Wall clock time and date at job start Tue Mar 31 2020 20:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46719 * 2 1 4 4 C 1.47199 * 109.47198 * 119.99694 * 2 1 3 5 5 C 2.64595 * 109.47206 * 119.99877 * 2 1 3 6 6 C 4.07801 * 109.47232 * 119.99944 * 2 1 3 7 7 O 1.21612 * 119.99917 * 270.91213 * 6 5 4 8 8 N 1.34771 * 119.99763 * 90.90518 * 6 5 4 9 9 C 1.46504 * 120.00046 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46705 * 33.71731 * 9 8 6 11 11 C 1.53002 * 109.46921 * 273.71764 * 9 8 6 12 12 C 1.52993 * 109.47564 * 153.71695 * 9 8 6 13 13 C 1.53955 * 113.74190 * 280.96665 * 12 9 8 14 14 N 1.47574 * 86.11752 * 222.04582 * 13 12 9 15 15 C 1.34781 * 134.49456 * 204.64204 * 14 13 12 16 16 O 1.21281 * 119.99790 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99485 * 359.97438 * 15 14 13 18 18 S 1.81009 * 109.46742 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99748 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00398 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99645 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00273 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99740 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47072 * 90.00253 * 23 21 19 25 25 H 1.48503 * 109.47210 * 210.00289 * 23 21 19 26 26 H 1.48499 * 109.46958 * 330.00131 * 23 21 19 27 27 C 1.47580 * 91.01687 * 24.63844 * 14 13 12 28 28 H 1.08999 * 109.47429 * 299.99736 * 1 2 3 29 29 H 1.08994 * 109.47596 * 60.00032 * 1 2 3 30 30 H 1.08999 * 109.46815 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47009 * 240.00375 * 2 1 3 32 32 H 1.09006 * 109.47337 * 60.00113 * 3 2 1 33 33 H 1.09006 * 109.46828 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47130 * 300.00111 * 3 2 1 35 35 H 0.96997 * 120.00621 * 359.72496 * 8 6 5 36 36 H 1.09001 * 109.46760 * 59.99813 * 11 9 8 37 37 H 1.09004 * 109.46970 * 179.97438 * 11 9 8 38 38 H 1.08993 * 109.47057 * 299.99954 * 11 9 8 39 39 H 1.09006 * 112.94396 * 52.69460 * 12 9 8 40 40 H 1.08999 * 113.76877 * 336.34869 * 13 12 9 41 41 H 1.09000 * 113.76617 * 107.74171 * 13 12 9 42 42 H 1.09000 * 109.47172 * 299.99520 * 17 15 14 43 43 H 1.08999 * 109.47453 * 60.00188 * 17 15 14 44 44 H 0.96993 * 119.99961 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.77652 * 221.05673 * 27 14 13 46 46 H 1.09000 * 113.77074 * 89.65929 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0207 -0.6938 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9223 3.3297 7 8 2.5820 -1.5167 4.4341 8 7 3.6792 -3.0073 3.2060 9 6 4.1672 -3.6984 4.4022 10 1 3.4126 -3.6432 5.1868 11 6 5.4562 -3.0313 4.8863 12 6 4.4469 -5.1644 4.0659 13 6 3.1826 -6.0416 4.0184 14 7 3.9811 -7.0558 4.7337 15 6 3.9244 -8.3980 4.8427 16 8 4.7388 -8.9861 5.5223 17 6 2.8486 -9.1677 4.1209 18 16 3.0379 -10.9349 4.4637 19 6 1.6913 -11.5747 3.5246 20 1 1.0535 -10.9036 2.9687 21 6 1.4509 -12.9415 3.4984 22 7 2.2286 -13.7597 4.1756 23 14 0.0238 -13.6199 2.5022 24 1 0.4835 -13.9257 1.1237 25 1 -0.4811 -14.8611 3.1425 26 1 -1.0657 -12.6122 2.4486 27 6 4.8667 -6.0102 5.2818 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 3.9211 -3.3334 2.3251 36 1 5.2569 -1.9868 5.1259 37 1 5.8190 -3.5451 5.7765 38 1 6.2107 -3.0864 4.1016 39 1 5.0994 -5.2850 3.2010 40 1 2.3511 -5.6457 4.6015 41 1 2.8930 -6.3407 3.0111 42 1 1.8698 -8.8341 4.4654 43 1 2.9349 -8.9940 3.0483 44 1 2.0608 -14.7148 4.1569 45 1 5.9217 -6.2842 5.2832 46 1 4.5299 -5.6050 6.2360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509424589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:02 Heat of formation + Delta-G solvation = -24.985450 kcal Electronic energy + Delta-G solvation = -25208.631594 eV Core-core repulsion = 21418.817140 eV Total energy + Delta-G solvation = -3789.814454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66303 -40.64917 -39.02929 -37.32045 -36.25896 -34.60768 -33.40363 -32.27618 -31.14682 -29.01806 -28.06627 -27.71980 -27.04303 -25.80074 -24.08152 -22.42952 -21.71761 -20.49980 -19.58119 -19.54009 -18.03114 -17.78547 -17.21924 -16.92526 -16.84270 -16.59405 -16.21816 -15.83585 -15.73513 -15.48437 -14.93139 -14.77019 -14.64400 -14.35920 -14.09327 -13.77911 -13.63243 -13.41522 -13.20725 -13.10801 -13.06541 -12.94776 -12.90202 -12.78746 -12.62366 -12.45679 -12.32211 -11.90796 -11.88923 -11.75682 -11.51609 -11.34846 -11.16094 -11.15668 -10.93805 -10.31942 -10.22754 -9.78842 -8.70665 -8.36558 -6.15766 0.48766 1.18864 1.26068 1.41397 1.41620 1.52549 1.55638 1.93058 1.99585 2.25375 2.45623 2.97448 3.06290 3.20008 3.33024 3.59616 3.63608 4.01608 4.05315 4.09711 4.13603 4.17657 4.22051 4.35357 4.42075 4.42946 4.47834 4.51875 4.55392 4.66645 4.77147 4.77898 4.86464 4.92991 4.93755 4.99432 5.11807 5.14573 5.32011 5.32890 5.33915 5.39364 5.39909 6.17669 6.20301 6.37321 6.53756 7.03505 7.04301 7.07884 8.72770 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.002000 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.390416 B =13995.776400 C =16190.067619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.003 3.997 3 C -0.146 4.146 4 C -0.047 4.047 5 C -0.271 4.271 6 C 0.637 3.363 7 O -0.568 6.568 8 N -0.695 5.695 9 C 0.158 3.842 10 H 0.085 0.915 11 C -0.161 4.161 12 C -0.104 4.104 13 C 0.102 3.898 14 N -0.650 5.650 15 C 0.553 3.447 16 O -0.568 6.568 17 C -0.120 4.120 18 S -0.151 6.151 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.259 1.259 27 C 0.113 3.887 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.419 0.581 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.272 0.728 45 H 0.087 0.913 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 32.783 -11.668 34.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.049 4.049 5 C -0.274 4.274 6 C 0.425 3.575 7 O -0.449 6.449 8 N -0.346 5.346 9 C 0.053 3.947 10 H 0.103 0.897 11 C -0.219 4.219 12 C -0.124 4.124 13 C -0.020 4.020 14 N -0.386 5.386 15 C 0.342 3.658 16 O -0.447 6.447 17 C -0.271 4.271 18 S 0.076 5.924 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.183 1.183 27 C -0.009 4.009 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.256 0.744 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.857 31.791 -9.792 33.316 hybrid contribution -1.468 -0.374 -1.061 1.849 sum 0.389 31.417 -10.853 33.241 Atomic orbital electron populations 1.21874 0.92174 1.02883 1.03541 1.18846 0.96732 0.95737 0.90171 1.21868 1.01685 0.93215 1.03537 1.23434 0.92791 0.93913 0.94770 1.20712 1.06060 1.04234 0.96422 1.14796 0.77762 0.80050 0.84915 1.90845 1.59600 1.66905 1.27548 1.45757 1.49568 1.28048 1.11225 1.20953 0.97292 0.89201 0.87217 0.89661 1.22150 0.96421 1.00592 1.02786 1.23310 0.97629 0.91448 0.99977 1.23588 0.95603 0.84207 0.98594 1.50005 1.34472 1.02874 1.51255 1.19749 0.84548 0.81323 0.80184 1.90687 1.42765 1.68971 1.42305 1.23273 1.00635 0.99164 1.03994 1.85581 1.42795 0.97280 1.66695 1.23183 1.15942 0.95636 1.34718 0.89976 1.26153 1.00191 0.96085 0.96725 1.70182 1.39367 1.04213 1.40923 0.84935 0.77254 0.77745 0.77926 1.19090 1.20249 1.18251 1.23341 0.96517 0.83189 0.97828 0.92962 0.88962 0.92309 0.85692 0.92972 0.92035 0.88983 0.74394 0.93333 0.90005 0.90624 0.85098 0.88658 0.88269 0.88032 0.87491 0.91925 0.89467 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.15 71.98 0.66 -0.25 16 2 C 0.00 0.02 3.30 -12.60 -0.04 -0.02 16 3 C -0.15 -0.76 9.15 71.98 0.66 -0.10 16 4 C -0.05 -0.64 12.56 31.13 0.39 -0.25 16 5 C -0.27 -4.83 13.61 30.02 0.41 -4.42 16 6 C 0.64 12.59 7.63 85.49 0.65 13.24 16 7 O -0.57 -15.89 16.73 -4.07 -0.07 -15.96 16 8 N -0.70 -8.54 5.06 -450.11 -2.28 -10.82 16 9 C 0.16 1.93 2.36 44.99 0.11 2.04 16 10 H 0.09 1.36 7.42 -2.39 -0.02 1.34 16 11 C -0.16 -1.79 9.35 71.98 0.67 -1.12 16 12 C -0.10 -1.24 3.45 -10.13 -0.03 -1.27 16 13 C 0.10 1.69 8.17 86.48 0.71 2.40 16 14 N -0.65 -17.18 3.61 -836.56 -3.02 -20.19 16 15 C 0.55 21.56 8.07 87.66 0.71 22.26 16 16 O -0.57 -27.62 16.59 -3.03 -0.05 -27.67 16 17 C -0.12 -4.95 5.91 71.24 0.42 -4.52 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 19 C -0.55 -31.56 9.50 67.95 0.65 -30.92 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 23 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.11 2.08 7.64 86.48 0.66 2.74 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 35 H 0.42 2.89 8.58 -92.71 -0.80 2.10 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.78 7.59 -2.38 -0.02 0.76 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.10 1.50 8.02 -2.39 -0.02 1.48 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -86.17 411.80 3.00 -83.17 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.19 Total: 10.43 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 7.08 Total: 1.03 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -5.01 Total: -86.96 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.12 Total: -43.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -86.17 3.00 -83.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509424589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.185 kcal (2) G-P(sol) polarization free energy of solvation -86.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds