Wall clock time and date at job start Tue Mar 31 2020 20:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46719 * 2 1 4 4 C 1.47199 * 109.47198 * 119.99694 * 2 1 3 5 5 C 2.64595 * 109.47206 * 119.99877 * 2 1 3 6 6 C 4.07801 * 109.47232 * 119.99944 * 2 1 3 7 7 O 1.21612 * 119.99917 * 270.91213 * 6 5 4 8 8 N 1.34771 * 119.99763 * 90.90518 * 6 5 4 9 9 C 1.46504 * 120.00046 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46705 * 33.71731 * 9 8 6 11 11 C 1.53002 * 109.46921 * 273.71764 * 9 8 6 12 12 C 1.52993 * 109.47564 * 153.71695 * 9 8 6 13 13 C 1.53955 * 113.74190 * 280.96665 * 12 9 8 14 14 N 1.47574 * 86.11752 * 222.04582 * 13 12 9 15 15 C 1.34781 * 134.49456 * 204.64204 * 14 13 12 16 16 O 1.21281 * 119.99790 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99485 * 359.97438 * 15 14 13 18 18 S 1.81009 * 109.46742 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99748 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00398 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99645 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00273 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47072 * 90.00253 * 23 21 19 25 25 H 1.48503 * 109.47210 * 210.00289 * 23 21 19 26 26 H 1.48499 * 109.46958 * 330.00131 * 23 21 19 27 27 C 1.47580 * 91.01687 * 24.63844 * 14 13 12 28 28 H 1.08999 * 109.47429 * 299.99736 * 1 2 3 29 29 H 1.08994 * 109.47596 * 60.00032 * 1 2 3 30 30 H 1.08999 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47009 * 240.00375 * 2 1 3 32 32 H 1.09006 * 109.47337 * 60.00113 * 3 2 1 33 33 H 1.09006 * 109.46828 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47130 * 300.00111 * 3 2 1 35 35 H 0.96997 * 120.00621 * 359.72496 * 8 6 5 36 36 H 1.09001 * 109.46760 * 59.99813 * 11 9 8 37 37 H 1.09004 * 109.46970 * 179.97438 * 11 9 8 38 38 H 1.08993 * 109.47057 * 299.99954 * 11 9 8 39 39 H 1.09006 * 112.94396 * 52.69460 * 12 9 8 40 40 H 1.08999 * 113.76877 * 336.34869 * 13 12 9 41 41 H 1.09000 * 113.76617 * 107.74171 * 13 12 9 42 42 H 1.09000 * 109.47172 * 299.99520 * 17 15 14 43 43 H 1.08999 * 109.47453 * 60.00188 * 17 15 14 44 44 H 0.96993 * 119.99961 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.77652 * 221.05673 * 27 14 13 46 46 H 1.09000 * 113.77074 * 89.65929 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6938 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9223 3.3297 7 8 2.5820 -1.5167 4.4341 8 7 3.6792 -3.0073 3.2060 9 6 4.1672 -3.6984 4.4022 10 1 3.4126 -3.6432 5.1868 11 6 5.4562 -3.0313 4.8863 12 6 4.4469 -5.1644 4.0659 13 6 3.1826 -6.0416 4.0184 14 7 3.9811 -7.0558 4.7337 15 6 3.9244 -8.3980 4.8427 16 8 4.7388 -8.9861 5.5223 17 6 2.8486 -9.1677 4.1209 18 16 3.0379 -10.9349 4.4637 19 6 1.6913 -11.5747 3.5246 20 1 1.0535 -10.9036 2.9687 21 6 1.4509 -12.9415 3.4984 22 7 2.2286 -13.7597 4.1756 23 14 0.0238 -13.6199 2.5022 24 1 0.4835 -13.9257 1.1237 25 1 -0.4811 -14.8611 3.1425 26 1 -1.0657 -12.6122 2.4486 27 6 4.8667 -6.0102 5.2818 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 3.9211 -3.3334 2.3251 36 1 5.2569 -1.9868 5.1259 37 1 5.8190 -3.5451 5.7765 38 1 6.2107 -3.0864 4.1016 39 1 5.0994 -5.2850 3.2010 40 1 2.3511 -5.6457 4.6015 41 1 2.8930 -6.3407 3.0111 42 1 1.8698 -8.8341 4.4654 43 1 2.9349 -8.9940 3.0483 44 1 2.0608 -14.7148 4.1569 45 1 5.9217 -6.2842 5.2832 46 1 4.5299 -5.6050 6.2360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001509424589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:03 Heat of formation + Delta-G solvation = 0.539455 kcal Electronic energy + Delta-G solvation = -25207.524751 eV Core-core repulsion = 21418.817140 eV Total energy + Delta-G solvation = -3788.707611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74940 -39.69466 -37.71430 -36.90267 -35.41736 -32.74243 -32.44229 -31.33193 -29.95877 -27.92963 -27.78108 -26.21950 -25.45001 -25.13406 -23.38082 -21.80233 -20.99406 -19.16913 -18.88864 -17.70638 -17.04122 -16.69736 -16.59925 -15.64291 -15.54671 -15.29904 -15.17687 -14.81653 -14.68252 -14.22855 -14.03018 -13.99594 -13.68308 -13.11786 -12.90877 -12.83477 -12.78852 -12.61253 -12.51675 -12.45473 -12.13548 -12.01073 -11.95019 -11.82916 -11.24201 -11.11257 -11.07409 -11.03164 -10.82779 -10.77024 -10.76452 -10.52465 -9.83453 -9.63607 -9.33787 -9.07978 -8.62431 -8.25420 -6.51956 -6.22847 -3.93793 1.17095 1.87151 2.60734 2.72145 3.04284 3.14443 3.21127 3.23078 3.28893 3.53270 3.67561 4.02708 4.18900 4.31299 4.36771 4.50861 4.52889 4.58150 4.74074 4.89055 4.93566 5.01159 5.04013 5.09861 5.12346 5.21197 5.24979 5.25996 5.30543 5.33489 5.39726 5.46265 5.55910 5.57555 5.60847 5.63553 5.78803 5.85536 5.89922 6.00830 6.04826 6.12732 6.80664 6.99577 7.58246 7.71312 7.79120 8.33939 8.52426 9.22284 10.84601 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.002000 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.390416 B =13995.776400 C =16190.067619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.006 3.994 3 C -0.147 4.147 4 C -0.069 4.069 5 C -0.229 4.229 6 C 0.637 3.363 7 O -0.522 6.522 8 N -0.712 5.712 9 C 0.152 3.848 10 H 0.098 0.902 11 C -0.164 4.164 12 C -0.134 4.134 13 C 0.109 3.891 14 N -0.652 5.652 15 C 0.556 3.444 16 O -0.514 6.514 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.121 3.879 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.405 0.595 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 30.787 -8.949 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 C -0.204 4.204 4 C -0.072 4.072 5 C -0.231 4.231 6 C 0.423 3.577 7 O -0.399 6.399 8 N -0.363 5.363 9 C 0.048 3.952 10 H 0.116 0.884 11 C -0.223 4.223 12 C -0.154 4.154 13 C -0.015 4.015 14 N -0.391 5.391 15 C 0.346 3.654 16 O -0.388 6.388 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.002 4.002 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.240 0.760 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.840 29.736 -7.029 30.688 hybrid contribution -1.801 0.045 -1.872 2.598 sum 1.039 29.781 -8.901 31.100 Atomic orbital electron populations 1.21857 0.92598 1.03032 1.03020 1.18552 0.96469 0.95330 0.90807 1.21856 1.01705 0.93832 1.03029 1.22681 0.94462 0.95302 0.94716 1.20669 1.04255 1.02559 0.95662 1.14650 0.77965 0.79773 0.85270 1.90874 1.57658 1.65457 1.25905 1.45894 1.50805 1.29133 1.10487 1.21051 0.97205 0.89486 0.87505 0.88357 1.22177 0.96625 1.01571 1.01898 1.23530 0.98940 0.92251 1.00682 1.23212 0.94609 0.85556 0.98110 1.49980 1.33330 1.03972 1.51780 1.20046 0.85389 0.79448 0.80559 1.90715 1.40944 1.67230 1.39913 1.23474 0.99222 1.04280 1.02592 1.85405 1.41743 0.90605 1.65626 1.22854 1.15924 0.94905 1.34676 0.90943 1.24997 0.97106 0.95821 0.95660 1.70016 1.37209 1.03789 1.39217 0.86162 0.81190 0.78433 0.79681 1.20253 1.20716 1.19696 1.23003 0.96831 0.84396 0.96018 0.91864 0.91043 0.91825 0.87979 0.91878 0.91974 0.91046 0.76026 0.91821 0.90866 0.92055 0.87230 0.89611 0.89789 0.89360 0.89384 0.92158 0.89641 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.15 37.16 0.34 -0.27 16 2 C 0.01 0.03 3.30 -93.41 -0.31 -0.28 16 3 C -0.15 -0.54 9.15 37.16 0.34 -0.20 16 4 C -0.07 -0.52 12.56 -37.12 -0.47 -0.99 16 5 C -0.23 -2.12 13.61 -38.83 -0.53 -2.65 16 6 C 0.64 6.46 7.63 -14.33 -0.11 6.35 16 7 O -0.52 -7.19 16.73 5.27 0.09 -7.10 16 8 N -0.71 -5.03 5.06 -56.24 -0.28 -5.31 16 9 C 0.15 1.08 2.36 -67.93 -0.16 0.92 16 10 H 0.10 0.85 7.42 -51.93 -0.39 0.46 16 11 C -0.16 -1.07 9.35 37.16 0.35 -0.72 16 12 C -0.13 -0.99 3.45 -89.69 -0.31 -1.30 16 13 C 0.11 1.05 8.17 -2.97 -0.02 1.03 16 14 N -0.65 -9.14 3.61 -178.35 -0.64 -9.78 16 15 C 0.56 10.88 8.07 -10.98 -0.09 10.79 16 16 O -0.51 -12.15 16.59 5.56 0.09 -12.06 16 17 C -0.15 -3.03 5.91 36.00 0.21 -2.81 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.12 1.23 7.64 -2.98 -0.02 1.21 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.40 1.94 8.58 -40.82 -0.35 1.59 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.43 7.59 -51.93 -0.39 0.03 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.78 8.02 -51.93 -0.42 0.37 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 411.80 15.07 6.21 6.21 Total: -1.00 -37.69 411.80 -9.05 -46.74 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -7.43 Total: -3.76 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.58 Total: -1.98 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: -0.19 Total: -40.59 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.69 -9.05 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509424589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.278 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds