Wall clock time and date at job start Tue Mar 31 2020 20:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46829 * 74.78722 * 3 2 1 5 5 C 1.50700 * 112.90758 * 54.26100 * 4 3 2 6 6 O 1.21275 * 119.99961 * 256.07681 * 5 4 3 7 7 N 1.34780 * 120.00216 * 76.08049 * 5 4 3 8 8 C 1.46492 * 120.00065 * 185.61050 * 7 5 4 9 9 C 1.53005 * 109.47158 * 179.97438 * 8 7 5 10 10 H 1.09003 * 109.47067 * 65.00100 * 9 8 7 11 11 C 1.53002 * 109.47114 * 184.99768 * 9 8 7 12 12 N 1.46502 * 109.46904 * 304.99525 * 9 8 7 13 13 C 1.34771 * 119.99723 * 154.99887 * 12 9 8 14 14 O 1.21287 * 120.00166 * 0.02562 * 13 12 9 15 15 C 1.50700 * 120.00233 * 180.02562 * 13 12 9 16 16 S 1.80994 * 109.47385 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00047 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00008 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00382 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99627 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47240 * 90.00037 * 21 19 17 23 23 H 1.48501 * 109.47189 * 210.00038 * 21 19 17 24 24 H 1.48505 * 109.47475 * 329.99788 * 21 19 17 25 25 C 1.53786 * 113.61232 * 185.50760 * 4 3 2 26 26 C 1.53782 * 87.08040 * 89.11895 * 25 4 3 27 27 C 1.53782 * 113.61625 * 283.00616 * 4 3 2 28 28 H 4.44645 * 5.63356 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47444 * 314.78828 * 3 2 1 30 30 H 1.09002 * 109.47210 * 194.78658 * 3 2 1 31 31 H 0.96999 * 119.99513 * 5.60668 * 7 5 4 32 32 H 1.09002 * 109.47127 * 299.99575 * 8 7 5 33 33 H 1.08996 * 109.47583 * 59.99595 * 8 7 5 34 34 H 1.09006 * 109.47104 * 299.99964 * 11 9 8 35 35 H 1.09000 * 109.47241 * 59.99854 * 11 9 8 36 36 H 1.08994 * 109.46837 * 180.02562 * 11 9 8 37 37 H 0.96998 * 119.99513 * 335.00437 * 12 9 8 38 38 H 1.08998 * 109.46634 * 299.99997 * 15 13 12 39 39 H 1.08994 * 109.46939 * 59.99895 * 15 13 12 40 40 H 0.97001 * 120.00435 * 179.97438 * 20 19 17 41 41 H 1.09000 * 113.61315 * 334.57115 * 25 4 3 42 42 H 1.08994 * 113.61609 * 203.66277 * 25 4 3 43 43 H 1.08997 * 113.61906 * 139.97952 * 26 25 4 44 44 H 1.09003 * 113.61543 * 270.88664 * 26 25 4 45 45 H 1.08997 * 113.61543 * 156.33798 * 27 4 3 46 46 H 1.08997 * 113.68895 * 25.44187 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.3776 -1.3920 5 6 2.5868 0.4933 -2.4821 6 8 1.7096 0.0669 -3.2029 7 7 3.0524 1.7461 -2.6560 8 6 2.4172 2.6347 -3.6322 9 6 3.1322 3.9874 -3.6315 10 1 4.1558 3.8575 -3.9831 11 6 2.3936 4.9552 -4.5583 12 7 3.1483 4.5306 -2.2710 13 6 4.1054 5.4066 -1.9065 14 8 4.9531 5.7456 -2.7049 15 6 4.1223 5.9649 -0.5068 16 16 5.5169 7.1048 -0.3288 17 6 5.3002 7.5936 1.3501 18 1 4.4819 7.1907 1.9285 19 6 6.1817 8.4956 1.9297 20 7 7.1799 8.9855 1.2253 21 14 5.9515 9.0143 3.7094 22 1 6.7039 8.0904 4.5956 23 1 6.4591 10.3979 3.8914 24 1 4.5082 8.9670 4.0561 25 6 4.6839 -0.5372 -1.4658 26 6 4.4694 -2.0117 -1.0854 27 6 3.0631 -1.8826 -1.6942 28 1 -1.0500 -0.0002 0.0000 29 1 3.0097 -0.7231 0.7293 30 1 3.0089 0.9945 0.2623 31 1 3.8081 2.0593 -2.1347 32 1 2.4822 2.1895 -4.6250 33 1 1.3699 2.7776 -3.3660 34 1 2.3816 4.5510 -5.5706 35 1 1.3701 5.0851 -4.2068 36 1 2.9033 5.9186 -4.5581 37 1 2.4701 4.2596 -1.6326 38 1 3.1910 6.4985 -0.3173 39 1 4.2258 5.1491 0.2085 40 1 7.7957 9.6162 1.6301 41 1 5.2198 0.0355 -0.7089 42 1 5.0893 -0.3995 -2.4681 43 1 5.1177 -2.7010 -1.6264 44 1 4.4650 -2.1890 -0.0099 45 1 3.0255 -2.1126 -2.7590 46 1 2.2909 -2.3972 -1.1224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533644778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:13 Heat of formation + Delta-G solvation = -36.393736 kcal Electronic energy + Delta-G solvation = -26670.487021 eV Core-core repulsion = 22880.177867 eV Total energy + Delta-G solvation = -3790.309154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77312 -40.77355 -38.98196 -37.37006 -34.81911 -34.58163 -34.55908 -32.67483 -30.26781 -29.94675 -27.85614 -27.63345 -26.56404 -25.50352 -22.89356 -21.99536 -21.60482 -20.07467 -19.83978 -19.23116 -18.00982 -17.88184 -17.39974 -17.02273 -16.85788 -16.51299 -16.36390 -16.03243 -15.74902 -15.42739 -15.17900 -14.76272 -14.56072 -14.25955 -14.08331 -14.05721 -13.93768 -13.51544 -13.35635 -13.25398 -13.13915 -13.00160 -12.87811 -12.67952 -12.57696 -12.29169 -12.07005 -11.83522 -11.70643 -11.37755 -11.12454 -11.07016 -11.00787 -10.93031 -10.59678 -10.24262 -10.19204 -10.14284 -8.63192 -8.32987 -6.09928 1.28705 1.43412 1.48414 1.56068 1.58767 1.63004 1.86940 1.92876 2.09523 2.27356 2.31864 3.01487 3.27207 3.33943 3.41242 3.55186 3.74457 3.77750 3.89112 3.96559 4.00929 4.03654 4.24269 4.35092 4.52627 4.54541 4.56166 4.63459 4.67267 4.71879 4.75170 4.81863 4.88538 4.98163 5.03675 5.09388 5.12838 5.21411 5.23205 5.37623 5.44073 5.46072 5.48012 6.21652 6.45438 6.48514 6.71701 7.09014 7.18283 7.24530 8.75930 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.002704 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.141984 B =10352.242013 C =11545.536688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.212 4.212 3 C 0.016 3.984 4 C -0.102 4.102 5 C 0.531 3.469 6 O -0.576 6.576 7 N -0.721 5.721 8 C 0.122 3.878 9 C 0.139 3.861 10 H 0.082 0.918 11 C -0.158 4.158 12 N -0.710 5.710 13 C 0.540 3.460 14 O -0.558 6.558 15 C -0.131 4.131 16 S -0.146 6.146 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.995 3.005 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.259 1.259 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.116 4.116 28 H 0.234 0.766 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.413 0.587 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 -21.662 -3.829 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.212 4.212 3 C -0.020 4.020 4 C -0.105 4.105 5 C 0.318 3.682 6 O -0.455 6.455 7 N -0.373 5.373 8 C -0.002 4.002 9 C 0.034 3.966 10 H 0.100 0.900 11 C -0.217 4.217 12 N -0.365 5.365 13 C 0.326 3.674 14 O -0.436 6.436 15 C -0.283 4.283 16 S 0.081 5.919 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.817 3.183 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.183 1.183 25 C -0.163 4.163 26 C -0.167 4.167 27 C -0.154 4.154 28 H 0.250 0.750 29 H 0.138 0.862 30 H 0.124 0.876 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.250 0.750 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.416 -21.285 -5.699 24.373 hybrid contribution -1.164 0.387 2.001 2.347 sum -11.581 -20.899 -3.698 24.177 Atomic orbital electron populations 1.25567 0.96997 1.00645 0.99597 1.23421 0.95342 1.00978 1.01430 1.18594 0.84192 1.04919 0.94320 1.22171 0.98631 0.96264 0.93422 1.20751 0.81288 0.81712 0.84453 1.90665 1.32908 1.73909 1.48047 1.45973 1.36054 1.13052 1.42187 1.21606 0.97061 0.87555 0.94026 1.21162 1.00957 0.91936 0.82512 0.89972 1.22080 1.00730 0.98829 1.00058 1.45863 1.30812 1.45556 1.14277 1.19980 0.80656 0.78355 0.88424 1.90711 1.39408 1.59526 1.53923 1.23384 1.04286 1.03402 0.97189 1.85559 1.35360 1.54256 1.16744 1.23203 1.17224 1.31529 0.97389 0.89985 1.26074 0.93967 0.95107 1.03861 1.70170 1.15612 1.30122 1.38833 0.85002 0.79137 0.77533 0.76623 1.19205 1.20536 1.18322 1.23049 0.91333 0.98415 1.03475 1.22858 0.95393 0.96155 1.02280 1.22832 0.98873 0.92370 1.01350 0.74980 0.86180 0.87569 0.75356 0.89677 0.90530 0.89559 0.90911 0.93729 0.75011 0.87695 0.86890 0.92047 0.88440 0.89704 0.90115 0.87997 0.90927 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.95 19.25 74.32 1.43 -2.52 16 2 C -0.21 -4.03 12.43 31.13 0.39 -3.64 16 3 C 0.02 0.22 5.10 28.79 0.15 0.37 16 4 C -0.10 -1.53 0.82 -52.40 -0.04 -1.58 16 5 C 0.53 10.90 5.91 87.66 0.52 11.42 16 6 O -0.58 -16.39 16.44 -3.02 -0.05 -16.43 16 7 N -0.72 -12.19 5.34 -463.07 -2.47 -14.67 16 8 C 0.12 2.03 5.24 86.38 0.45 2.48 16 9 C 0.14 2.67 2.73 44.99 0.12 2.79 16 10 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16 11 C -0.16 -2.93 9.48 71.98 0.68 -2.25 16 12 N -0.71 -15.22 4.52 -442.52 -2.00 -17.22 16 13 C 0.54 17.67 7.81 87.66 0.68 18.36 16 14 O -0.56 -23.49 15.53 -3.05 -0.05 -23.53 16 15 C -0.13 -4.77 6.16 71.24 0.44 -4.34 16 16 S -0.15 -7.75 20.57 -56.49 -1.16 -8.91 16 17 C -0.55 -30.11 9.50 67.95 0.65 -29.47 16 18 H 0.08 4.20 7.80 -2.91 -0.02 4.17 16 19 C 0.01 0.82 5.49 84.86 0.47 1.29 16 20 N -0.91 -54.75 13.22 21.65 0.29 -54.46 16 21 Si 1.00 42.49 29.55 68.60 2.03 44.52 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 C -0.13 -1.40 6.99 31.12 0.22 -1.18 16 26 C -0.13 -1.28 7.73 31.12 0.24 -1.04 16 27 C -0.12 -1.78 6.79 31.12 0.21 -1.57 16 28 H 0.23 2.95 7.80 -4.42 -0.03 2.91 16 29 H 0.12 1.13 7.31 -2.39 -0.02 1.11 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.41 6.16 7.96 -92.71 -0.74 5.42 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.41 6.74 8.60 -92.71 -0.80 5.94 16 38 H 0.10 3.51 8.14 -2.40 -0.02 3.49 16 39 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 40 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.10 0.84 8.10 -2.39 -0.02 0.82 16 42 H 0.08 1.04 8.09 -2.39 -0.02 1.03 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 0.71 7.61 -2.39 -0.02 0.69 16 45 H 0.07 1.34 7.92 -2.39 -0.02 1.32 16 46 H 0.07 1.10 8.05 -2.39 -0.02 1.09 16 Total: -1.00 -79.37 406.35 2.64 -76.73 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -0.55 Total: 24.85 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 6.60 Total: -10.87 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.19 Total: -86.35 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.10 Total: -39.97 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -7.75 SS G_CDS: -1.16 Total: -8.91 kcal Total: -79.37 2.64 -76.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533644778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.338 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds