Wall clock time and date at job start Tue Mar 31 2020 20:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46829 * 74.78722 * 3 2 1 5 5 C 1.50700 * 112.90758 * 54.26100 * 4 3 2 6 6 O 1.21275 * 119.99961 * 256.07681 * 5 4 3 7 7 N 1.34780 * 120.00216 * 76.08049 * 5 4 3 8 8 C 1.46492 * 120.00065 * 185.61050 * 7 5 4 9 9 C 1.53005 * 109.47158 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.47067 * 65.00100 * 9 8 7 11 11 C 1.53002 * 109.47114 * 184.99768 * 9 8 7 12 12 N 1.46502 * 109.46904 * 304.99525 * 9 8 7 13 13 C 1.34771 * 119.99723 * 154.99887 * 12 9 8 14 14 O 1.21287 * 120.00166 * 0.02562 * 13 12 9 15 15 C 1.50700 * 120.00233 * 180.02562 * 13 12 9 16 16 S 1.80994 * 109.47385 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00047 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00382 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99627 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47240 * 90.00037 * 21 19 17 23 23 H 1.48501 * 109.47189 * 210.00038 * 21 19 17 24 24 H 1.48505 * 109.47475 * 329.99788 * 21 19 17 25 25 C 1.53786 * 113.61232 * 185.50760 * 4 3 2 26 26 C 1.53782 * 87.08040 * 89.11895 * 25 4 3 27 27 C 1.53782 * 113.61625 * 283.00616 * 4 3 2 28 28 H 4.44645 * 5.63356 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47444 * 314.78828 * 3 2 1 30 30 H 1.09002 * 109.47210 * 194.78658 * 3 2 1 31 31 H 0.96999 * 119.99513 * 5.60668 * 7 5 4 32 32 H 1.09002 * 109.47127 * 299.99575 * 8 7 5 33 33 H 1.08996 * 109.47583 * 59.99595 * 8 7 5 34 34 H 1.09006 * 109.47104 * 299.99964 * 11 9 8 35 35 H 1.09000 * 109.47241 * 59.99854 * 11 9 8 36 36 H 1.08994 * 109.46837 * 180.02562 * 11 9 8 37 37 H 0.96998 * 119.99513 * 335.00437 * 12 9 8 38 38 H 1.08998 * 109.46634 * 299.99997 * 15 13 12 39 39 H 1.08994 * 109.46939 * 59.99895 * 15 13 12 40 40 H 0.97001 * 120.00435 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.61315 * 334.57115 * 25 4 3 42 42 H 1.08994 * 113.61609 * 203.66277 * 25 4 3 43 43 H 1.08997 * 113.61906 * 139.97952 * 26 25 4 44 44 H 1.09003 * 113.61543 * 270.88664 * 26 25 4 45 45 H 1.08997 * 113.61543 * 156.33798 * 27 4 3 46 46 H 1.08997 * 113.68895 * 25.44187 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.3776 -1.3920 5 6 2.5868 0.4933 -2.4821 6 8 1.7096 0.0669 -3.2029 7 7 3.0524 1.7461 -2.6560 8 6 2.4172 2.6347 -3.6322 9 6 3.1322 3.9874 -3.6315 10 1 4.1558 3.8575 -3.9831 11 6 2.3936 4.9552 -4.5583 12 7 3.1483 4.5306 -2.2710 13 6 4.1054 5.4066 -1.9065 14 8 4.9531 5.7456 -2.7049 15 6 4.1223 5.9649 -0.5068 16 16 5.5169 7.1048 -0.3288 17 6 5.3002 7.5936 1.3501 18 1 4.4819 7.1907 1.9285 19 6 6.1817 8.4956 1.9297 20 7 7.1799 8.9855 1.2253 21 14 5.9515 9.0143 3.7094 22 1 6.7039 8.0904 4.5956 23 1 6.4591 10.3979 3.8914 24 1 4.5082 8.9670 4.0561 25 6 4.6839 -0.5372 -1.4658 26 6 4.4694 -2.0117 -1.0854 27 6 3.0631 -1.8826 -1.6942 28 1 -1.0500 -0.0002 0.0000 29 1 3.0097 -0.7231 0.7293 30 1 3.0089 0.9945 0.2623 31 1 3.8081 2.0593 -2.1347 32 1 2.4822 2.1895 -4.6250 33 1 1.3699 2.7776 -3.3660 34 1 2.3816 4.5510 -5.5706 35 1 1.3701 5.0851 -4.2068 36 1 2.9033 5.9186 -4.5581 37 1 2.4701 4.2596 -1.6326 38 1 3.1910 6.4985 -0.3173 39 1 4.2258 5.1491 0.2085 40 1 7.7957 9.6162 1.6301 41 1 5.2198 0.0355 -0.7089 42 1 5.0893 -0.3995 -2.4681 43 1 5.1177 -2.7010 -1.6264 44 1 4.4650 -2.1890 -0.0099 45 1 3.0255 -2.1126 -2.7590 46 1 2.2909 -2.3972 -1.1224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533644778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:14 Heat of formation + Delta-G solvation = -12.341804 kcal Electronic energy + Delta-G solvation = -26669.444051 eV Core-core repulsion = 22880.177867 eV Total energy + Delta-G solvation = -3789.266184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03081 -39.55184 -38.16236 -36.30207 -33.95199 -33.77846 -32.46790 -31.52134 -29.55610 -28.63630 -27.08519 -25.97909 -25.52457 -24.82805 -21.86155 -21.25690 -20.40095 -19.38576 -18.58265 -17.88336 -17.17774 -16.63025 -16.49174 -16.01337 -15.80835 -15.07787 -14.92970 -14.83812 -14.74166 -14.54361 -14.11311 -13.62481 -13.44017 -13.32624 -13.14692 -12.98116 -12.75522 -12.64020 -12.58800 -12.15724 -12.05108 -11.85633 -11.61944 -11.25583 -11.17984 -11.09263 -11.06312 -10.79617 -10.78271 -10.39872 -10.33853 -9.85664 -9.78389 -9.50530 -9.29461 -9.11589 -9.03711 -8.28620 -6.54603 -6.25590 -3.96478 2.37860 2.59712 2.66473 2.85209 2.96858 3.03460 3.19462 3.25234 3.28956 3.64345 3.88383 4.03991 4.16708 4.32914 4.36624 4.40321 4.45292 4.65657 4.89652 5.05814 5.06868 5.09775 5.13421 5.18319 5.27450 5.33908 5.38321 5.40535 5.48820 5.53218 5.54949 5.61963 5.65538 5.68743 5.81973 5.82668 5.90307 5.99018 6.05314 6.08487 6.21167 6.53773 7.25634 7.42832 7.55687 7.60275 8.00031 8.31263 8.51821 9.19988 10.81765 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.002704 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.141984 B =10352.242013 C =11545.536688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.192 4.192 3 C 0.018 3.982 4 C -0.102 4.102 5 C 0.533 3.467 6 O -0.536 6.536 7 N -0.727 5.727 8 C 0.113 3.887 9 C 0.133 3.867 10 H 0.095 0.905 11 C -0.161 4.161 12 N -0.737 5.737 13 C 0.533 3.467 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.130 4.130 26 C -0.141 4.141 27 C -0.110 4.110 28 H 0.215 0.785 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.405 0.595 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 -20.531 -5.424 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 C -0.019 4.019 4 C -0.106 4.106 5 C 0.319 3.681 6 O -0.412 6.412 7 N -0.380 5.380 8 C -0.011 4.011 9 C 0.027 3.973 10 H 0.113 0.887 11 C -0.220 4.220 12 N -0.392 5.392 13 C 0.319 3.681 14 O -0.388 6.388 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.167 4.167 26 C -0.179 4.179 27 C -0.148 4.148 28 H 0.232 0.768 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.240 0.760 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.301 -20.130 -7.301 23.346 hybrid contribution -1.400 0.123 2.604 2.959 sum -10.701 -20.007 -4.698 23.171 Atomic orbital electron populations 1.24856 0.95930 1.00595 0.99648 1.22749 0.94236 1.00886 1.01306 1.18423 0.85385 1.03681 0.94383 1.22116 0.97552 0.96915 0.93975 1.20280 0.81960 0.81461 0.84430 1.90684 1.31008 1.73102 1.46400 1.45994 1.36182 1.13360 1.42467 1.21693 0.97164 0.88558 0.93703 1.21136 1.01303 0.91246 0.83606 0.88680 1.22115 1.00594 1.00403 0.98902 1.46154 1.32200 1.47561 1.13309 1.20337 0.80253 0.77869 0.89609 1.90713 1.37321 1.57624 1.53110 1.23539 1.07406 1.04441 0.95104 1.85397 1.30450 1.51214 1.16144 1.22861 1.16980 1.31457 0.97158 0.90948 1.24985 0.94464 0.95194 0.98882 1.70008 1.14440 1.29239 1.36566 0.86178 0.78566 0.78002 0.82820 1.20245 1.20743 1.19691 1.23041 0.92712 0.97755 1.03208 1.22864 0.97100 0.96493 1.01402 1.22830 0.97435 0.92291 1.02212 0.76778 0.88201 0.88624 0.76007 0.90046 0.91003 0.91537 0.92238 0.91029 0.76767 0.89253 0.89278 0.92151 0.89868 0.89220 0.90762 0.89604 0.89271 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.19 -1.96 12.43 -37.12 -0.46 -2.42 16 3 C 0.02 0.14 5.10 -29.52 -0.15 -0.01 16 4 C -0.10 -0.85 0.82 -154.84 -0.13 -0.98 16 5 C 0.53 5.77 5.91 -10.98 -0.06 5.70 16 6 O -0.54 -7.73 16.44 5.56 0.09 -7.64 16 7 N -0.73 -6.76 5.34 -60.30 -0.32 -7.08 16 8 C 0.11 1.04 5.24 -4.04 -0.02 1.02 16 9 C 0.13 1.37 2.73 -67.93 -0.19 1.19 16 10 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 11 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 12 N -0.74 -8.61 4.52 -53.80 -0.24 -8.85 16 13 C 0.53 8.99 7.81 -10.99 -0.09 8.91 16 14 O -0.51 -10.72 15.53 5.55 0.09 -10.63 16 15 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 21 Si 0.92 20.98 29.55 -169.99 -5.02 15.95 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.13 -0.86 6.99 -25.92 -0.18 -1.04 16 26 C -0.14 -0.85 7.73 -25.92 -0.20 -1.05 16 27 C -0.11 -0.89 6.79 -25.92 -0.18 -1.07 16 28 H 0.22 1.48 7.80 -54.09 -0.42 1.06 16 29 H 0.10 0.61 7.31 -51.93 -0.38 0.23 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.40 3.45 7.96 -40.82 -0.32 3.13 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.40 3.84 8.60 -40.82 -0.35 3.49 16 38 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 39 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.43 7.61 -51.93 -0.40 0.04 16 45 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 46 H 0.07 0.61 8.05 -51.93 -0.42 0.20 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -35.55 406.35 -8.36 -43.92 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.29 Total: 4.51 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.31 Total: -7.64 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.17 Total: -40.85 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.55 -8.36 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533644778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.574 kcal (2) G-P(sol) polarization free energy of solvation -35.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds