Wall clock time and date at job start Tue Mar 31 2020 20:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46739 * 2 1 4 4 C 1.52993 * 109.47505 * 239.99936 * 2 1 3 5 5 N 1.46495 * 109.47530 * 185.00076 * 4 2 1 6 6 C 1.34775 * 120.00324 * 180.02562 * 5 4 2 7 7 O 1.21532 * 120.00269 * 359.97438 * 6 5 4 8 8 C 1.47996 * 120.00028 * 179.97438 * 6 5 4 9 9 N 1.32808 * 119.75187 * 359.97438 * 8 6 5 10 10 C 1.31432 * 121.66838 * 180.02562 * 9 8 6 11 11 C 1.38685 * 120.98032 * 359.97438 * 10 9 8 12 12 C 1.38439 * 119.39355 * 0.27475 * 11 10 9 13 13 C 1.38969 * 118.46638 * 359.50238 * 12 11 10 14 14 F 1.35109 * 120.50270 * 180.24260 * 13 12 11 15 15 N 1.46905 * 109.46795 * 119.99586 * 2 1 3 16 16 C 1.46904 * 110.99885 * 58.95886 * 15 2 1 17 17 C 1.46894 * 111.00263 * 295.00111 * 15 2 1 18 18 C 1.50702 * 109.47020 * 190.00042 * 17 15 2 19 19 O 1.21281 * 120.00171 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99696 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99837 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99815 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99861 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99976 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47130 * 59.99313 * 25 23 21 27 27 H 1.48498 * 109.46792 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46906 * 299.99409 * 25 23 21 29 29 H 1.08998 * 109.47306 * 299.99761 * 1 2 3 30 30 H 1.08997 * 109.47174 * 60.00690 * 1 2 3 31 31 H 1.09005 * 109.46628 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47248 * 64.99703 * 4 2 1 33 33 H 1.09007 * 109.46748 * 305.00110 * 4 2 1 34 34 H 0.97005 * 119.99275 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.51032 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.30062 * 179.97438 * 11 10 9 37 37 H 1.08003 * 120.77043 * 179.74931 * 12 11 10 38 38 H 1.09007 * 109.47110 * 59.99943 * 16 15 2 39 39 H 1.08997 * 109.47156 * 179.97438 * 16 15 2 40 40 H 1.08993 * 109.46866 * 299.99804 * 16 15 2 41 41 H 1.09000 * 109.47320 * 310.00531 * 17 15 2 42 42 H 1.09006 * 109.46795 * 70.00155 * 17 15 2 43 43 H 0.96999 * 120.00096 * 359.97438 * 20 18 17 44 44 H 0.96994 * 119.99996 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4282 -2.1910 7 8 3.5690 -1.8842 -3.1418 8 6 5.6482 -1.5339 -2.1320 9 7 6.3036 -1.0335 -1.0909 10 6 7.6128 -1.1060 -1.0000 11 6 8.3650 -1.7127 -1.9948 12 6 7.7253 -2.2440 -3.1016 13 6 6.3400 -2.1584 -3.1707 14 9 5.6734 -2.6676 -4.2298 15 7 2.0197 -0.6924 1.1995 16 6 1.5283 -2.0761 1.2461 17 6 1.6487 0.0392 2.4181 18 6 2.3678 -0.5571 3.6006 19 8 3.1161 -1.4985 3.4436 20 7 2.1794 -0.0441 4.8326 21 6 2.8341 -0.5862 5.9084 22 1 3.5004 -1.4245 5.7685 23 6 2.6394 -0.0577 7.1786 24 7 1.8282 0.9621 7.3488 25 14 3.5320 -0.7959 8.6442 26 1 4.9983 -0.6934 8.4337 27 1 3.1562 -0.0567 9.8761 28 1 3.1511 -2.2240 8.7877 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7518 -0.1583 -2.1369 33 1 1.6055 -1.7198 -1.2950 34 1 3.9824 -0.4621 -0.4317 35 1 8.1103 -0.6868 -0.1379 36 1 9.4403 -1.7658 -1.9091 37 1 8.2895 -2.7178 -3.8913 38 1 1.8764 -2.6151 0.3648 39 1 1.9060 -2.5658 2.1437 40 1 0.4385 -2.0742 1.2640 41 1 1.9296 1.0871 2.3125 42 1 0.5721 -0.0345 2.5725 43 1 1.5812 0.7091 4.9581 44 1 1.6926 1.3312 8.2354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506026976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:29 Heat of formation + Delta-G solvation = -63.191832 kcal Electronic energy + Delta-G solvation = -29047.704501 eV Core-core repulsion = 24722.312869 eV Total energy + Delta-G solvation = -4325.391632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.14351 -40.65493 -39.43767 -38.65322 -37.25594 -34.38827 -33.81583 -32.93501 -31.47464 -31.23263 -30.74295 -27.93114 -26.77079 -25.38946 -24.74531 -23.87155 -23.49217 -20.84756 -20.07626 -19.05699 -18.22243 -17.83975 -17.81740 -17.38415 -16.55087 -16.19749 -15.86895 -15.76029 -15.41814 -14.86421 -14.69449 -14.65549 -14.32949 -14.07738 -13.92599 -13.63838 -13.47221 -13.45276 -13.15620 -12.98944 -12.74270 -12.68300 -12.25878 -11.84145 -11.75184 -11.44126 -11.19409 -11.19009 -10.90187 -10.72697 -10.47362 -10.44052 -10.33716 -10.20666 -9.81302 -9.45579 -9.35979 -8.95244 -8.44784 -7.96636 -7.83381 -6.40946 -3.81559 0.21468 0.67673 2.57038 2.96897 3.20064 3.25751 3.29952 3.50048 3.70302 3.88508 3.92166 3.98819 4.24518 4.28767 4.44490 4.50320 4.71550 4.94448 5.00700 5.14395 5.22637 5.27511 5.28244 5.39337 5.46440 5.52655 5.54365 5.58432 5.74610 5.79918 5.91887 5.93654 6.01861 6.16835 6.19007 6.29584 6.45073 6.59814 7.24964 7.27976 7.37192 7.55734 7.63952 8.07272 8.17924 8.63182 9.19259 9.55883 10.08049 10.76856 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.002713 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.034469 B =10316.335423 C =12114.333529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.064 3.936 3 H 0.090 0.910 4 C 0.129 3.871 5 N -0.688 5.688 6 C 0.565 3.435 7 O -0.534 6.534 8 C 0.050 3.950 9 N -0.422 5.422 10 C 0.091 3.909 11 C -0.121 4.121 12 C -0.121 4.121 13 C 0.106 3.894 14 F -0.107 7.107 15 N -0.510 5.510 16 C 0.017 3.983 17 C 0.045 3.955 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.423 0.577 35 H 0.173 0.827 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.020 0.980 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.391 0.609 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 -0.353 -18.917 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 H 0.108 0.892 4 C 0.005 3.995 5 N -0.340 5.340 6 C 0.349 3.651 7 O -0.411 6.411 8 C -0.089 4.089 9 N -0.133 5.133 10 C -0.069 4.069 11 C -0.141 4.141 12 C -0.148 4.148 13 C 0.083 3.917 14 F -0.085 7.085 15 N -0.233 5.233 16 C -0.131 4.131 17 C -0.086 4.086 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.262 0.738 35 H 0.190 0.810 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.038 0.962 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.700 -0.837 -18.905 20.074 hybrid contribution -0.196 -0.111 0.509 0.557 sum 6.504 -0.947 -18.396 19.535 Atomic orbital electron populations 1.22405 0.96520 1.02863 1.02725 1.22046 0.93494 0.98719 0.90309 0.89223 1.21472 0.79759 1.01197 0.97079 1.45671 1.07639 1.57461 1.23241 1.17653 0.85117 0.79178 0.83184 1.90833 1.68474 1.48291 1.33480 1.21439 0.95513 1.00229 0.91750 1.67720 1.10813 1.14116 1.20644 1.23008 0.88792 0.96273 0.98840 1.22345 1.02332 0.96256 0.93199 1.21710 0.92064 1.00681 1.00309 1.18677 0.90679 0.96536 0.85797 1.91621 1.80366 1.83697 1.52833 1.61811 1.58910 1.02449 1.00148 1.22596 0.96694 0.89464 1.04342 1.21876 0.98086 0.98444 0.90242 1.19733 0.86627 0.86883 0.83753 1.90490 1.40617 1.30148 1.84707 1.41858 1.41586 1.31254 1.05504 1.19637 1.23381 1.14827 0.84908 0.88007 1.25243 0.97340 0.96359 0.98984 1.69600 1.36673 1.23954 1.24224 0.85935 0.79642 0.78889 0.79856 1.19901 1.21024 1.19962 0.91598 0.91880 0.91796 0.90950 0.91101 0.73830 0.80959 0.83123 0.82883 0.92180 0.88633 0.96160 0.89443 0.93212 0.77549 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 8.50 37.16 0.32 -1.61 16 2 C 0.06 0.76 2.50 -67.71 -0.17 0.59 16 3 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 4 C 0.13 1.59 4.69 -4.05 -0.02 1.57 16 5 N -0.69 -9.53 5.38 -61.21 -0.33 -9.86 16 6 C 0.56 8.54 7.81 -12.26 -0.10 8.44 16 7 O -0.53 -9.31 15.32 5.34 0.08 -9.23 16 8 C 0.05 0.67 6.75 -82.96 -0.56 0.11 16 9 N -0.42 -5.24 9.54 -9.76 -0.09 -5.33 16 10 C 0.09 0.81 11.18 -17.56 -0.20 0.61 16 11 C -0.12 -0.80 10.11 -39.34 -0.40 -1.20 16 12 C -0.12 -0.97 10.16 -39.24 -0.40 -1.36 16 13 C 0.11 1.26 7.32 -38.82 -0.28 0.97 16 14 F -0.11 -1.45 15.55 2.25 0.04 -1.42 16 15 N -0.51 -7.90 3.93 -236.33 -0.93 -8.83 16 16 C 0.02 0.27 8.46 60.07 0.51 0.78 16 17 C 0.04 0.76 4.89 -4.98 -0.02 0.73 16 18 C 0.44 10.14 7.47 -10.98 -0.08 10.06 16 19 O -0.58 -15.02 13.91 5.56 0.08 -14.94 16 20 N -0.57 -14.00 5.29 -10.96 -0.06 -14.06 16 21 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 25 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.07 0.70 6.75 -51.93 -0.35 0.35 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.93 6.70 -51.92 -0.35 0.58 16 34 H 0.42 6.09 7.47 -40.82 -0.30 5.78 16 35 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.15 0.46 8.06 -52.49 -0.42 0.03 16 37 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 38 H 0.06 0.92 6.44 -51.92 -0.33 0.59 16 39 H 0.10 1.89 5.83 -51.93 -0.30 1.59 16 40 H 0.02 0.29 6.28 -51.93 -0.33 -0.04 16 41 H 0.09 1.33 8.00 -51.93 -0.42 0.92 16 42 H 0.05 0.78 6.94 -51.93 -0.36 0.42 16 43 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -33.39 370.48 -7.01 -40.41 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.44 Total: 13.58 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -1.64 Total: 11.87 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.68 Total: -61.69 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.39 -7.01 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506026976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.785 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds