Wall clock time and date at job start Tue Mar 31 2020 20:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46739 * 2 1 4 4 C 1.52993 * 109.47505 * 239.99936 * 2 1 3 5 5 N 1.46495 * 109.47530 * 185.00076 * 4 2 1 6 6 C 1.34775 * 120.00324 * 180.02562 * 5 4 2 7 7 O 1.21532 * 120.00269 * 359.97438 * 6 5 4 8 8 C 1.47996 * 120.00028 * 179.97438 * 6 5 4 9 9 N 1.32808 * 119.75187 * 359.97438 * 8 6 5 10 10 C 1.31432 * 121.66838 * 180.02562 * 9 8 6 11 11 C 1.38685 * 120.98032 * 359.97438 * 10 9 8 12 12 C 1.38439 * 119.39355 * 0.27475 * 11 10 9 13 13 C 1.38969 * 118.46638 * 359.50238 * 12 11 10 14 14 F 1.35109 * 120.50270 * 180.24260 * 13 12 11 15 15 N 1.46905 * 109.46795 * 119.99586 * 2 1 3 16 16 C 1.46904 * 110.99885 * 58.95886 * 15 2 1 17 17 C 1.46894 * 111.00263 * 295.00111 * 15 2 1 18 18 C 1.50702 * 109.47020 * 190.00042 * 17 15 2 19 19 O 1.21281 * 120.00171 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99696 * 180.02562 * 18 17 15 21 21 C 1.37100 * 119.99837 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99815 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99861 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99976 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47130 * 59.99313 * 25 23 21 27 27 H 1.48498 * 109.46792 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46906 * 299.99409 * 25 23 21 29 29 H 1.08998 * 109.47306 * 299.99761 * 1 2 3 30 30 H 1.08997 * 109.47174 * 60.00690 * 1 2 3 31 31 H 1.09005 * 109.46628 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47248 * 64.99703 * 4 2 1 33 33 H 1.09007 * 109.46748 * 305.00110 * 4 2 1 34 34 H 0.97005 * 119.99275 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.51032 * 179.97438 * 10 9 8 36 36 H 1.08002 * 120.30062 * 179.97438 * 11 10 9 37 37 H 1.08003 * 120.77043 * 179.74931 * 12 11 10 38 38 H 1.09007 * 109.47110 * 59.99943 * 16 15 2 39 39 H 1.08997 * 109.47156 * 179.97438 * 16 15 2 40 40 H 1.08993 * 109.46866 * 299.99804 * 16 15 2 41 41 H 1.09000 * 109.47320 * 310.00531 * 17 15 2 42 42 H 1.09006 * 109.46795 * 70.00155 * 17 15 2 43 43 H 0.96999 * 120.00096 * 359.97438 * 20 18 17 44 44 H 0.96994 * 119.99996 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4282 -2.1910 7 8 3.5690 -1.8842 -3.1418 8 6 5.6482 -1.5339 -2.1320 9 7 6.3036 -1.0335 -1.0909 10 6 7.6128 -1.1060 -1.0000 11 6 8.3650 -1.7127 -1.9948 12 6 7.7253 -2.2440 -3.1016 13 6 6.3400 -2.1584 -3.1707 14 9 5.6734 -2.6676 -4.2298 15 7 2.0197 -0.6924 1.1995 16 6 1.5283 -2.0761 1.2461 17 6 1.6487 0.0392 2.4181 18 6 2.3678 -0.5571 3.6006 19 8 3.1161 -1.4985 3.4436 20 7 2.1794 -0.0441 4.8326 21 6 2.8341 -0.5862 5.9084 22 1 3.5004 -1.4245 5.7685 23 6 2.6394 -0.0577 7.1786 24 7 1.8282 0.9621 7.3488 25 14 3.5320 -0.7959 8.6442 26 1 4.9983 -0.6934 8.4337 27 1 3.1562 -0.0567 9.8761 28 1 3.1511 -2.2240 8.7877 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7518 -0.1583 -2.1369 33 1 1.6055 -1.7198 -1.2950 34 1 3.9824 -0.4621 -0.4317 35 1 8.1103 -0.6868 -0.1379 36 1 9.4403 -1.7658 -1.9091 37 1 8.2895 -2.7178 -3.8913 38 1 1.8764 -2.6151 0.3648 39 1 1.9060 -2.5658 2.1437 40 1 0.4385 -2.0742 1.2640 41 1 1.9296 1.0871 2.3125 42 1 0.5721 -0.0345 2.5725 43 1 1.5812 0.7091 4.9581 44 1 1.6926 1.3312 8.2354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506026976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:28 Heat of formation + Delta-G solvation = -89.297622 kcal Electronic energy + Delta-G solvation = -29048.836533 eV Core-core repulsion = 24722.312869 eV Total energy + Delta-G solvation = -4326.523664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06379 -41.54652 -40.65127 -39.99730 -38.71832 -35.97195 -35.36296 -33.70323 -33.23005 -32.35619 -31.75723 -29.36446 -27.74648 -27.00217 -25.76727 -25.13852 -24.37410 -21.85198 -21.38073 -20.67753 -19.77492 -19.15920 -18.68776 -18.24272 -17.91044 -17.25610 -16.93647 -16.86807 -16.63233 -16.37688 -16.18783 -15.91387 -15.69293 -15.26632 -15.01316 -14.89466 -14.67297 -14.41307 -14.21995 -14.12952 -13.82850 -13.64041 -13.47231 -13.42227 -13.07408 -12.89737 -12.80476 -12.43560 -12.38120 -12.26448 -12.10885 -11.77990 -11.49931 -11.40624 -11.02666 -10.67897 -10.27515 -10.23403 -9.96773 -9.95153 -9.15707 -8.42812 -5.90706 -0.58686 -0.02015 1.41517 1.43072 1.53629 1.60840 2.00258 2.11818 2.30676 2.65146 2.75154 2.91544 3.10210 3.24622 3.46885 3.61750 3.68874 3.71511 3.87630 4.05835 4.26357 4.29690 4.35909 4.36760 4.54342 4.56005 4.58202 4.60852 4.67023 4.73700 4.79952 4.85694 4.91397 5.01090 5.19027 5.29084 5.39370 5.44518 5.49514 5.90206 6.08937 6.20641 6.36513 6.65835 6.67252 7.07515 7.17921 7.62442 8.18919 8.74493 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.002713 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.034469 B =10316.335423 C =12114.333529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.071 3.929 3 H 0.105 0.895 4 C 0.129 3.871 5 N -0.686 5.686 6 C 0.558 3.442 7 O -0.569 6.569 8 C 0.017 3.983 9 N -0.452 5.452 10 C 0.083 3.917 11 C -0.094 4.094 12 C -0.112 4.112 13 C 0.084 3.916 14 F -0.125 7.125 15 N -0.524 5.524 16 C 0.027 3.973 17 C 0.058 3.942 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.576 5.576 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.420 0.580 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.187 0.813 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.395 0.605 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 0.495 -19.202 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.037 4.037 3 H 0.123 0.877 4 C 0.006 3.994 5 N -0.336 5.336 6 C 0.343 3.657 7 O -0.449 6.449 8 C -0.120 4.120 9 N -0.163 5.163 10 C -0.078 4.078 11 C -0.114 4.114 12 C -0.138 4.138 13 C 0.061 3.939 14 F -0.103 7.103 15 N -0.248 5.248 16 C -0.121 4.121 17 C -0.072 4.072 18 C 0.231 3.769 19 O -0.498 6.498 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.258 0.742 35 H 0.215 0.785 36 H 0.217 0.783 37 H 0.204 0.796 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.229 0.771 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.009 0.036 -19.198 20.801 hybrid contribution -0.497 -0.380 0.557 0.837 sum 7.512 -0.344 -18.641 20.101 Atomic orbital electron populations 1.22363 0.94732 1.02950 1.03954 1.22086 0.94813 0.98737 0.88102 0.87716 1.21553 0.79053 1.00955 0.97886 1.45725 1.08195 1.56963 1.22764 1.18064 0.86281 0.78572 0.82779 1.90789 1.69496 1.49895 1.34673 1.21220 0.94694 1.02786 0.93315 1.67655 1.12760 1.15175 1.20733 1.23632 0.87889 0.96009 1.00283 1.22849 1.04359 0.93055 0.91099 1.22148 0.90265 0.99836 1.01528 1.19058 0.92311 0.97291 0.85275 1.91566 1.81089 1.84117 1.53576 1.61717 1.59966 1.02263 1.00833 1.22379 0.97568 0.89816 1.02311 1.21738 0.98242 0.99066 0.88197 1.20787 0.85700 0.85867 0.84596 1.90475 1.42152 1.31710 1.85450 1.41923 1.41973 1.31669 1.05820 1.19594 1.24485 1.15241 0.86579 0.90398 1.25983 0.97802 0.96568 1.00910 1.69662 1.37166 1.24467 1.25039 0.85036 0.78505 0.78142 0.76957 1.19633 1.19650 1.19905 0.91344 0.89662 0.92281 0.89620 0.92124 0.74174 0.78539 0.78325 0.79557 0.91971 0.92701 0.94377 0.86995 0.91200 0.77100 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.50 71.98 0.61 -2.70 16 2 C 0.07 1.59 2.50 44.91 0.11 1.70 16 3 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 4 C 0.13 3.15 4.69 86.38 0.40 3.55 16 5 N -0.69 -19.48 5.38 -465.84 -2.50 -21.98 16 6 C 0.56 17.67 7.81 86.83 0.68 18.34 16 7 O -0.57 -20.86 15.32 -3.82 -0.06 -20.92 16 8 C 0.02 0.48 6.75 41.90 0.28 0.76 16 9 N -0.45 -11.20 9.54 -184.79 -1.76 -12.96 16 10 C 0.08 1.30 11.18 84.86 0.95 2.25 16 11 C -0.09 -0.90 10.11 22.42 0.23 -0.68 16 12 C -0.11 -1.51 10.16 22.49 0.23 -1.28 16 13 C 0.08 1.99 7.32 22.76 0.17 2.16 16 14 F -0.13 -3.53 15.55 44.97 0.70 -2.83 16 15 N -0.52 -15.93 3.93 -901.61 -3.54 -19.48 16 16 C 0.03 0.89 8.46 127.69 1.08 1.97 16 17 C 0.06 1.91 4.89 85.56 0.42 2.33 16 18 C 0.44 20.48 7.47 87.66 0.66 21.14 16 19 O -0.61 -33.00 13.91 -3.03 -0.04 -33.05 16 20 N -0.58 -28.99 5.29 -306.99 -1.62 -30.61 16 21 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 22 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 25 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 H 0.07 1.25 6.75 -2.39 -0.02 1.23 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.15 6.38 -2.38 -0.02 1.14 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.61 6.70 -2.38 -0.02 1.59 16 34 H 0.42 12.39 7.47 -92.70 -0.69 11.70 16 35 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.20 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.06 1.96 6.44 -2.38 -0.02 1.95 16 39 H 0.05 2.25 5.83 -2.39 -0.01 2.24 16 40 H 0.04 1.08 6.28 -2.39 -0.02 1.06 16 41 H 0.11 3.16 8.00 -2.39 -0.02 3.14 16 42 H 0.07 2.05 6.94 -2.38 -0.02 2.03 16 43 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 44 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -76.73 370.48 0.22 -76.51 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.35 Total: 38.12 kcal Atomic # 6 Polarization: 24.56 SS G_CDS: 7.09 Total: 31.65 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -9.15 Total: -134.16 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.10 Total: -53.97 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.70 Total: -2.83 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -76.73 0.22 -76.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506026976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.784 kcal (2) G-P(sol) polarization free energy of solvation -76.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds