12 2.62 7.44 -2.38 -0.02 2.60 16 36 H 0.39 14.47 5.76 -92.70 -0.53 13.94 16 37 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.06 1.33 6.21 -2.39 -0.01 1.31 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.42 2.21 6.53 -92.71 -0.61 1.60 16 42 H 0.16 1.54 7.74 -2.91 -0.02 1.52 16 43 H 0.21 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.18 0.44 6.53 -2.91 -0.02 0.42 16 Total: -1.00 -83.93 374.94 0.46 -83.47 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.64 Total: 33.02 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 6.71 Total: 17.57 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -8.17 Total: -125.27 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.11 Total: -47.54 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -83.93 0.46 -83.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505569542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.600 kcal (2) G-P(sol) polarization free energy of solvation -83.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds